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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068553 ID=TCONS_00068553|Name=TCONS_00068553|organism=Clytia hemisphaerica|type=transcript|length=1734bp
AGGACCAAGAAAAAGCAATTTGTATTCGACGAGCCATCATCAAGTGGAGT
CTTTTCTTTGATATCGAATTCAAGCCAAGACTTTGTTCCCATCATATGTG
TTGATGAAGCGTATACGTTTTTAAACGAAGTTTTCATCGGGAAGAAGGAG
AGTATTTCCATGGATCGTCTATGCAAGTTGTATGATGGCGATTATTGGTA
CAAACTAAATGGAACTTCGGCAAAGAGAAGGGGTGTGGCAAGTGCCCGTG
CAAGCATGTGTTGCCTGTTAACAccgaaaaagtttttagaaCAGTTGTGG
CCAAAAATCATCGACACCAACAACGGTCTTGCTGATCGTATCATGCTCTT
CCACGTTCAGCAGGAGGAAAAAAGCTTGGAAGACatcgaaaaaatagcaa
atgaACTAGACACTGGCCCATTGAAAGACCTCACGGAAGTTTACAATTAC
ATATATGACGAACACCACACAGATCAACCGCCCAGGGTCTACCAGCTAGA
TCCTGAGGCGAAAACCATATTTTACGCTTTCAACAGGGCCCGGCTCTGTA
ATTCGGAAAATGTGGCACCCAAGATGACTGCATCTAAAACAACCAAACAA
ATAATGAAGTTGACTCTGACCCTTCATATTCTTTATCATCGCCTTCGATG
TGCCCTTAATCCGGAAATTCAGCATACACCAACACCACTACTGATTAAAC
CTGATATACTCAACAATGCTATATCACTCCATTCAACCCTTCAAGCTTAT
AGTGAGCTAGCAGCAACTGCAtgTGTCAAATTGAATACATCTGAGAGTGT
GCGATTCGAAGTACTGATGACAGATATTCAGGAGAAGATATTGTCCTTGC
CTGgaccatttcacagtcgaaaaaGAATTTACAACTCCTATTCCTCGGCA
AACAGACCCACCCCTGATCAAACCCAACAGGCAATGGAGAATTTACAAAG
CCTCAAATTTGGATTTGTAAAAAAGATCGGAAAAGCACATGTCTTTTACA
AGCAATTACCATCAAAAGTCATCGATTTTACGTCCAGTAAAATGACAGAA
GAGGCGTACAAAATGGTTTTTGTATCAAAGGACCCTATCCCTACcaaaaa
gttttataaaaagatGATCGATGAACACCCTCAAAAGGACCTTCTCTTAG
TAGAAGATGGATTTCATCAGAGTGATGATGAAGCAGATTAATAATTTCTT
TCTCTTATTCTTTGTTTGGATTATCTACTTGATATTTGCTGGTCTATTGC
TTATTTACATGATGGATATTGGTATTGATTTATAAACACAAAGTACGATG
CTACCGCCCAATGCGATATTCTTTCGTAAATATATATCGTATCACTGAAA
ATGAACTATCAATCTTGACATGATTTACTGTTAAACACTTTTCAAAGATG
TGAAACTTACTGTAACTTTTAAAACACTTTACACTTACAATCGCCATTGG
TTTTGCTTAAATTAACAAAACGATTTCTGAGCTATGGACTCTGTGTTCTc
cttttgaaacattttgacGAGAATTGTGCTTTTTATTCCCAgctattctt
acgtttttagtCTCGTGTAGGTTTAAGAgattggctgcgtttagaccata
AAGTTTAAGATAGTGCAGTGTACCTtaaaggaactaattttcgcggtaac
tAATTTTCGGGGAACTagttttcgcgggaactaattttcgcgtttttggg
tgtctaccgcgaaaattagttccgggAAATGGAA Run BLAST on NCBI protein sequence of TCONS_00068553-protein >TCONS_00068553-protein ID=TCONS_00068553-protein|Name=TCONS_00068553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp
