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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068585 ID=TCONS_00068585|Name=TCONS_00068585|organism=Clytia hemisphaerica|type=transcript|length=1831bp
NNACTGACACCATGTCAACAAATGGAATACCTGGGGGTACTGATAGACAG
CTCCAGCATGATATTCAAAGTCCCTCAGgagaaaatgctaaaattgaaaa
aactttgtgTCCAAATGCTAAATCTGAAGAGCTTCCCTATAAGGAAACTT
GCAAGCCTAATAGGCAATCTAATGGCAATAGCTCCAGCCTTTACTCTAGC
TCCTCTTCAGATAAGACTCTTGCAGAAATGCATGAACAAACAGCTAGCGA
AAAACAAACAACATTACGGCTCAATGATGAAACTAGACAACCCTGCAAAG
GAAAAATTAAAGTGGTGGATAGGAAACTTCTCCTCAGGAAACGGCAAGGA
CATAAACATTCGTCCCCCAGATTTAATTATAAGCTCAGATGCGGCAAAGG
GAAAAATGGGGGGATGGGGAGCTCATTGTGGTCAAAGCTCCACAGGAGGG
CTATGGACAGAGTCAGAGAAAAGGGAACATATAAATATCCTAGAAATGAA
AGCAGCCCTGATAGCACTGAAAACCTTTATAAAGGGGAATCACCTAAGGT
CAGTACATCTACTGATAGACAACCAAGTAGCCCTGGCACATATTGTGAAA
ATGGGTCGGCCGACAAACTCTACCCTAATAAGCCTGTCAAAAGAGATTTG
GTTTTTGAACCAAAAGAACATCAGCCTCACTGCAGAATATATTCCATCGA
CCCTAAACAAGGAGGCCGACTTCGAGTCCAGGAATGCAAAAGACTGGGGG
GACTGGAAACTAGCAAGGCAAACGTTCAAACACATAATGAATGTGTGGGG
ACCCCCAGAAATCGATCTTTTTGCCTCAAGAACCTCTCACCAACTACAGA
CTTACTACAGTTGGAAACCAGACCCACACTGTCTAGCAGTAGATGCACTG
AACCAACCCTGGGACCAAAACCTAGTGTATGCTTTCCCCCCATTCTCTCT
AATAGGGAGGTGTCTGGAAAAAGTAAGGAGATCCAAAGCAACAGTATCCT
AGTGGCCCCAATTTGGACGACTCAAACTTGGTACCCAGTCTTATTGGGAA
TGCTAATATCAAACCCAAGAAAGATAGTAATGAGGGAAGACACTCTAACA
CATCCATCAGGGGAGACCCACCCTCTAATACTGAACCAAACCCTCCACCT
AGCGGTATGGGAAATCTCGGGAAACAAAAGCTTTCAGGCAAACTATCACA
AGCAGCTTCTTCCCTTATCCAACAGTCCAAGGCAGAGGGAACTAGAAAAC
ATTACCTGTCAGCCTGGAAAAGCTTCAGCAGCTGGTGTGATAGGGAGGAA
ACTGATCCCATTTCAGCCCCTATAGAGAAAGTGGCCAATTACTTAGGTAC
CCTATTTGAAGAAGGGAAAGAGTATAGCACCATAAATGTACATAGGTCAG
CCATCTCGTTCTATCACCAACTAGTTGAGGGCTTGCCTGCAGGACAACAC
CCCATGGTCACCTCTCTATTAAAAGGAGTCTCAAGACAAAGACCCCAGCT
CCCCAAATACACTGAAATATGGGATATCGACACTGTGCTCAATTAtataa
gggagtggtcagataATGAGTCACTACAATTGAAAGACCTCACACTAAAA
ACAATACTTTTAGGAATACTAGCACCTAACAGGGGCTCCGAGCTAACAAA
CTTGGACATAAAGTTTATGGGAAGGTCGGACTCCACTATTATTTTCCACT
TGAACAAACCTCCAAAACACTTCAAACAAGGGAAGAAAGCAGAACCCATT
GAGTTCAGGAAATTTGAAGGGAATATTAAACTATGCCCTTACAATACTTT
AACAAGTTATATCGAACTCACAAAAAGATTC Run BLAST on NCBI protein sequence of TCONS_00068585-protein >TCONS_00068585-protein ID=TCONS_00068585-protein|Name=TCONS_00068585-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp
TDTMSTNGIPGGTDRQLQHDIQSPSGENAKIEKTLCPNAKSEELPYKETC
KPNRQSNGNSSSLYSSSSSDKTLAEMHEQTASEKQTTLRLNDETRQPCKG
KIKVVDRKLLLRKRQGHKHSSPRFNYKLRCGKGKNGGMGSSLWSKLHRRA
