TCONS_00068587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068587
Unique NameTCONS_00068587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length845

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068587 ID=TCONS_00068587|Name=TCONS_00068587|organism=Clytia hemisphaerica|type=transcript|length=845bp
ggacatttcaacttttcaccACCTGGACATAGGTTACACCTATTGACAAT
CATCAATTTACCCCCCTTGAACAATACAATTTACCACTGGAACAGCTGGA
CAATTGATCCTCCGCCCCCTCCATGAACGGATTCGTTCCGGAAGAGCCCT
ATACAAGAACTTAGtatgaaataaatatttttaaattcaaataaattttt
taattcaaataattattttttaattcaaattttatttatcATATATTATA
TTAACTTCGACAAAAACGATTCTACAAAAAACTGGTTTAATGAAATAAGA
AGGGTAATTTGAGCGTAAGTAGACTGtcaattagaaaaatttaataatCA
TAACtcaattaaattttattttagattaAACTGAAATTTCTCCCTCACAG
CGAAAAGTCTATGAAAACTACAGTTTTCCCGATGAAAATCAGTAAGAGAT
CAATCTCGAAGTATTTGGCATGAAAAAAATTACCAATTGCTCTCacacga
aaccgaaaagttatCATTAAACTATTTTCATTCTTTCACTTAGCGAAATT
GAAACGTGGATTAGCACTCTATTATCGATTAATTGCACTATTTGAGGACG
CACAAAACCAGAAAAAATCCTTCATTAGTCCAATATCAAAAGACCAGTGA
AATTATTCAAataaaatacacccctgtctcaatgaccTGATGGGAATATT
TTTGCTACAATCGGGGAAATAAATGTTGGCCAGAAATCAATTTCAAAGGT
AATCCCCCCTGCCCCCAAAACTCAATGTTGAGAGTCTATTCATCCCAAAA
ATGTGACGGTATTTCTTGAGTCTAACCTCAACTTTGagattgggg
Run BLAST on NCBI

transcript from alignment at scaffold_485:646450..647294

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068587 ID=TCONS_00068587|Name=TCONS_00068587|organism=Clytia hemisphaerica|type=transcript|length=845bp|location=Sequence derived from alignment at scaffold_485:646450..647294 (Clytia hemisphaerica)
ccccaatctCAAAGTTGAGGTTAGACTCAAGAAATACCGTCACATTTTTG
GGATGAATAGACTCTCAACATTGAGTTTTGGGGGCAGGGGGGATTACCTT
TGAAATTGATTTCTGGCCAACATTTATTTCCCCGATTGTAGCAAAAATAT
TCCCATCAggtcattgagacaggggtgtattttatTTGAATAATTTCACT
GGTCTTTTGATATTGGACTAATGAAGGATTTTTTCTGGTTTTGTGCGTCC
TCAAATAGTGCAATTAATCGATAATAGAGTGCTAATCCACGTTTCAATTT
CGCTAAGTGAAAGAATGAAAATAGTTTAATGataacttttcggtttcgtg
tGAGAGCAATTGGTAATTTTTTTCATGCCAAATACTTCGAGATTGATCTC
TTACTGATTTTCATCGGGAAAACTGTAGTTTTCATAGACTTTTCGCTGTG
AGGGAGAAATTTCAGTTtaatctaaaataaaatttaattgaGTTATGatt
attaaatttttctaattgaCAGTCTACTTACGCTCAAATTACCCTTCTTA
TTTCATTAAACCAGTTTTTTGTAGAATCGTTTTTGTCGAAGTTAATATAA
TATATgataaataaaatttgaattaaaaaataattatttgaattaaaaaa
tttatttgaatttaaaaatatttatttcataCTAAGTTCTTGTATAGGGC
TCTTCCGGAACGAATCCGTTCATGGAGGGGGCGGAGGATCAATTGTCCAG
CTGTTCCAGTGGTAAATTGTATTGTTCAAGGGGGGTAAATTGATGATTGT
CAATAGGTGTAACCTATGTCCAGGTggtgaaaagttgaaatgtcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042786XLOC_042786Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068587-exon-scaffold_485-1491911889:646450..647294TCONS_00068587-exon-scaffold_485-1491911889:646450..647294Clytia hemisphaericaexon
TCONS_00068587-exon-scaffold_485-1510915933:646450..647294TCONS_00068587-exon-scaffold_485-1510915933:646450..647294Clytia hemisphaericaexon
TCONS_00068587-exon-scaffold_485-1575043694:646450..647294TCONS_00068587-exon-scaffold_485-1575043694:646450..647294Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:646450..647294 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.601808	0.475557	0.573739	1.40996	0.517076	0.465805	0.169546	0.445811	0.408092	0.500863	0	0	0	0	0	0	0	0	0	0	0.89837	1.81735	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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