RTKKKQFVFDEPSSSGVFSLISNSSQDFVPIICVDEAYTFLNEVFIGKKE
SISMDRLCKLYDGDYWYKLNGTSAKRRGVASARASMCCLLTPKKFLEQLW
PKIIDTNNGLADRIMLFHVQQEEKSLEDIEKIANELDTGPLKDLTEVYNY
IYDEHHTDQPPRVYQLDPEAKTIFYAFNRARLCNSENVAPKMTASKTTKQ
IMKLTLTLHILYHRLRCALNPEIQHTPTPLLIKPDILNNAISLHSTLQAY
SELAATACVKLNTSESVRFEVLMTDIQEKILSLPGPFHSRKRIYNSYSSA
NRPTPDQTQQAMENLQSLKFGFVKKIGKAHVFYKQLPSKVIDFTSSKMTE
EAYKMVFVSKDPIPTKKFYKKMIDEHPQKDLLLVEDGFHQSDDEAD Run BLAST on NCBI transcript from alignment at scaffold_485:655370..659179- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068553 ID=TCONS_00068553|Name=TCONS_00068553|organism=Clytia hemisphaerica|type=transcript|length=3810bp|location=Sequence derived from alignment at scaffold_485:655370..659179- (Clytia hemisphaerica)
AGGACCAAGAAAAAGCAATTTGTATTCGACGAGCCATCATCAAGTGGAGT
CTTTTCTTTGATATCGAATTCAAGCCAAGACTTTGTTCCCATCATATGTG
TTGATGAAGCGTATACGTTTTTAAACGAAGTTTTCATCGGGAAGAAGGAG
AGTATTTCCATGGATCGTCTATGCAAGTTGTATGATGGCGATTATTGGTA
CAAACTAAATGGAACTTCGGCAAAGAGAAGGGGTGTGGCAAGTGCCCGTG
CAAGCATGTGTTGCCTGTTAACACCGAAAAAGTTTTTAGAACAGTTGTGG
CCAAAAATCATCGACACCAACAACGGTCTTGCTGATCGTATCATGCTCTT
CCACGTTCAGCAGGAGGAAAAAAGCTTGGAAGACATCGAAAAAATAGCAA
ATGAACTAGACACTGGCCCATTGAAAGACCTCACGGAAGTTTACAATTAC
ATATATGACGAACACCACACAGATCAACCGCCCAGGGTCTACCAGCTAGA
TCCTGAGGCGAAAACCATATTTTACGCTTTCAACAGGGCCCGGCTCTGTA
ATTCGGAAAATGTGGCACCCAAGATGACTGCATCTAAAACAACCAAACAA
ATAATGAAGTTGACTCTGACCCTTCATATTCTTTATCATCGCCTTCGATG
TGCCCTTAATCCGGAAATTCAGCATACACCAACACCACTACTGATTAAAC
CTGATATACTCAACAATGCTATATCACTCCATTCAACCCTTCAAGCTTAT
AGTGAGCTAGCAGCAACTGCAGTAAGTATTTTATTTAAGTGTTATGAATG
GCGGGATCCAGTAGCGTAGTGGGTCAAGACAGGGGAGACAAAATTAGAAT
TTTGGCTAAAGCTCCCCCTTGTAGGCCTATTTTGATTTTGGCTGAAAATG
TAATGGTTCTGAGCTATGACCAACTGATATAGCGTCGGTAAACAGCCCGT
TTTGGAGCGTAGATCTACGGCTTCCGCCGTCTAAGGGTTGATACCAATGG
CTGGAACAGCCAACCTTTTCTTGAATTTCTCGAGCTGTACTTAATATTTT
TTCATGGAATTTTTTGTGCCCGCTAACGCAAAATGGAAATACCTAAAATG
TGACAAAGCCTACGGATTTTTCCAAAACATATGACATGATTCCCAAGTGT
ATATTAAAGTTTATTCGCTTTAACTGTGCACTCATTTTTCTTACCATGTG
GAAACCACTCTCAAGGGAATTTCTCTGATTAGGCAGACATGACTTCTACA
TAGTAGCAAAAAAGAGTGCACACTTAAAGCGAATTGACTTTAGTGATCAC
TAAACTGTCAATTATAGTAGTGATATTTTTGGAGTTGTGTTTGAAATGAC