MDRVREKGTYKYPRNESSPDSTENLYKGESPKVSTSTDRQPSSPGTYCEN
GSADKLYPNKPVKRDLVFEPKEHQPHCRIYSIDPKQGGRLRVQECKRLGG
LETSKANVQTHNECVGTPRNRSFCLKNLSPTTDLLQLETRPTLSSSRCTE
PTLGPKPSVCFPPILSNREVSGKSKEIQSNSILVAPIWTTQTWYPVLLGM
LISNPRKIVMREDTLTHPSGETHPLILNQTLHLAVWEISGNKSFQANYHK
QLLPLSNSPRQRELENITCQPGKASAAGVIGRKLIPFQPL Run BLAST on NCBI transcript from alignment at scaffold_485:594477..596307 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068585 ID=TCONS_00068585|Name=TCONS_00068585|organism=Clytia hemisphaerica|type=transcript|length=1831bp|location=Sequence derived from alignment at scaffold_485:594477..596307 (Clytia hemisphaerica)
GAATCTTTTTGTGAGTTCGATATAACTTGTTAAAGTATTGTAAGGGCATA
GTTTAATATTCCCTTCAAATTTCCTGAACTCAATGGGTTCTGCTTTCTTC
CCTTGTTTGAAGTGTTTTGGAGGTTTGTTCAAGTGGAAAATAATAGTGGA
GTCCGACCTTCCCATAAACTTTATGTCCAAGTTTGTTAGCTCGGAGCCCC
TGTTAGGTGCTAGTATTCCTAAAAGTATTGTTTTTAGTGTGAGGTCTTTC
AATTGTAGTGACTCATtatctgaccactcccttataTAATTGAGCACAGT
GTCGATATCCCATATTTCAGTGTATTTGGGGAGCTGGGGTCTTTGTCTTG
AGACTCCTTTTAATAGAGAGGTGACCATGGGGTGTTGTCCTGCAGGCAAG
CCCTCAACTAGTTGGTGATAGAACGAGATGGCTGACCTATGTACATTTAT
GGTGCTATACTCTTTCCCTTCTTCAAATAGGGTACCTAAGTAATTGGCCA
CTTTCTCTATAGGGGCTGAAATGGGATCAGTTTCCTCCCTATCACACCAG
CTGCTGAAGCTTTTCCAGGCTGACAGGTAATGTTTTCTAGTTCCCTCTGC
CTTGGACTGTTGGATAAGGGAAGAAGCTGCTTGTGATAGTTTGCCTGAAA
GCTTTTGTTTCCCGAGATTTCCCATACCGCTAGGTGGAGGGTTTGGTTCA
GTATTAGAGGGTGGGTCTCCCCTGATGGATGTGTTAGAGTGTCTTCCCTC
ATTACTATCTTTCTTGGGTTTGATATTAGCATTCCCAATAAGACTGGGTA
CCAAGTTTGAGTCGTCCAAATTGGGGCCACTAGGATACTGTTGCTTTGGA
TCTCCTTACTTTTTCCAGACACCTCCCTATTAGAGAGAATGGGGGGAAAG
CATACACTAGGTTTTGGTCCCAGGGTTGGTTCAGTGCATCTACTGCTAGA
CAGTGTGGGTCTGGTTTCCAACTGTAGTAAGTCTGTAGTTGGTGAGAGGT
TCTTGAGGCAAAAAGATCGATTTCTGGGGGTCCCCACACATTCATTATGT
GTTTGAACGTTTGCCTTGCTAGTTTCCAGTCCCCCCAGTCTTTTGCATTC
CTGGACTCGAAGTCGGCCTCCTTGTTTAGGGTCGATGGAATATATTCTGC
AGTGAGGCTGATGTTCTTTTGGTTCAAAAACCAAATCTCTTTTGACAGGC
TTATTAGGGTAGAGTTTGTCGGCCGACCCATTTTCACAATATGTGCCAGG
GCTACTTGGTTGTCTATCAGTAGATGTACTGACCTTAGGTGATTCCCCTT
TATAAAGGTTTTCAGTGCTATCAGGGCTGCTTTCATTTCTAGGATATTTA
TATGTTCCCTTTTCTCTGACTCTGTCCATAGCCCTCCTGTGGAGCTTTGA
CCACAATGAGCTCCCCATCCCCCCATTTTTCCCTTTGCCGCATCTGAGCT
TATAATTAAATCTGGGGGACGAATGTTTATGTCCTTGCCGTTTCCTGAGG
AGAAGTTTCCTATCCACCACTTTAATTTTTCCTTTGCAGGGTTGTCTAGT
TTCATCATTGAGCCGTAATGTTGTTTGTTTTTCGCTAGCTGTTTGTTCAT
GCATTTCTGCAAGAGTCTTATCTGAAGAGGAGCTAGAGTAAAGGCTGGAG
CTATTGCCATTAGATTGCCTATTAGGCTTGCAAGTTTCCTTATAGGGAAG
