TCONS_00068547 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068547
Unique NameTCONS_00068547
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2263

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068547 ID=TCONS_00068547|Name=TCONS_00068547|organism=Clytia hemisphaerica|type=transcript|length=2263bp
CGCTACATTCTCATATTACACTAAGAGATCACATATAGTATGTGAGTAGC
CAATACGGTTCCTCTCATAGTAGAGAACAAATCATCTGGCCTTGAAGGTA
AGACTTTATGTGATTTTATATCTTtaagaaaacataacaatcaTAACAGT
TTACCTTTTTCTACTTGAGGTTTAGTAGGGCCCGTTGACTTTATTGTAGT
TCGAAGAGGTATGTTAGTGGTATCAGACGAATCTGTTGTAGATTTTGACC
AATTATGAGGCATGGTTGTGGTATCAGTCGAATCTGTTGTAGATTTTGAC
CAATTATGAGACATGGTTGTGGTATCAGACGAATCTGTTGTAGATTTCGA
CCAATTATGAGGCATGGTTGTAGTATCAGTCGAATCTGTTGTAGATTTTG
ACCAATTATGCGGCATGGTTGTGGTATCAGTCGAATCTGTTGTAGATTTT
GACCAATTATGCGGCATGGTTGTGGTATCAGTCGAATCTGTTGTAGATTT
TGACCAATTATGAGGCATGGTTGTGGTATCAGTCGAATCTGTTGTAGATT
TCGACCAATTATCAGACATGGTTGTTGCTTCACTCGTAGTTTCAGTAGat
gatacagttgtagaatcagttgtagacgagtcagtagttAATTCAGTTGT
GGTAccacttgttgtttcagtagaggatacagttgtagaatcagtagtgG
ATTCAGTAGAAGCATCACTGgtagttgtagaatcagttgtagTCGAGTCA
GTAGTTAAttcagttgttgcttcacttgttgtttcagtagttgatacagt
tgtagaatcagtagttGATTCTGTAGTATTCGAACCACCGTTGCCATTGT
TTGGATCGTCTGTTGTTGTTGACGAGTCAGTAGTTGCTTtacttgttgtt
tcagtagtTGAttcagttgtagaatcagtagaAGCATCACTGGTAGTTTC
AGTGGAAGACTCAGTGGTGGAttcagttgttgcttcacttgtagttccag
tagacgatccagttgtagaatcagttgtagacgagtcagtagttAATTCA
GTAGTTGCTTCACTTGTAGTTccagtagacgatacagttgaagaatcagt
tgtagacgagtcagtagttGATTCAGTTGTGGTAccacttgttgtttcag
tagaggatacagttgtagaatcagtagttGATTCTGTATTATTCGAACCA
CCGTTGCCATTGTTTGGATCATCTGTTGTTGTTGACGAGTCAGTAGTTGC
TTCACTTGTTGTTACAGTTATAGAATCAGTAGTGGATTCAGTAGAAGCAT
CACTGGTAGTTTCAGTGGAAGACTCAGTGGTGGATTCAGTTTTTGCTTCA
CTTGTAGTTccagtagacgatacagttgtagaatcagttgtagacgagtc
agtagttATTTCAGTAGTTGCTTCACTTGTTGTTTCAGTAGAGGATTCAG
TTGTAGAATCAGTAGTGGATTCAGTAGAAGGATCACTTGTAGTTTTAGTG
GAAGACTCAGTGGTGGAttcagttgttgcttcacttgtagttccagtaga
cgatacagttgtagaatcagttgtagacgagtcagtagttATTTCAGTAG
TTgcttcacttgttgtttcagtagaggattcagttgtagaatcagtagtg
GATTCAGTAGAAGGATCACTTGTAGTTTTAGTGGAAGACTCAGTGGTGGA
ttcagttgttgcttcacttgtagttccagtagacgatacagttgtagaat
cagttgtagacgagtcagtagttaattcagttgtggtatcacttgttgtt
tcagtagacGATACAGTTGTAAAATCAGTAGTAGAAGCATCACTGGTAGT
TTCAGTGGAAGACTCAGTTGTGGAttcagttgttgcttcacttgtagttt
cagtagacgatacagttgtagaatcagttgtagTCGAGTCAGTAGTTAAT
TCAGTAGTTGCTTCACTTGTTGTTTGAGTAGTTGAttcagttgtagaatc
agtagcGGACTCAGTAGAAGCATCTCTGGTAGTTTCAGTGGAAGACTCAG