GGTAATTGCATTACTCTCGGGTACTTAATAGCCGCGGGGTTTGGAATAAG
CGGGGGGGGGGGGGGGTGGGAAAAAATCTCAAAACTTAATAAGGGGGGGG
GGGGTTGGAATAAAAAAGTCCTGGGTGGGAAATTTTTGAAAAGGAGGCGA
ATACATCAGAATTAGGACAAAAAAGGGAACTTTCAAAAACATCTTTCCAA
AAATTAATGAGCGGGGGGGGGGTTGGAATAAAAAAGTCCTGGGTGGGAAA
TTTTTGAAAAGGAGGCGAATACATCAGAATTAGGACAAAAAAGGGAACTT
TCAAAAACATCTTTCCAAAAATTAATGAGCGGGGGGGGGGGGTTGGAATA
ACAATGTCCTGGGTGGAAAATTTTCGAAAAATTAATTAGCAAGGGGGACG
GCTATTAGGTATACCCGAGAGTATCAACTTTGACTTGGTCTAAGATCTTA
TTTTTTGCGTTGATGTACGATGAATGAAATTGCGATTTGTCATCACAACA
TACAATATGTAAGCTGTGATTTTTATGGTAGAAAATATGCTGGAAAAACG
GTTTTGGGCAATTTCTAAAGACTTCATCATTAGTTTTTCATGATATTTTG
CTCAAAAAGGTGTGTGTTAGCAATGCTCAAATGACCTAGTAATTTGATTC
CGTCCGAAAAAAAGAAAATTTGCCGCAAATCGCTATTTTCTGGTTCTCAT
TTTTCACATAAAATACTGTTGATAGCTCAGTCTTTTCAAAAAATTGCCGG
AACAACCGATTGTCAACCTGGAAAAGCGGGCTTCCTTCAATTTGTCGATA
TTGCTCTTTCATTCGCTTTTTCGTTCGTTCGATCGTTCGTTCGTTTTCAG
TGCCATTAATGTCTATATTTTCTTTCAATTGACTAACTTTCTTTATCAGA
TAGGTCAAATCAGTATCCAGCTTGTTTATCAAATGTTTCATATTTCTTGG
CCTTAAATCACTCAAAAATACTGAAAAGTTTGATACTAAACAGTACAGAC
TTGGTGAAACACACACACAAGAACATTTCTACTTATGGAAGTGGTTCGAC
TCGATACTTTTTTTCCGGACACCTTGTACTGTTCAAAAAGGATAACATAT
CATAACCCCCGTTTTTTATTAAAAATTTGGAGATTTGATTTTTCACAGAA
AAGTGCTACCAAGGGGTATTTCGGGTCCCATATATACTGAAGGACTTTTC
CGTTTGCTTTGAAATTTGACAACCTTCTTAACCTAAGGTTGAAATACCAC
TAGTGTAAAAATGAACGTTATAGCATGAGTAGAAAACAAGCTCAATTTGT
TTAATCGCAAATTTAACCTCTAAAAATCGCTAATTTTCCAACCAAAAATA
CATTCAAATGTAGCGCTTTTAATTCTCTAAGACAAGCAAAAAAAATTTTT
TTTGACTATCAAAAGTTACAGACATTTTCTTGTTTCCAACACTGCCAATT
ATATCCGAATACACTCTAGGAAAGATTTCTTTATTTTTTATATTTAGTGT
GTCAAATTGAATACATCTGAGAGTGTGCGATTCGAAGTACTGATGACAGA
TATTCAGGAGAAGATATTGTCCTTGCCTGGACCATTTCACAGTCGAAAAA
GAATTTACAACTCCTATTCCTCGGCAAACAGACCCACCCCTGATCAAACC
CAACAGGCAATGGAGAATTTACAAAGCCTCAAATTTGGATTTGTAAAAAA
GATCGGAAAAGCACATGTCTTTTACAAGCAATTACCATCAAAAGTCATCG
ATTTTACGTCCAGTAAAATGACAGAAGAGGCGTACAAAATGGTTTTTGTA
TCAAAGGACCCTATCCCTACCAAAAAGTTTTATAAAAAGATGATCGATGA
ACACCCTCAAAAGGACCTTCTCTTAGTAGAAGATGGATTTCATCAGAGTG
ATGATGAAGCAGATTAATAATTTCTTTCTCTTATTCTTTGTTTGGATTAT
CTACTTGATATTTGCTGGTCTATTGCTTATTTACATGATGGATATTGGTA
TTGATTTATAAACACAAAGTACGATGCTACCGCCCAATGCGATATTCTTT
CGTAAATATATATCGTATCACTGAAAATGAACTATCAATCTTGACATGAT
