TCONS_00068554 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068554
Unique NameTCONS_00068554
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1642

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068554 ID=TCONS_00068554|Name=TCONS_00068554|organism=Clytia hemisphaerica|type=transcript|length=1642bp
aattgtgttgtttacacctcatgagacattttgaatttcaagtacttttg
ttttagagttaatgtttgccttttgggaatttaaattggtttaaatgtat
aatttgatagcaatgaaatgtttttaaaaacgaggacaacaataaattta
tgcatctcgagaagagtgtattacaTTGCTGGCACTTGAAAAACTTATCA
GTATAGCCTGCACTTAAAAGTTGGAGTAATTCCCAAAGATCCAATTCTAA
TCATAATTCCATATAATAAGATTTCAAAGATAAATCATATCCAATTGTAC
TTGAAATAATTCATTTACAACTTTTTTCATTTGCAAACATCGTTCAACTA
TTTCTCTCGATTTATTATTTTCGAGTTGTCGATGCAGTTTCGCATATTCA
TTtaccaaaaagaaaagatttgacAAAAGCTCATCTTCCGCATCAGAAAG
GAGCTTTACTACTGCCTCAAAGTCGTGCTTTCGAAATTTCAGGTATGAAC
TGATTCCAATGATAATTCCATTATTGCGTTGATTAAAGTCATCAAGTAAC
ACTTCTGCATCGTCGAACTTTCCtaatttgatcaaaatcaaTGCTTCCGA
AATTAAAACATCTgcatcaataaaaaaatattgtttaaattcaTCGCAAG
CTAGTAGTGCTTCGTTGTAATCTCCTTTCTTGTAAAGTAAAAAGCAattc
ttttttgtgaaattaaagTGCCATaatcgagaaaaaggttttcTGTGTAA
ATGTTCTTTCCAATTCTTCATGACTTGTTCGGCCAAATCAAAGCAACCCT
TCTTGATGTATAAAGAACATTTCGCATTATAATATACCATAAAGTGCACG
TCACTGAGATTATTTGTGTCAACGGAATTCAACAAAGCTTCAACTTCACT
TACAGTAAAAAAACTCGCCAATCTTAATTTAATATCATCAAATCCTTTCT
TCTTGACCAGTTCATTGAATAAATTTCGAACGATATTATTGAATAACAAC
GCTCTTCCATGTATATTATATAACTCAGCTTGCTTTAGCTTCCACTGGTA
AACTTCTACAGAATGCTCTTCAAGTTCTGTGGAAaactctttttcaaaag
aaaaaatctcattCACATTAAGTAAACCTAATTGATTTGACACATATAAG
AATCGACGATGACAACACAACAGCATATCAAAAGTTTTCACATCTCGAGA
CAACCTATATTGTTTTAACAAAACTTGAACAAAAAGTTCAGCAAGTAGGT
ATAAGTTTTCCATCTCCATTCTGCCTGCGGCTATATCTAACACCAGGTAA
GCATCAAAGTTGATAGCATTGAGTGCACCACTCATGATCAAACGAAAAAC
ATGAATGTACCATAAATCCTCATAGTCGCAATTTATAACCAAATCTTTAA
TAGAAACATCGATTTTCAAAAGAACACCTTCAAGCAGTGTCAACGGACAT
TCGTCCTCAACAAATTGTTTCTGTTCAATACGATATCGGATAACTTTTTG
CACAAGACTGTGAATTTCTAAACAATCATTTCGCTCGTTGACCAATGAAT
ATTGACCAAGCAGTGAGATGATTTCATTTAATTCAAATTCGTCAACTTTA
TCAAAATAGCTGAAtgtctttttattgatttttcgattGTNN
Run BLAST on NCBI