TGGTGGATTCAGTTGTTGCTTCGCTTGTAGATCCAGTAGACGAtccagtt
gtagaatcagttgtagTCGAGTGAGTAGTTAATTCAGTAGTTgcttcact
tgttgtttcagtagtTGAttcagttgtagaatcagtagttGATTCTGTAG
TATTCGAACCACCGTTGCCATTGTTTGGATCGTCTGTTGTTGTTGACGAG
TCAGTAGTTGCTT
Run BLAST on NCBI

transcript from alignment at scaffold_485:503649..506115-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068547 ID=TCONS_00068547|Name=TCONS_00068547|organism=Clytia hemisphaerica|type=transcript|length=2467bp|location=Sequence derived from alignment at scaffold_485:503649..506115- (Clytia hemisphaerica)
CGCTACATTCTCATATTACACTAAGAGATCACATATAGTATGTGAGTAGC
CAATACGGTTCCTCTCATAGTAGAGAACAAATCATCTGGCCTTGAAGGTA
AGACTTTATGTGATTTTATATCTTTAAGAAAACATAACAATCATAACAGT
TTACCTTTTTCTACTTGAGGTTTAGTAGGGCCCGTTGACTTTATTGTAGT
TCGAAGAGGTATGTTAGTGGTATCAGACGAATCTGTTGTAGATTTTGACC
AATTATGAGGCATGGTAGTGGTATCAGACGAATCTGTTGTAGATTTTGAC
CAATTATGAGGCATGGTTGTGGTATCAGACGAATCTGTTGTAGATTTTGA
CCAATTATGAGACATGGTAGTGGTATCAGACGAATCTGTTGTAGATTTTG
ACCAATTATGAGGCATGGTTGTGGTATCAGTCGAATCTGTTGTAGATTTT
GACCAATTATGAGACATGGTTGTGGTATCAGACGAATCTGTTGTAGATTT
CGACCAATTATGAGGCATGGTTGTAGTATCAGTCGAATCTGTTGTAGATT
TTGACCAATTATGCGGCATGGTTGTGGTATCAGTCGAATCTGTTGTAGAT
TTTGACCAATTATGAGGCATGGTTGTGGTATCAGTCGAATCTGTTGTAGA
TTTTGACCAATTATGCGGCATGGTTGTGGTATCAGTCGAATCTGTTGTAG
ATTTTGACCAATTATGAGGCATGGTTGTGGTATCAGTCGAATCTGTTGTA
GATTTCGACCAATTATCAGACATGGTTGTTGCTTCACTCGTAGTTTCAGT
AGATGATACAGTTGTAGAATCAGTTGTAGACGAGTCAGTAGTTAATTCAG
TTGTGGTACCACTTGTTGTTTCAGTAGAGGATACAGTTGTAGAATCAGTA
GTGGATTCAGTAGAAGCATCACTGGTAGTTGTAGAATCAGTTGTAGTCGA
GTCAGTAGTTAATTCAGTTGTTGCTTCACTTGTTGTTTCAGTAGTTGATA
CAGTTGTAGAATCAGTAGTTGATTCTGTAGTATTCGAACCACCGTTGCCA
TTGTTTGGATCGTCTGTTGTTGTTGACGAGTCAGTAGTTGCTTTACTTGT
TGTTTCAGTAGTTGATTCAGTTGTAGAATCAGTAGAAGCATCACTGGTAG
TTTCAGTGGAAGACTCAGTGGTGGATTCAGTTGTTGCTTCACTTGTAGTT
CCAGTAGACGATCCAGTTGTAGAATCAGTTGTAGACGAGTCAGTAGTTAA
TTCAGTAGTTGCTTCACTTGTAGTTCCAGTAGACGATACAGTTGAAGAAT
CAGTTGTAGACGAGTCAGTAGTTGATTCAGTTGTGGTACCACTTGTTGTT
TCAGTAGAGGATACAGTTGTAGAATCAGTAGTTGATTCTGTATTATTCGA
ACCACCGTTGCCATTGTTTGGATCATCTGTTGTTGTTGACGAGTCAGTAG
TTGCTTCACTTGTTGTTACAGTTATAGAATCAGTAGTGGATTCAGTAGAA
GCATCACTGGTAGTTTCAGTGGAAGACTCAGTGGTGGATTCAGTTTTTGC
TTCACTTGTAGTTCCAGTAGACGATACAGTTGTAGAATCAGTTGTAGACG
AGTCAGTAGTTATTTCAGTAGTTGCTTCACTTGTTGTTTCAGTAGAGGAT
TCAGTTGTAGAATCAGTAGTGGATTCAGTAGAAGGATCACTTGTAGTTTT
AGTGGAAGACTCAGTGGTGGATTCAGTTGTTGCTTCACTTGTAGTTCCAG
TAGACGATACAGTTGTAGAATCAGTTGTAGACGAGTCAGTAGTTATTTCA
