TCONS_00068584 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068584
Unique NameTCONS_00068584
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length770

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068584 ID=TCONS_00068584|Name=TCONS_00068584|organism=Clytia hemisphaerica|type=transcript|length=770bp
NTCGCTAGACTGGATAGACTGGAGAAGAAGATCGACGATCTTGTAAACAA
AGATGATGTCGTTAAAGGATCCAAACAACAACAGACATACGCTAGCATCG
CTAAAGATtagctaaagaaaaaagacaacGATATAGAATCAAAGCAACAA
CAGACATACGCTGACATTACTAACGATGAGCTGAAGCAACAAGAGGTAAC
GATCAAGAATTTcatcaaagaagagaaagaagaagaacgaTGGTTAAACT
TAACAAAGTACAATATCATTGTTCACAACCTCGGAGAGAACAAACATGAA
GACCTAGAAGAGCAACGTGTAGGTGATAAGGATTATGTTGAAGAAGTTGT
ACAAAACCAAATGGGATTAAAGGTAAACATCGTCAACGCAGAAAGAATAG
GAGCTCGGAAGGacgaaatattcaaaacaaaaatatggcGACCCTTGAAA
GTCGTGCAAAAGAACGAAGAAGAGAAACTTCAGATTCTGGCATCAGTCCA
CAAATTAGAGAAAGACGAATTTAGAAGAAAGAACGCGAAACTATTAAAGA
ATGGTATAGAAAGGCtaaggagaaaacaaaattacaaaagaatGGCAGCT
GGATATATAAGGTTAGAGGAAGTCCTCGGACAAAACTCTACTTTAAGAAG
ATCTGTAACAAACCCGttactgaaaataaaatattgtaaagacgACTGGT
TAAGAGGCCCACCGTGCGCTTAcaactgtaaaattgtaaaatgttaagca
tgattatttcatagaggtcg
Run BLAST on NCBI

protein sequence of TCONS_00068584-protein

>TCONS_00068584-protein ID=TCONS_00068584-protein|Name=TCONS_00068584-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MGLKVNIVNAERIGARKDEIFKTKIWRPLKVVQKNEEEKLQILASVHKLE
KDEFRRKNAKLLKNGIERLRRKQNYKRMAAGYIRLEEVLGQNSTLRRSVT
NPLLKIKYCKDDWLRGPPCAYNCKIVKC
Run BLAST on NCBI

transcript from alignment at scaffold_485:517786..518555

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068584 ID=TCONS_00068584|Name=TCONS_00068584|organism=Clytia hemisphaerica|type=transcript|length=770bp|location=Sequence derived from alignment at scaffold_485:517786..518555 (Clytia hemisphaerica)
cgacctctatgaaataatcatgcttaacattttacaattttacagttgTA
AGCGCACGGTGGGCCTCTTAACCAGTcgtctttacaatattttattttca
gtaaCGGGTTTGTTACAGATCTTCTTAAAGTAGAGTTTTGTCCGAGGACT
TCCTCTAACCTTATATATCCAGCTGCCattcttttgtaattttgttttct
ccttaGCCTTTCTATACCATTCTTTAATAGTTTCGCGTTCTTTCTTCTAA
ATTCGTCTTTCTCTAATTTGTGGACTGATGCCAGAATCTGAAGTTTCTCT
TCTTCGTTCTTTTGCACGACTTTCAAGGGTCgccatatttttgttttgaa
tatttcgtCCTTCCGAGCTCCTATTCTTTCTGCGTTGACGATGTTTACCT
TTAATCCCATTTGGTTTTGTACAACTTCTTCAACATAATCCTTATCACCT
ACACGTTGCTCTTCTAGGTCTTCATGTTTGTTCTCTCCGAGGTTGTGAAC
AATGATATTGTACTTTGTTAAGTTTAACCAtcgttcttcttctttctctt
ctttgatgAAATTCTTGATCGTTACCTCTTGTTGCTTCAGCTCATCGTTA
GTAATGTCAGCGTATGTCTGTTGTTGCTTTGATTCTATATCgttgtcttt
tttctttagctaATCTTTAGCGATGCTAGCGTATGTCTGTTGTTGTTTGG
ATCCTTTAACGACATCATCTTTGTTTACAAGATCGTCGATCTTCTTCTCC
AGTCTATCCAGTCTAGCGAN

Coding sequence (CDS) from alignment at scaffold_485:517786..518555

>TCONS_00068584 ID=TCONS_00068584|Name=TCONS_00068584|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_485:517786..518555 (Clytia hemisphaerica)
ttaacattttacaattttacagttgTAAGCGCACGGTGGGCCTCTTAACC
AGTcgtctttacaatattttattttcagtaaCGGGTTTGTTACAGATCTT
CTTAAAGTAGAGTTTTGTCCGAGGACTTCCTCTAACCTTATATATCCAGC
TGCCattcttttgtaattttgttttctccttaGCCTTTCTATACCATTCT
TTAATAGTTTCGCGTTCTTTCTTCTAAATTCGTCTTTCTCTAATTTGTGG
ACTGATGCCAGAATCTGAAGTTTCTCTTCTTCGTTCTTTTGCACGACTTT
CAAGGGTCgccatatttttgttttgaatatttcgtCCTTCCGAGCTCCTA
TTCTTTCTGCGTTGACGATGTTTACCTTTAATCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042783XLOC_042783Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068584-proteinTCONS_00068584-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068584-exon-scaffold_485-1491911889:517786..518555TCONS_00068584-exon-scaffold_485-1491911889:517786..518555Clytia hemisphaericaexon
TCONS_00068584-exon-scaffold_485-1510915933:517786..518555TCONS_00068584-exon-scaffold_485-1510915933:517786..518555Clytia hemisphaericaexon
TCONS_00068584-exon-scaffold_485-1575043694:517786..518555TCONS_00068584-exon-scaffold_485-1575043694:517786..518555Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:517786..518555 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.55261	1.54986	2.45718	3.47999	0.928539	1.43678	1.41183	1.42175	0.602509	0.628779	0.541006	0.56962	0.98466	0.510776	0.642233	0.756491	0.426489	1.61786	0.323222	0.582241	0.759675	0.737648	0.689489	1.29359	0.896362	1.18723	0.702219	0.142528	0.48092	0.318834
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068584 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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