TCONS_00068567 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068567
Unique NameTCONS_00068567
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length711

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068567 ID=TCONS_00068567|Name=TCONS_00068567|organism=Clytia hemisphaerica|type=transcript|length=711bp
CAGATTGATACCGGGCAGGAATATTGACagaaaaaatattacaataaaCT
TCTGTACTTGGCTCAAGAGCTCTATTCACACAACCTGGCCAGTTGTTTGG
GTCAATCGTTATCTCTGGATATAAAAAGTCTGTAAGAAGAGCAACAATGA
TACCTGTCTTACTTTGTCTCTCGTTGTTACAAACAGGACAAGTTCCTCGA
ACATCGAATCTTGTTTAAAACAATCTTTTCTCTCCTTCTGATAATGTCTT
GAAAAGGTTATCTGAAAAAAGCTCTGTAAACTGTGCATCACTATTTCTGC
TAGCATACNGTTATCTGAAAAAAGCTCTGTAAACTGTGCATCACTATTTC
TGCTAGCATACGTACcacaattttcaataatttttgacCATATTGGTTCA
GGAATTTCATCAAGCAGTCTAAACGCATTACTTTTGACATCAGTGATATC
ATTTTCAATTGGAATTTCCATCGAACCACTTATATTtataaagcaaataa
aagaattcaCTTAATTCTTCAAATGAGAGTTTCGCTTTAATTTCAGGAAG
AAGCAGGCGGTAACTTATTTCGAGAAAACAATCAACAGCGCAAGAATATG
TACGACCGCGAGTTGTTCTACATGAATTTTGGAAATGCGCAACACTCAAT
GTTGTATCTAAGTCAATTAATAAATCCTCCTGTTCCATGACcgtaaaaag
ttttcaattca
Run BLAST on NCBI

protein sequence of TCONS_00068567-protein

>TCONS_00068567-protein ID=TCONS_00068567-protein|Name=TCONS_00068567-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MEIPIENDITDVKSNAFRLLDEIPEPIWSKIIENCGTYASRNSDAQFTEL
FSDNXMLAEIVMHSLQSFFQITFSRHYQKERKDCFKQDSMFEELVLFVTT
RDKVRQVSLLLFLQTFYIQR
Run BLAST on NCBI

transcript from alignment at scaffold_485:283608..284318

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068567 ID=TCONS_00068567|Name=TCONS_00068567|organism=Clytia hemisphaerica|type=transcript|length=711bp|location=Sequence derived from alignment at scaffold_485:283608..284318 (Clytia hemisphaerica)
tgaattgaaaactttttacgGTCATGGAACAGGAGGATTTATTAATTGAC
TTAGATACAACATTGAGTGTTGCGCATTTCCAAAATTCATGTAGAACAAC
TCGCGGTCGTACATATTCTTGCGCTGTTGATTGTTTTCTCGAAATAAGTT
ACCGCCTGCTTCTTCCTGAAATTAAAGCGAAACTCTCATTTGAAGAATTA
AGtgaattcttttatttgctttataAATATAAGTGGTTCGATGGAAATTC
CAATTGAAAATGATATCACTGATGTCAAAAGTAATGCGTTTAGACTGCTT
GATGAAATTCCTGAACCAATATGgtcaaaaattattgaaaattgtgGTAC
GTATGCTAGCAGAAATAGTGATGCACAGTTTACAGAGCTTTTTTCAGATA
ACNGTATGCTAGCAGAAATAGTGATGCACAGTTTACAGAGCTTTTTTCAG
ATAACCTTTTCAAGACATTATCAGAAGGAGAGAAAAGATTGTTTTAAACA
AGATTCGATGTTCGAGGAACTTGTCCTGTTTGTAACAACGAGAGACAAAG
TAAGACAGGTATCATTGTTGCTCTTCTTACAGACTTTTTATATCCAGAGA
TAACGATTGACCCAAACAACTGGCCAGGTTGTGTGAATAGAGCTCTTGAG
CCAAGTACAGAAGtttattgtaatattttttctGTCAATATTCCTGCCCG
GTATCAATCTG

Coding sequence (CDS) from alignment at scaffold_485:283608..284318

>TCONS_00068567 ID=TCONS_00068567|Name=TCONS_00068567|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_485:283608..284318 (Clytia hemisphaerica)
ATGGAAATTCCAATTGAAAATGATATCACTGATGTCAAAAGTAATGCGTT
TAGACTGCTTGATGAAATTCCTGAACCAATATGgtcaaaaattattgaaa
attgtgGTACGTATGCTAGCAGAAATAGTGATGCACAGTTTACAGAGCTT
TTTTCAGATAACNGTATGCTAGCAGAAATAGTGATGCACAGTTTACAGAG
CTTTTTTCAGATAACCTTTTCAAGACATTATCAGAAGGAGAGAAAAGATT
GTTTTAAACAAGATTCGATGTTCGAGGAACTTGTCCTGTTTGTAACAACG
AGAGACAAAGTAAGACAGGTATCATTGTTGCTCTTCTTACAGACTTTTTA
TATCCAGAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042766XLOC_042766Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068567-proteinTCONS_00068567-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068567-exon-scaffold_485-1491911889:283608..284318TCONS_00068567-exon-scaffold_485-1491911889:283608..284318Clytia hemisphaericaexon
TCONS_00068567-exon-scaffold_485-1510915933:283608..284318TCONS_00068567-exon-scaffold_485-1510915933:283608..284318Clytia hemisphaericaexon
TCONS_00068567-exon-scaffold_485-1575043694:283608..284318TCONS_00068567-exon-scaffold_485-1575043694:283608..284318Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:283608..284318 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.381959	0.424483	0.970983	0.754913	0.34818	0.652253	0.497217	0.896166	0.612963	0.275648	0.504246	0.888653	0.212674	0.135724	0.170749	0.412417	0	0.396993	0.352246	0	1.12737	0.588561	0.115515	0	0.379156	0.680257	0.592627	0.657908	0.697294	0.559685
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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