TTACTGTTAAACACTTTTCAAAGATGTGAAACTTACTGTAACTTTTAAAA
CACTTTACACTTACAATCGCCATTGGTTTTGCTTAAATTAACAAAACGAT
TTCTGAGCTATGGACTCTGTGTTCTCCTTTTGAAACATTTTGACGAGAAT
TGTGCTTTTTATTCCCAGCTATTCTTACGTTTTTAGTCTCGTGTAGGTTT
AAGAGATTGGCTGCGTTTAGACCATAAAGTTTAAGATAGTGCAGTGTACC
TTAAAGGAACTAATTTTCGCGGTAACTAATTTTCGGGGAACTAGTTTTCG
CGGGAACTAATTTTCGCGTTTTTGGGTGTCTACCGCGAAAATTAGTTCCG
GGAAATGGAA Coding sequence (CDS) from alignment at scaffold_485:655370..659179- >TCONS_00068553 ID=TCONS_00068553|Name=TCONS_00068553|organism=Clytia hemisphaerica|type=CDS|length=2382bp|location=Sequence derived from alignment at scaffold_485:655370..659179- (Clytia hemisphaerica)
TGTGTCAAATTGAATACATCTGAGAGTGTGCGATTCGAAGTACTGATGAC
AGATATTCAGGAGAAGATATTGTCCTTGCCTGGACCATTTCACAGTCGAA
AAAGAATTTACAACTCCTATTCCTCGGCAAACAGACCCACCCCTGATCAA
ACCCAACAGGCAATGGAGAATTTACAAAGCCTCAAATTTGGATTTGTAAA
AAAGATCGGAAAAGCACATGTCTTTTACAAGCAATTACCATCAAAAGTCA
TCGATTTTACGTCCAGTAAAATGACAGAAGAGGCGTACAAAATGGTTTTT
GTATCAAAGGACCCTATCCCTACCAAAAAGTTTTATAAAAAGATGATCGA
TGAACACCCTCAAAAGGACCTTCTCTTAGTAGAAGATGGATTTCATCAGA
GTGATGATGAAGCAGATTAAAGGACCAAGAAAAAGCAATTTGTATTCGAC
GAGCCATCATCAAGTGGAGTCTTTTCTTTGATATCGAATTCAAGCCAAGA
CTTTGTTCCCATCATATGTGTTGATGAAGCGTATACGTTTTTAAACGAAG
TTTTCATCGGGAAGAAGGAGAGTATTTCCATGGATCGTCTATGCAAGTTG
TATGATGGCGATTATTGGTACAAACTAAATGGAACTTCGGCAAAGAGAAG
GGGTGTGGCAAGTGCCCGTGCAAGCATGTGTTGCCTGTTAACACCGAAAA
AGTTTTTAGAACAGTTGTGGCCAAAAATCATCGACACCAACAACGGTCTT
GCTGATCGTATCATGCTCTTCCACGTTCAGCAGGAGGAAAAAAGCTTGGA
AGACATCGAAAAAATAGCAAATGAACTAGACACTGGCCCATTGAAAGACC
TCACGGAAGTTTACAATTACATATATGACGAACACCACACAGATCAACCG
CCCAGGGTCTACCAGCTAGATCCTGAGGCGAAAACCATATTTTACGCTTT
CAACAGGGCCCGGCTCTGTAATTCGGAAAATGTGGCACCCAAGATGACTG
CATCTAAAACAACCAAACAAATAATGAAGTTGACTCTGACCCTTCATATT
CTTTATCATCGCCTTCGATGTGCCCTTAATCCGGAAATTCAGCATACACC
AACACCACTACTGATTAAACCTGATATACTCAACAATGCTATATCACTCC
ATTCAACCCTTCAAGCTTATAGTGAGCTAGCAGCAACTGCATGTGTCAAA
TTGAATACATCTGAGAGTGTGCGATTCGAAGTACTGATGACAGATATTCA
GGAGAAGATATTGTCCTTGCCTGGACCATTTCACAGTCGAAAAAGAATTT
ACAACTCCTATTCCTCGGCAAACAGACCCACCCCTGATCAAACCCAACAG
GCAATGGAGAATTTACAAAGCCTCAAATTTGGATTTGTAAAAAAGATCGG
AAAAGCACATGTCTTTTACAAGCAATTACCATCAAAAGTCATCGATTTTA
