TCONS_00068563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068563
Unique NameTCONS_00068563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068563 ID=TCONS_00068563|Name=TCONS_00068563|organism=Clytia hemisphaerica|type=transcript|length=307bp
CTGCGCCCAACACGTACAAATGACATCACTAGAGGTAAAGCATTACGTAT
TGTAGACTTTGTTTCCAGAATTCGCCCTGCTGAGGATGAAAAAGTTTTGT
CGTACGACAATAACTGCAAGTTGGCTTTAATTTTACAGGACTCCAAACCT
AAACTTTCTTCCGTTACAATAGAGCAGTATAATATTGCGAATCTTAGAAT
TTTTTATGAGCTACTTTTTTCTGGGAAGCTTTCCACCCTTCTTCATGTAC
AGGAATACCTCTCGTATGCGATCAAGGTTCTAGAATTGGCGACTAAGTAC
ACATGGC
Run BLAST on NCBI

transcript from alignment at scaffold_485:189216..189522

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068563 ID=TCONS_00068563|Name=TCONS_00068563|organism=Clytia hemisphaerica|type=transcript|length=307bp|location=Sequence derived from alignment at scaffold_485:189216..189522 (Clytia hemisphaerica)
GCCATGTGTACTTAGTCGCCAATTCTAGAACCTTGATCGCATACGAGAGG
TATTCCTGTACATGAAGAAGGGTGGAAAGCTTCCCAGAAAAAAGTAGCTC
ATAAAAAATTCTAAGATTCGCAATATTATACTGCTCTATTGTAACGGAAG
AAAGTTTAGGTTTGGAGTCCTGTAAAATTAAAGCCAACTTGCAGTTATTG
TCGTACGACAAAACTTTTTCATCCTCAGCAGGGCGAATTCTGGAAACAAA
GTCTACAATACGTAATGCTTTACCTCTAGTGATGTCATTTGTACGTGTTG
GGCGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042762XLOC_042762Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068563-exon-scaffold_485-1491911889:189216..189522TCONS_00068563-exon-scaffold_485-1491911889:189216..189522Clytia hemisphaericaexon
TCONS_00068563-exon-scaffold_485-1510915933:189216..189522TCONS_00068563-exon-scaffold_485-1510915933:189216..189522Clytia hemisphaericaexon
TCONS_00068563-exon-scaffold_485-1575043694:189216..189522TCONS_00068563-exon-scaffold_485-1575043694:189216..189522Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:189216..189522 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.352805	1.22892	0.801539	17.0764	13.494	10.6983	16.983	11.2804	8.16973	8.43053	7.95142	9.14345	14.993	0.205438	0.220466	0	0	0	0	0.699604	0	0	0	13.207	18.3737	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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