TCONS_00068529 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068529
Unique NameTCONS_00068529
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068529 ID=TCONS_00068529|Name=TCONS_00068529|organism=Clytia hemisphaerica|type=transcript|length=1271bp
TTTATGAAATACTTAAAAAGGAAAGTTCAAAATATGGGGTATTAATCCTG
TATATTACCGTAAAGGTAGATGACCCTCCCATCTCGGTAAGGCACTTTCT
GCTTCTTAACAAAAACGCCTCCATAAGAAGAATTTTTTGTGAAACGAGTG
GTATTACAGACAGATGACGATGTATATTTATCAATGTCAGCAACTTTGAT
TAGATTCGCGCTTAGATTACAAGAAGCAAGAATCGACATACGGTTTGTGC
TTGATTTACAATGAGGAGATTTTTGAATGTTCTGTTGGTAACAATTTTTT
ACTGTTTGGtgttatttttgaaatgttttgaaagtttgccAGTGACAAAT
CAAGTTGTGTTGGATCATCATTCGTTGGTGCGATTGAAACAATGGGGTTA
CATCAGTTCTGATGATTCagaagtgaaaagtaataccAACCCTATCCAGC
AACTGAGACTCACTCATAAATTGGTTGACGCGTTAAAAACTTTCCAaagG
TTCGCTTATTTGGAGCCAACCGGTCGTTTGGATAATGCAACCCGAGAAAA
GATGGCTGCACCGAGATGCGGAATGCCTGATGTCATCCCCGCAGAAATTA
AAAACCGTATTAAAAAACGATTCGCTGCGCAAGGCTCCAAATGGCAAAAC
AGGGTGGTCACGTGGCAACTGGAGAACACAAATAACGACGGATTAACGGT
GGCACAAGTTCGTGAATACATGACAAGATCACTCAAAAAGTGGTCTGACG
CTGCAAACATCGACTTCAGAGAAATCCCTCCGACTCCAGCAGGCCCGCAA
GCACCGGCCTCTCAGATCCGAGTACAGTTTGGTCAAGGGAACCATGGTGA
TCAGTTTCCTTTCGATGGGCCTTCAGGGACACTGGCTCATGCTTTCTTCC
CTCTCAGCAATGTTGGTTTATCAGGGGACATCCACTTCGATGATGCTGAG
CGTTACACCATCCTTGATCCACCACGTAGTAGTGGCCTCATCAAATTCTA
CTGGGTAGCGGTGCACGAGTTGGGACATTCCCTCGGGTTATCACACTCTG
AGTTGTTTGGTGCGATCATGTATCCTTTTTACACGCACTTCCCTGGATTG
GAATTCAACCTGACGCAAGATGATATTCTCGGCATACAATCCATTTATGG
CGAGAAATCAGGGGCGTTCGGTCCTTCTGCTCCACCCTCTCCTTTCACCA
CCCTGGGGTTTGTTTTGGTTGGCAGTCTGATACATTGGTTGTTGATGTTG
TAAAGCATTCATCTCCTTCGT
Run BLAST on NCBI

transcript from alignment at scaffold_485:153556..157461-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068529 ID=TCONS_00068529|Name=TCONS_00068529|organism=Clytia hemisphaerica|type=transcript|length=3906bp|location=Sequence derived from alignment at scaffold_485:153556..157461- (Clytia hemisphaerica)
TTTATGAAATACTTAAAAAGGAAAGTTCAAAATATGGGGTATTAATCCTG
TATATTACCGTAAAGGTAGATGACCCTCCCATCTCGGTAAGGCACTTTCT
GCTTCTTAACAAAAACGCCTCCATAAGAAGAATTTTTTGTGAAACGAGTG
GTATTACAGACAGATGACGATGTATATTTATCAATGTCAGCAACTTTGAT
TAGATTCGCGCTTAGATTACAAGAAGCAAGAATCGACATACGGTTTGTGC
TTGATTTACAATGAGGAGATTTTTGAATGTTCTGTTGGTAACAATTTTTT
ACTGTTTGGTGTTATTTTTGAAATGTTTTGAAAGTTTGCCAGTGACAAAT
CAAGTTGTGTTGGATCATCATTCGTTGGTAAGGTTGGACTACGTTTTTTA
AGTGTGCCAAACTAAGTGTTTTAGTTATTTTGCAAGGTTTGAGATGTTTA
AAGGGCCGTCCATATTGTGCATATGTAGTTAGGGGGGAGAAGTCAAGAGG
GTTTACCAAAAGCGTACAACTATTGTTTAATTGACGGCATTTCTATAGTT
CTCCGTGTGTACAAGGGGGAGAGGGTGTCAAATATTTGGATGACCCTCAG
GGTGATGTCACTTTTCGAGGGACATTTTATAATTGCTAAAAATGAAATTC
CATTTTTGTTTTTCGTTCATTTACTACCTCTCTTTTTCAGGTGCGATTGA
AACAATGGGGTTACATCAGTTCTGATGATTCAGAAGTGAAAAGTAATACC
AACCCTATCCAGCAACTGAGACTCACTCATAAATTGGTTGACGCGTTAAA
AACTTTCCAAAGGTATTTTCAAAATTCATTTTGTATTTTATTTTCGGATA
TTCCACAGCTGTTACAAAAAAAATATTACATCATTGAAACACCTGTCTCT
CTAAACGATGGTCGGTAGCAGGTAGAGAATAAAGAAGCTTCTTCCAAACT
AATGTGGTCGAATAAAAATCCACTTCTGAAAATCAACTATCCCTGGACTA