protein sequence of TCONS_00068554-protein

>TCONS_00068554-protein ID=TCONS_00068554-protein|Name=TCONS_00068554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
XNRKINKKTFSYFDKVDEFELNEIISLLGQYSLVNERNDCLEIHSLVQKV
IRYRIEQKQFVEDECPLTLLEGVLLKIDVSIKDLVINCDYEDLWYIHVFR
LIMSGALNAINFDAYLVLDIAAGRMEMENLYLLAELFVQVLLKQYRLSRD
VKTFDMLLCCHRRFLYVSNQLGLLNVNEIFSFEKEFSTELEEHSVEVYQW
KLKQAELYNIHGRALLFNNIVRNLFNELVKKKGFDDIKLRLASFFTVSEV
EALLNSVDTNNLSDVHFMVYYNAKCSLYIKKGCFDLAEQVMKNWKEHLHR
KPFSRLWHFNFTKKNCFLLYKKGDYNEALLACDEFKQYFFIDADVLISEA
LILIKLGKFDDAEVLLDDFNQRNNGIIIGISSYLKFRKHDFEAVVKLLSD
AEDELLSNLFFLVNEYAKLHRQLENNKSREIVERCLQMKKVVNELFQVQL
DMIYL
Run BLAST on NCBI

transcript from alignment at scaffold_485:27172..28813

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068554 ID=TCONS_00068554|Name=TCONS_00068554|organism=Clytia hemisphaerica|type=transcript|length=1642bp|location=Sequence derived from alignment at scaffold_485:27172..28813 (Clytia hemisphaerica)
NNACaatcgaaaaatcaataaaaagacaTTCAGCTATTTTGATAAAGTTG ACGAATTTGAATTAAATGAAATCATCTCACTGCTTGGTCAATATTCATTG GTCAACGAGCGAAATGATTGTTTAGAAATTCACAGTCTTGTGCAAAAAGT TATCCGATATCGTATTGAACAGAAACAATTTGTTGAGGACGAATGTCCGT TGACACTGCTTGAAGGTGTTCTTTTGAAAATCGATGTTTCTATTAAAGAT TTGGTTATAAATTGCGACTATGAGGATTTATGGTACATTCATGTTTTTCG TTTGATCATGAGTGGTGCACTCAATGCTATCAACTTTGATGCTTACCTGG TGTTAGATATAGCCGCAGGCAGAATGGAGATGGAAAACTTATACCTACTT GCTGAACTTTTTGTTCAAGTTTTGTTAAAACAATATAGGTTGTCTCGAGA TGTGAAAACTTTTGATATGCTGTTGTGTTGTCATCGTCGATTCTTATATG TGTCAAATCAATTAGGTTTACTTAATGTGaatgagattttttcttttgaa aaagagttTTCCACAGAACTTGAAGAGCATTCTGTAGAAGTTTACCAGTG GAAGCTAAAGCAAGCTGAGTTATATAATATACATGGAAGAGCGTTGTTAT TCAATAATATCGTTCGAAATTTATTCAATGAACTGGTCAAGAAGAAAGGA TTTGATGATATTAAATTAAGATTGGCGAGTTTTTTTACTGTAAGTGAAGT TGAAGCTTTGTTGAATTCCGTTGACACAAATAATCTCAGTGACGTGCACT TTATGGTATATTATAATGCGAAATGTTCTTTATACATCAAGAAGGGTTGC TTTGATTTGGCCGAACAAGTCATGAAGAATTGGAAAGAACATTTACACAg aaaacctttttctcgattATGGCActttaatttcacaaaaaagaatTGCT TTTTACTTTACAAGAAAGGAGATTACAACGAAGCACTACTAGCTTGCGAt gaatttaaacaatatttttttattgatgcAGATGTTTTAATTTCGGAAGC AttgattttgatcaaattaGGAAAGTTCGACGATGCAGAAGTGTTACTTG ATGACTTTAATCAACGCAATAATGGAATTATCATTGGAATCAGTTCATAC CTGAAATTTCGAAAGCACGACTTTGAGGCAGTAGTAAAGCTCCTTTCTGA TGCGGAAGATGAGCTTTTgtcaaatcttttctttttggtaAATGAATATG CGAAACTGCATCGACAACTCGAAAATAATAAATCGAGAGAAATAGTTGAA CGATGTTTGCAAATGAAAAAAGTTGTAAATGAATTATTTCAAGTACAATT GGATATGATTTATCTTTGAAATCTTATTATATGGAATTATGATTAGAATT GGATCTTTGGGAATTACTCCAACTTTTAAGTGCAGGCTATACTGATAAGT TTTTCAAGTGCCAGCAAtgtaatacactcttctcgagatgcataaattta ttgttgtcctcgtttttaaaaacatttcattgctatcaaattatacattt aaaccaatttaaattcccaaaaggcaaacattaactctaaaacaaaagta cttgaaattcaaaatgtctcatgaggtgtaaacaacacaatt