CGTCCAGTAAAATGACAGAAGAGGCGTACAAAATGGTTTTTGTATCAAAG
GACCCTATCCCTACCAAAAAGTTTTATAAAAAGATGATCGATGAACACCC
TCAAAAGGACCTTCTCTTAGTAGAAGATGGATTTCATCAGAGTGATGATG
AAGCAGATTAAAGGACCAAGAAAAAGCAATTTGTATTCGACGAGCCATCA
TCAAGTGGAGTCTTTTCTTTGATATCGAATTCAAGCCAAGACTTTGTTCC
CATCATATGTGTTGATGAAGCGTATACGTTTTTAAACGAAGTTTTCATCG
GGAAGAAGGAGAGTATTTCCATGGATCGTCTATGCAAGTTGTATGATGGC
GATTATTGGTACAAACTAAATGGAACTTCGGCAAAGAGAAGGGGTGTGGC
AAGTGCCCGTGCAAGCATGTGTTGCCTGTTAACACCGAAAAAGTTTTTAG
AACAGTTGTGGCCAAAAATCATCGACACCAACAACGGTCTTGCTGATCGT
ATCATGCTCTTCCACGTTCAGCAGGAGGAAAAAAGCTTGGAAGACATCGA
AAAAATAGCAAATGAACTAGACACTGGCCCATTGAAAGACCTCACGGAAG
TTTACAATTACATATATGACGAACACCACACAGATCAACCGCCCAGGGTC
TACCAGCTAGATCCTGAGGCGAAAACCATATTTTACGCTTTCAACAGGGC
CCGGCTCTGTAATTCGGAAAATGTGGCACCCAAGATGACTGCATCTAAAA
CAACCAAACAAATAATGAAGTTGACTCTGACCCTTCATATTCTTTATCAT
CGCCTTCGATGTGCCCTTAATCCGGAAATTCAGCATACACCAACACCACT
ACTGATTAAACCTGATATACTCAACAATGCTATATCACTCCATTCAACCC
TTCAAGCTTATAGTGAGCTAGCAGCAACTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068553-exon-scaffold_485-1575043694:658409..659179 | TCONS_00068553-exon-scaffold_485-1575043694:658409..659179 | Clytia hemisphaerica | exon |
| TCONS_00068553-exon-scaffold_485-1575043694:655370..656332 | TCONS_00068553-exon-scaffold_485-1575043694:655370..656332 | Clytia hemisphaerica | exon |
| TCONS_00068553-exon-scaffold_485-1510915933:658409..659179 | TCONS_00068553-exon-scaffold_485-1510915933:658409..659179 | Clytia hemisphaerica | exon |
| TCONS_00068553-exon-scaffold_485-1510915933:655370..656332 | TCONS_00068553-exon-scaffold_485-1510915933:655370..656332 | Clytia hemisphaerica | exon |
| TCONS_00068553-exon-scaffold_485-1491911889:658409..659179 | TCONS_00068553-exon-scaffold_485-1491911889:658409..659179 | Clytia hemisphaerica | exon |
| TCONS_00068553-exon-scaffold_485-1491911889:655370..656332 | TCONS_00068553-exon-scaffold_485-1491911889:655370..656332 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:655370..659179 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR025048 | DUF3987 |
Blast
The following BLAST results are available for this feature:
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