GGGAATCAATTATTTTTTCCTGTGAAGCACAAATGAAAAAGGAAAATACG
TAATACTTAAGGCAAAAAATTTAAAGTTTTATTGATATATGATATATATA
TCTATTTTTTCAATGAGTCAATATGATGGGATATTATTTTTTTAACTTCC
TACTTCTCACGAACGAACTTATCAAAATCAGGTGATTTACTAATCAATGA
GATAATTGGGCAGTATCAGCGATTTCGATAGATTCCCTGTTGTGGTGTAA
AGGATTATAGAGTAATTAGTTTCGGTTGAAATGAATAGGAGACTAAATTG
ATCAAGCTATTTTAAGATTAAGATTAAAAATTTTTGATGCTTCAGCAAGT
CGGACATTAATCGTTCTGATGAAAAATATACAACAGTTTTAAGCTCTACA
ACAAATTCTACGACAGTTTTATGCGTTGTGTCAAACTCACTCAAACATCC
GACACAAGTGACCCTTTTAACACCTAATCGCAATATTTTTGAAATTCCAG
TCATAAAAAGAATGACTTCCATCCTGGTTTATATCTAGTTCCTCCACCTT
GTTCAAAAAGCCAATCGGCTTATCCAAGAAGTTTTAGTGATGCTTCATTT
AATTTTTTTACCTAACAGCTTCCTTCTCGACATCTCTCTTTTTTAGAAAG
TCTGATACCTCTGGCGATAAAACGCAAAATTCTACATGCCGGGCGACAAT
ATCTGCGTTTGTGTTTGCTGTGTCCATAAGAAAAACAATCCGTCATCCCT
CTCTTTTTGTTTAGGTTCGCTTATTTGGAGCCAACCGGTCGTTTGGATAA
TGCAACCCGAGAAAAGATGGCTGCACCGAGATGCGGAATGCCTGATGTCA
TCCCCGCAGAAATTAAAAACCGTATTAAAAAACGATTCGCTGCGCAAGGC
TCCAAATGGCAAAACAGGGTAAGTGCGATAATAATAATACCAAGTTTACT
TTCATTTTAGTAAGCGTTGCATATTCTGATTTGTAAGTCTTCTGCACAAT
CATCTACTAAAGTCTGACTCATAATCCGCAGCGGAAACAAAAAGGCTGTA
ACTTTTGATAGAATTCGAATTAGATGGCGGTTTTGTGTTCGTTAAAAAGA
TATTCCGGAGTGGAATATCATGTAAAAGAAAAACAATCCAAAAAGAATTG
AAAATGAGGATGGGAAAATGAAGAAAATCAACTACTTGTAAAATTGCGCT
ATGATCTTATAATTATTTTTAGACAGACTTTTAAGAGGATTCTGAATTTG
CATGTAATGAATTGAATCGAGAGGAGTGAACAATAAATTTCTTTACTGTG
GTCTGTCACTAGGTGGTCACGTGGCAACTGGAGAACACAAATAACGACGG
ATTAACGGTGGCACAAGTTCGTGAATACATGACAAGATCACTCAAAAAGT
GGTCTGACGCTGCAAACATCGACTTCAGAGAAATCCCTCCGACTCCAGCA
GGCCCGCAAGCACCGGCCTCTCAGATCCGAGTACAGTTTGGTCAAGGGAA
CCATGGTGATCAGTTTCCTTTCGATGGGCCTTCAGGGACACTGGCTCATG
CTTTCTTCCCTCTCAGCAATGTTGGTAAGAACTTCTGCTTTTCAATATCT
TTCAATTTCAATTTTCGCACAAAATCAGAATGATTCATAAATATACTCTT
TATCCCATGGCCAGAGAAAGAAACATAAAAGCGATTTATTTGAGCACAAC
TTGACTTTACAAACAATCTAAAGCTAAATTTCAGAAATCTTCTTCTGAAT
CTGAAGGCAATGACCTGATTCCTATTTCTTCGATCTGTGAATTCTCACGT
GATATGCCTATAGTCTCTACTGGTCTGGTAATTCTTATCTACCTGATGTA
TAAATGGCAACGTCAATATATCACATGAGATATAGAAAACACGATGGTAG
ATTATATACCTGATAGGTCTTTTCATAAATTACTTTTGAGTGCAACGACT
GCCTCGTTTTTAAACCATCACCAAGTTGATTAAATTCCTTGAGTCTCCAG
TTTTGATTACTTTCTTGACTTTCAATTACCCTTGCAATATTATGAAAGCG
AGGTAAGCGATACTCGTGACGTAATTTATGAAAACGTCTATTGCGATATT
ACCGCAATTGATGGTTACCTTTTACTATTTCTTAAAATCGTTTTCTTCAT
ATATACTAAAAATACGTTTTGCAGGTTTATCAGGGGACATCCACTTCGAT
GATGCTGAGCGTTACACCATCCTTGATCCACCACGTAGTAGTGGCCTCAT
CAAATTCTACTGGGTAGCGGTGCACGAGTTGGGACATTCCCTCGGGTTAT
CACACTCTGAGTTGTTTGGTGCGATCATGTATCCTTTTTACACGCACTTC
CCTGGATTGGAATTCAACCTGACGCAAGATGATATTCTCGGCATACAATC
CATTTATGGTAAGAGAACCGATCTAGGTGTTCAGTTCATTTAAATTTCCT
CTGTTAACAAGTCATAGTTCAGGACCGTCGCATGTTTAGCCCATAAAGGT
CAGTAGTAGTGAATCTTGCTAGTAGAAAGAATAAAATTCAGTGTAAACAC
ATTCTTTTCGTGAGATTTCTATCCAGGAATTTTATTTCCAGAAACTTTTT
TACGATTAATAATCAAGTTTGACGATTGAAATTTAAGTAGATGACGACAC
AGCGTAGGAAAGAAAAACTCTCTATCAATTTACCTCTTTATGTTAGAAGC
GGTAGGGATGATGCATAGGAGAGCTGTTTTGCATAAGCCAAAACACCAGT
CACTTTACTTTTCCCGCTTTTTTTCTTTACATAGGCGAGAAATCAGGGGC