Coding sequence (CDS) from alignment at scaffold_485:27172..28813

>TCONS_00068554 ID=TCONS_00068554|Name=TCONS_00068554|organism=Clytia hemisphaerica|type=CDS|length=1368bp|location=Sequence derived from alignment at scaffold_485:27172..28813 (Clytia hemisphaerica)
NACaatcgaaaaatcaataaaaagacaTTCAGCTATTTTGATAAAGTTGA
CGAATTTGAATTAAATGAAATCATCTCACTGCTTGGTCAATATTCATTGG
TCAACGAGCGAAATGATTGTTTAGAAATTCACAGTCTTGTGCAAAAAGTT
ATCCGATATCGTATTGAACAGAAACAATTTGTTGAGGACGAATGTCCGTT
GACACTGCTTGAAGGTGTTCTTTTGAAAATCGATGTTTCTATTAAAGATT
TGGTTATAAATTGCGACTATGAGGATTTATGGTACATTCATGTTTTTCGT
TTGATCATGAGTGGTGCACTCAATGCTATCAACTTTGATGCTTACCTGGT
GTTAGATATAGCCGCAGGCAGAATGGAGATGGAAAACTTATACCTACTTG
CTGAACTTTTTGTTCAAGTTTTGTTAAAACAATATAGGTTGTCTCGAGAT
GTGAAAACTTTTGATATGCTGTTGTGTTGTCATCGTCGATTCTTATATGT
GTCAAATCAATTAGGTTTACTTAATGTGaatgagattttttcttttgaaa
aagagttTTCCACAGAACTTGAAGAGCATTCTGTAGAAGTTTACCAGTGG
AAGCTAAAGCAAGCTGAGTTATATAATATACATGGAAGAGCGTTGTTATT
CAATAATATCGTTCGAAATTTATTCAATGAACTGGTCAAGAAGAAAGGAT
TTGATGATATTAAATTAAGATTGGCGAGTTTTTTTACTGTAAGTGAAGTT
GAAGCTTTGTTGAATTCCGTTGACACAAATAATCTCAGTGACGTGCACTT
TATGGTATATTATAATGCGAAATGTTCTTTATACATCAAGAAGGGTTGCT
TTGATTTGGCCGAACAAGTCATGAAGAATTGGAAAGAACATTTACACAga
aaacctttttctcgattATGGCActttaatttcacaaaaaagaatTGCTT
TTTACTTTACAAGAAAGGAGATTACAACGAAGCACTACTAGCTTGCGAtg
aatttaaacaatatttttttattgatgcAGATGTTTTAATTTCGGAAGCA
ttgattttgatcaaattaGGAAAGTTCGACGATGCAGAAGTGTTACTTGA
TGACTTTAATCAACGCAATAATGGAATTATCATTGGAATCAGTTCATACC
TGAAATTTCGAAAGCACGACTTTGAGGCAGTAGTAAAGCTCCTTTCTGAT
GCGGAAGATGAGCTTTTgtcaaatcttttctttttggtaAATGAATATGC
GAAACTGCATCGACAACTCGAAAATAATAAATCGAGAGAAATAGTTGAAC
GATGTTTGCAAATGAAAAAAGTTGTAAATGAATTATTTCAAGTACAATTG
GATATGATTTATCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042753XLOC_042753Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068554-proteinTCONS_00068554-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068554-exon-scaffold_485-1491911889:27172..28813TCONS_00068554-exon-scaffold_485-1491911889:27172..28813Clytia hemisphaericaexon
TCONS_00068554-exon-scaffold_485-1510915933:27172..28813TCONS_00068554-exon-scaffold_485-1510915933:27172..28813Clytia hemisphaericaexon
TCONS_00068554-exon-scaffold_485-1575043694:27172..28813TCONS_00068554-exon-scaffold_485-1575043694:27172..28813Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:27172..28813 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.63834 0.317175 0 0.257275 0.251255 0.157059 0.781897 1.54255 0.825409 1.16755 1.06123 0.764995 1.82192 1.1629 1.94166 1.83198 0.80018 1.09642 1.34475 1.99508 2.24243 1.97417 1.79847 1.82595 1.99917 3.09466 3.3397 2.808 1.2097 1.45573
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top