CTCTTCAGATTTAGCATTTGGAcacaaagttttttcaattttagcatttt
ctcCTGAGGGACTTTGAATATCATGCTGGAGCTGTCTATCAGTACCCCCA
GGTATTCCATTTGTTGACATGGTGTCAGTNN Coding sequence (CDS) from alignment at scaffold_485:594477..596307 >TCONS_00068585 ID=TCONS_00068585|Name=TCONS_00068585|organism=Clytia hemisphaerica|type=CDS|length=1323bp|location=Sequence derived from alignment at scaffold_485:594477..596307 (Clytia hemisphaerica)
CTATAGGGGCTGAAATGGGATCAGTTTCCTCCCTATCACACCAGCTGCTG
AAGCTTTTCCAGGCTGACAGGTAATGTTTTCTAGTTCCCTCTGCCTTGGA
CTGTTGGATAAGGGAAGAAGCTGCTTGTGATAGTTTGCCTGAAAGCTTTT
GTTTCCCGAGATTTCCCATACCGCTAGGTGGAGGGTTTGGTTCAGTATTA
GAGGGTGGGTCTCCCCTGATGGATGTGTTAGAGTGTCTTCCCTCATTACT
ATCTTTCTTGGGTTTGATATTAGCATTCCCAATAAGACTGGGTACCAAGT
TTGAGTCGTCCAAATTGGGGCCACTAGGATACTGTTGCTTTGGATCTCCT
TACTTTTTCCAGACACCTCCCTATTAGAGAGAATGGGGGGAAAGCATACA
CTAGGTTTTGGTCCCAGGGTTGGTTCAGTGCATCTACTGCTAGACAGTGT
GGGTCTGGTTTCCAACTGTAGTAAGTCTGTAGTTGGTGAGAGGTTCTTGA
GGCAAAAAGATCGATTTCTGGGGGTCCCCACACATTCATTATGTGTTTGA
ACGTTTGCCTTGCTAGTTTCCAGTCCCCCCAGTCTTTTGCATTCCTGGAC
TCGAAGTCGGCCTCCTTGTTTAGGGTCGATGGAATATATTCTGCAGTGAG
GCTGATGTTCTTTTGGTTCAAAAACCAAATCTCTTTTGACAGGCTTATTA
GGGTAGAGTTTGTCGGCCGACCCATTTTCACAATATGTGCCAGGGCTACT
TGGTTGTCTATCAGTAGATGTACTGACCTTAGGTGATTCCCCTTTATAAA
GGTTTTCAGTGCTATCAGGGCTGCTTTCATTTCTAGGATATTTATATGTT
CCCTTTTCTCTGACTCTGTCCATAGCCCTCCTGTGGAGCTTTGACCACAA
TGAGCTCCCCATCCCCCCATTTTTCCCTTTGCCGCATCTGAGCTTATAAT
TAAATCTGGGGGACGAATGTTTATGTCCTTGCCGTTTCCTGAGGAGAAGT
TTCCTATCCACCACTTTAATTTTTCCTTTGCAGGGTTGTCTAGTTTCATC
ATTGAGCCGTAATGTTGTTTGTTTTTCGCTAGCTGTTTGTTCATGCATTT
CTGCAAGAGTCTTATCTGAAGAGGAGCTAGAGTAAAGGCTGGAGCTATTG
CCATTAGATTGCCTATTAGGCTTGCAAGTTTCCTTATAGGGAAGCTCTTC
AGATTTAGCATTTGGAcacaaagttttttcaattttagcattttctcCTG
AGGGACTTTGAATATCATGCTGGAGCTGTCTATCAGTACCCCCAGGTATT
CCATTTGTTGACATGGTGTCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068585-exon-scaffold_485-1491911889:594477..596307 | TCONS_00068585-exon-scaffold_485-1491911889:594477..596307 | Clytia hemisphaerica | exon |
| TCONS_00068585-exon-scaffold_485-1510915933:594477..596307 | TCONS_00068585-exon-scaffold_485-1510915933:594477..596307 | Clytia hemisphaerica | exon |
| TCONS_00068585-exon-scaffold_485-1575043694:594477..596307 | TCONS_00068585-exon-scaffold_485-1575043694:594477..596307 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:594477..596307 . |
Blast
The following BLAST results are available for this feature:
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