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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068554 ID=TCONS_00068554|Name=TCONS_00068554|organism=Clytia hemisphaerica|type=transcript|length=1642bp
aattgtgttgtttacacctcatgagacattttgaatttcaagtacttttg
ttttagagttaatgtttgccttttgggaatttaaattggtttaaatgtat
aatttgatagcaatgaaatgtttttaaaaacgaggacaacaataaattta
tgcatctcgagaagagtgtattacaTTGCTGGCACTTGAAAAACTTATCA
GTATAGCCTGCACTTAAAAGTTGGAGTAATTCCCAAAGATCCAATTCTAA
TCATAATTCCATATAATAAGATTTCAAAGATAAATCATATCCAATTGTAC
TTGAAATAATTCATTTACAACTTTTTTCATTTGCAAACATCGTTCAACTA
TTTCTCTCGATTTATTATTTTCGAGTTGTCGATGCAGTTTCGCATATTCA
TTtaccaaaaagaaaagatttgacAAAAGCTCATCTTCCGCATCAGAAAG
GAGCTTTACTACTGCCTCAAAGTCGTGCTTTCGAAATTTCAGGTATGAAC
TGATTCCAATGATAATTCCATTATTGCGTTGATTAAAGTCATCAAGTAAC
ACTTCTGCATCGTCGAACTTTCCtaatttgatcaaaatcaaTGCTTCCGA
AATTAAAACATCTgcatcaataaaaaaatattgtttaaattcaTCGCAAG
CTAGTAGTGCTTCGTTGTAATCTCCTTTCTTGTAAAGTAAAAAGCAattc
ttttttgtgaaattaaagTGCCATaatcgagaaaaaggttttcTGTGTAA
ATGTTCTTTCCAATTCTTCATGACTTGTTCGGCCAAATCAAAGCAACCCT
TCTTGATGTATAAAGAACATTTCGCATTATAATATACCATAAAGTGCACG
TCACTGAGATTATTTGTGTCAACGGAATTCAACAAAGCTTCAACTTCACT
TACAGTAAAAAAACTCGCCAATCTTAATTTAATATCATCAAATCCTTTCT
TCTTGACCAGTTCATTGAATAAATTTCGAACGATATTATTGAATAACAAC
GCTCTTCCATGTATATTATATAACTCAGCTTGCTTTAGCTTCCACTGGTA
AACTTCTACAGAATGCTCTTCAAGTTCTGTGGAAaactctttttcaaaag
aaaaaatctcattCACATTAAGTAAACCTAATTGATTTGACACATATAAG
AATCGACGATGACAACACAACAGCATATCAAAAGTTTTCACATCTCGAGA
CAACCTATATTGTTTTAACAAAACTTGAACAAAAAGTTCAGCAAGTAGGT
ATAAGTTTTCCATCTCCATTCTGCCTGCGGCTATATCTAACACCAGGTAA
GCATCAAAGTTGATAGCATTGAGTGCACCACTCATGATCAAACGAAAAAC
ATGAATGTACCATAAATCCTCATAGTCGCAATTTATAACCAAATCTTTAA
TAGAAACATCGATTTTCAAAAGAACACCTTCAAGCAGTGTCAACGGACAT
TCGTCCTCAACAAATTGTTTCTGTTCAATACGATATCGGATAACTTTTTG
CACAAGACTGTGAATTTCTAAACAATCATTTCGCTCGTTGACCAATGAAT
ATTGACCAAGCAGTGAGATGATTTCATTTAATTCAAATTCGTCAACTTTA
TCAAAATAGCTGAAtgtctttttattgatttttcgattGTNN Run BLAST on NCBI protein sequence of TCONS_00068554-protein >TCONS_00068554-protein ID=TCONS_00068554-protein|Name=TCONS_00068554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
XNRKINKKTFSYFDKVDEFELNEIISLLGQYSLVNERNDCLEIHSLVQKV
IRYRIEQKQFVEDECPLTLLEGVLLKIDVSIKDLVINCDYEDLWYIHVFR
LIMSGALNAINFDAYLVLDIAAGRMEMENLYLLAELFVQVLLKQYRLSRD
VKTFDMLLCCHRRFLYVSNQLGLLNVNEIFSFEKEFSTELEEHSVEVYQW
KLKQAELYNIHGRALLFNNIVRNLFNELVKKKGFDDIKLRLASFFTVSEV
