TCONS_00068534 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068534
Unique NameTCONS_00068534
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length173

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068534 ID=TCONS_00068534|Name=TCONS_00068534|organism=Clytia hemisphaerica|type=transcript|length=173bp
AACTGCTAACTACCAGAAAGCTAACCATGATAGTGAAAAAGTTCATATCT
TCAACGATCCCGAAATCTAATAGTTCTGACCATATTATAAGGACTATTTT
GGATGTTCCGTGTTTATAATTTCATGCAACATTTACTCGACCTCAAGAGG
AGGTCCgaacaaaaatgattttg
Run BLAST on NCBI

transcript from alignment at scaffold_485:268285..268514-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068534 ID=TCONS_00068534|Name=TCONS_00068534|organism=Clytia hemisphaerica|type=transcript|length=230bp|location=Sequence derived from alignment at scaffold_485:268285..268514- (Clytia hemisphaerica)
AACTGCTAACTACCAGAAAGCTAACCATGATAGTGAAAAAGTTCATATCT
TCAACGATCCCGAAATCTAATAGTTCTGACCATATTATAAGGACTATTTT
GGATGTTCCGTGTTTATAATTTCATGCAACATTTACTAGACCTCAAGAGG
AGGTCNCGGATGATCGGTGTTTATAATTTCATGCAACATTTACTCGACCT
CAAGAGGAGGTCCGAACAAAAATGATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042740XLOC_042740Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068534-exon-scaffold_485-1575043694:268385..268514TCONS_00068534-exon-scaffold_485-1575043694:268385..268514Clytia hemisphaericaexon
TCONS_00068534-exon-scaffold_485-1575043694:268285..268327TCONS_00068534-exon-scaffold_485-1575043694:268285..268327Clytia hemisphaericaexon
TCONS_00068534-exon-scaffold_485-1510915933:268385..268514TCONS_00068534-exon-scaffold_485-1510915933:268385..268514Clytia hemisphaericaexon
TCONS_00068534-exon-scaffold_485-1510915933:268285..268327TCONS_00068534-exon-scaffold_485-1510915933:268285..268327Clytia hemisphaericaexon
TCONS_00068534-exon-scaffold_485-1491911889:268385..268514TCONS_00068534-exon-scaffold_485-1491911889:268385..268514Clytia hemisphaericaexon
TCONS_00068534-exon-scaffold_485-1491911889:268285..268327TCONS_00068534-exon-scaffold_485-1491911889:268285..268327Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:268285..268514 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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