GTAGTTGCTTCACTTGTTGTTTCAGTAGAGGATTCAGTTGTAGAATCAGT
AGTGGATTCAGTAGAAGGATCACTTGTAGTTTTAGTGGAAGACTCAGTGG
TGGATTCAGTTGTTGCTTCACTTGTAGTTCCAGTAGACGATACAGTTGTA
GAATCAGTTGTAGACGAGTCAGTAGTTAATTCAGTTGTGGTATCACTTGT
TGTTTCAGTAGACGATACAGTTGTAAAATCAGTAGTAGAAGCATCACTGG
TAGTTTCAGTGGAAGACTCAGTTGTGGATTCAGTTGTTGCTTCACTTGTA
GTTTCAGTAGACGATACAGTTGTAGAATCAGTTGTAGTCGAGTCAGTAGT
TAATTCAGTAGTTGCTTCACTTGTTGTTTGAGTAGTTGATTCAGTTGTAG
AATCAGTAGCGGACTCAGTAGAAGCATCTCTGGTAGTTTCAGTGGAAGAC
TCAGTGGTGGATTCAGTTGTTGCTTCGCTTGTAGATCCAGTAGACGATCC
AGTTGTAGAATCAGTTGTAGTCGAGTGAGTAGTTAATTCAGTAGTTGCTT
CACTTGTTGTTTCAGTAGTTGATTCAGTTGTAGAATCAGTAGTTGATTCT
GTAGTATTCGAACCACCGTTGCCATTGTTTGGATCGTCTGTTGTTGTTGA
CGAGTCAGTAGTTGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042749XLOC_042749Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068547-exon-scaffold_485-1575043694:505857..506115TCONS_00068547-exon-scaffold_485-1575043694:505857..506115Clytia hemisphaericaexon
TCONS_00068547-exon-scaffold_485-1575043694:505551..505703TCONS_00068547-exon-scaffold_485-1575043694:505551..505703Clytia hemisphaericaexon
TCONS_00068547-exon-scaffold_485-1575043694:503649..505499TCONS_00068547-exon-scaffold_485-1575043694:503649..505499Clytia hemisphaericaexon
TCONS_00068547-exon-scaffold_485-1510915933:505857..506115TCONS_00068547-exon-scaffold_485-1510915933:505857..506115Clytia hemisphaericaexon
TCONS_00068547-exon-scaffold_485-1510915933:505551..505703TCONS_00068547-exon-scaffold_485-1510915933:505551..505703Clytia hemisphaericaexon
TCONS_00068547-exon-scaffold_485-1510915933:503649..505499TCONS_00068547-exon-scaffold_485-1510915933:503649..505499Clytia hemisphaericaexon
TCONS_00068547-exon-scaffold_485-1491911889:505857..506115TCONS_00068547-exon-scaffold_485-1491911889:505857..506115Clytia hemisphaericaexon
TCONS_00068547-exon-scaffold_485-1491911889:505551..505703TCONS_00068547-exon-scaffold_485-1491911889:505551..505703Clytia hemisphaericaexon
TCONS_00068547-exon-scaffold_485-1491911889:503649..505499TCONS_00068547-exon-scaffold_485-1491911889:503649..505499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:503649..506115 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.175439	0.134998	0.254239	0.1148	0	0	0	0	0	0	0	0	0.439449	0	19.5379	2.03782	0	0	0	0	0	0	0.0447012	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068547 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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