EALLNSVDTNNLSDVHFMVYYNAKCSLYIKKGCFDLAEQVMKNWKEHLHR
KPFSRLWHFNFTKKNCFLLYKKGDYNEALLACDEFKQYFFIDADVLISEA
LILIKLGKFDDAEVLLDDFNQRNNGIIIGISSYLKFRKHDFEAVVKLLSD
AEDELLSNLFFLVNEYAKLHRQLENNKSREIVERCLQMKKVVNELFQVQL
DMIYL Run BLAST on NCBI transcript from alignment at scaffold_485:27172..28813 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068554 ID=TCONS_00068554|Name=TCONS_00068554|organism=Clytia hemisphaerica|type=transcript|length=1642bp|location=Sequence derived from alignment at scaffold_485:27172..28813 (Clytia hemisphaerica)
NNACaatcgaaaaatcaataaaaagacaTTCAGCTATTTTGATAAAGTTG
ACGAATTTGAATTAAATGAAATCATCTCACTGCTTGGTCAATATTCATTG
GTCAACGAGCGAAATGATTGTTTAGAAATTCACAGTCTTGTGCAAAAAGT
TATCCGATATCGTATTGAACAGAAACAATTTGTTGAGGACGAATGTCCGT
TGACACTGCTTGAAGGTGTTCTTTTGAAAATCGATGTTTCTATTAAAGAT
TTGGTTATAAATTGCGACTATGAGGATTTATGGTACATTCATGTTTTTCG
TTTGATCATGAGTGGTGCACTCAATGCTATCAACTTTGATGCTTACCTGG
TGTTAGATATAGCCGCAGGCAGAATGGAGATGGAAAACTTATACCTACTT
GCTGAACTTTTTGTTCAAGTTTTGTTAAAACAATATAGGTTGTCTCGAGA
TGTGAAAACTTTTGATATGCTGTTGTGTTGTCATCGTCGATTCTTATATG
TGTCAAATCAATTAGGTTTACTTAATGTGaatgagattttttcttttgaa
aaagagttTTCCACAGAACTTGAAGAGCATTCTGTAGAAGTTTACCAGTG
GAAGCTAAAGCAAGCTGAGTTATATAATATACATGGAAGAGCGTTGTTAT
TCAATAATATCGTTCGAAATTTATTCAATGAACTGGTCAAGAAGAAAGGA
TTTGATGATATTAAATTAAGATTGGCGAGTTTTTTTACTGTAAGTGAAGT
TGAAGCTTTGTTGAATTCCGTTGACACAAATAATCTCAGTGACGTGCACT
TTATGGTATATTATAATGCGAAATGTTCTTTATACATCAAGAAGGGTTGC
TTTGATTTGGCCGAACAAGTCATGAAGAATTGGAAAGAACATTTACACAg
aaaacctttttctcgattATGGCActttaatttcacaaaaaagaatTGCT
TTTTACTTTACAAGAAAGGAGATTACAACGAAGCACTACTAGCTTGCGAt
gaatttaaacaatatttttttattgatgcAGATGTTTTAATTTCGGAAGC
AttgattttgatcaaattaGGAAAGTTCGACGATGCAGAAGTGTTACTTG
ATGACTTTAATCAACGCAATAATGGAATTATCATTGGAATCAGTTCATAC
CTGAAATTTCGAAAGCACGACTTTGAGGCAGTAGTAAAGCTCCTTTCTGA
TGCGGAAGATGAGCTTTTgtcaaatcttttctttttggtaAATGAATATG
CGAAACTGCATCGACAACTCGAAAATAATAAATCGAGAGAAATAGTTGAA
CGATGTTTGCAAATGAAAAAAGTTGTAAATGAATTATTTCAAGTACAATT
GGATATGATTTATCTTTGAAATCTTATTATATGGAATTATGATTAGAATT
GGATCTTTGGGAATTACTCCAACTTTTAAGTGCAGGCTATACTGATAAGT
TTTTCAAGTGCCAGCAAtgtaatacactcttctcgagatgcataaattta
ttgttgtcctcgtttttaaaaacatttcattgctatcaaattatacattt
aaaccaatttaaattcccaaaaggcaaacattaactctaaaacaaaagta
cttgaaattcaaaatgtctcatgaggtgtaaacaacacaatt Coding sequence (CDS) from alignment at scaffold_485:27172..28813 >TCONS_00068554 ID=TCONS_00068554|Name=TCONS_00068554|organism=Clytia hemisphaerica|type=CDS|length=1368bp|location=Sequence derived from alignment at scaffold_485:27172..28813 (Clytia hemisphaerica)
NACaatcgaaaaatcaataaaaagacaTTCAGCTATTTTGATAAAGTTGA
CGAATTTGAATTAAATGAAATCATCTCACTGCTTGGTCAATATTCATTGG
TCAACGAGCGAAATGATTGTTTAGAAATTCACAGTCTTGTGCAAAAAGTT
ATCCGATATCGTATTGAACAGAAACAATTTGTTGAGGACGAATGTCCGTT
GACACTGCTTGAAGGTGTTCTTTTGAAAATCGATGTTTCTATTAAAGATT
TGGTTATAAATTGCGACTATGAGGATTTATGGTACATTCATGTTTTTCGT
TTGATCATGAGTGGTGCACTCAATGCTATCAACTTTGATGCTTACCTGGT
GTTAGATATAGCCGCAGGCAGAATGGAGATGGAAAACTTATACCTACTTG
CTGAACTTTTTGTTCAAGTTTTGTTAAAACAATATAGGTTGTCTCGAGAT
GTGAAAACTTTTGATATGCTGTTGTGTTGTCATCGTCGATTCTTATATGT
GTCAAATCAATTAGGTTTACTTAATGTGaatgagattttttcttttgaaa
aagagttTTCCACAGAACTTGAAGAGCATTCTGTAGAAGTTTACCAGTGG
AAGCTAAAGCAAGCTGAGTTATATAATATACATGGAAGAGCGTTGTTATT
CAATAATATCGTTCGAAATTTATTCAATGAACTGGTCAAGAAGAAAGGAT
TTGATGATATTAAATTAAGATTGGCGAGTTTTTTTACTGTAAGTGAAGTT
GAAGCTTTGTTGAATTCCGTTGACACAAATAATCTCAGTGACGTGCACTT
TATGGTATATTATAATGCGAAATGTTCTTTATACATCAAGAAGGGTTGCT
TTGATTTGGCCGAACAAGTCATGAAGAATTGGAAAGAACATTTACACAga
aaacctttttctcgattATGGCActttaatttcacaaaaaagaatTGCTT
TTTACTTTACAAGAAAGGAGATTACAACGAAGCACTACTAGCTTGCGAtg
aatttaaacaatatttttttattgatgcAGATGTTTTAATTTCGGAAGCA
ttgattttgatcaaattaGGAAAGTTCGACGATGCAGAAGTGTTACTTGA
TGACTTTAATCAACGCAATAATGGAATTATCATTGGAATCAGTTCATACC
TGAAATTTCGAAAGCACGACTTTGAGGCAGTAGTAAAGCTCCTTTCTGAT
GCGGAAGATGAGCTTTTgtcaaatcttttctttttggtaAATGAATATGC
GAAACTGCATCGACAACTCGAAAATAATAAATCGAGAGAAATAGTTGAAC
GATGTTTGCAAATGAAAAAAGTTGTAAATGAATTATTTCAAGTACAATTG
GATATGATTTATCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068554-exon-scaffold_485-1491911889:27172..28813 | TCONS_00068554-exon-scaffold_485-1491911889:27172..28813 | Clytia hemisphaerica | exon |
| TCONS_00068554-exon-scaffold_485-1510915933:27172..28813 | TCONS_00068554-exon-scaffold_485-1510915933:27172..28813 | Clytia hemisphaerica | exon |
| TCONS_00068554-exon-scaffold_485-1575043694:27172..28813 | TCONS_00068554-exon-scaffold_485-1575043694:27172..28813 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:27172..28813 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011990 | TPR-like_helical_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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