GTTCGGTCCTTCTGCTCCACCCTCTCCTTTCACCACCCTGGGGTTTGTTT
TGGTTGGCAGTCTGATACATTGGTTGTTGATGTTGTAAAGCATTCATCTC
CTTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042738XLOC_042738Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068529-exon-scaffold_485-1575043694:157085..157461TCONS_00068529-exon-scaffold_485-1575043694:157085..157461Clytia hemisphaericaexon
TCONS_00068529-exon-scaffold_485-1575043694:156650..156771TCONS_00068529-exon-scaffold_485-1575043694:156650..156771Clytia hemisphaericaexon
TCONS_00068529-exon-scaffold_485-1575043694:155544..155697TCONS_00068529-exon-scaffold_485-1575043694:155544..155697Clytia hemisphaericaexon
TCONS_00068529-exon-scaffold_485-1575043694:154888..155149TCONS_00068529-exon-scaffold_485-1575043694:154888..155149Clytia hemisphaericaexon
TCONS_00068529-exon-scaffold_485-1575043694:154054..154287TCONS_00068529-exon-scaffold_485-1575043694:154054..154287Clytia hemisphaericaexon
TCONS_00068529-exon-scaffold_485-1575043694:153556..153677TCONS_00068529-exon-scaffold_485-1575043694:153556..153677Clytia hemisphaericaexon
TCONS_00068529-exon-scaffold_485-1510915933:157085..157461TCONS_00068529-exon-scaffold_485-1510915933:157085..157461Clytia hemisphaericaexon
TCONS_00068529-exon-scaffold_485-1510915933:156650..156771TCONS_00068529-exon-scaffold_485-1510915933:156650..156771Clytia hemisphaericaexon
TCONS_00068529-exon-scaffold_485-1510915933:155544..155697TCONS_00068529-exon-scaffold_485-1510915933:155544..155697Clytia hemisphaericaexon
TCONS_00068529-exon-scaffold_485-1510915933:154888..155149TCONS_00068529-exon-scaffold_485-1510915933:154888..155149Clytia hemisphaericaexon
TCONS_00068529-exon-scaffold_485-1510915933:154054..154287TCONS_00068529-exon-scaffold_485-1510915933:154054..154287Clytia hemisphaericaexon
TCONS_00068529-exon-scaffold_485-1510915933:153556..153677TCONS_00068529-exon-scaffold_485-1510915933:153556..153677Clytia hemisphaericaexon
TCONS_00068529-exon-scaffold_485-1491911889:157085..157461TCONS_00068529-exon-scaffold_485-1491911889:157085..157461Clytia hemisphaericaexon
TCONS_00068529-exon-scaffold_485-1491911889:156650..156771TCONS_00068529-exon-scaffold_485-1491911889:156650..156771Clytia hemisphaericaexon
TCONS_00068529-exon-scaffold_485-1491911889:155544..155697TCONS_00068529-exon-scaffold_485-1491911889:155544..155697Clytia hemisphaericaexon
TCONS_00068529-exon-scaffold_485-1491911889:154888..155149TCONS_00068529-exon-scaffold_485-1491911889:154888..155149Clytia hemisphaericaexon
TCONS_00068529-exon-scaffold_485-1491911889:154054..154287TCONS_00068529-exon-scaffold_485-1491911889:154054..154287Clytia hemisphaericaexon
TCONS_00068529-exon-scaffold_485-1491911889:153556..153677TCONS_00068529-exon-scaffold_485-1491911889:153556..153677Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:153556..157461 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.203814	0.186438	0.160823	0.230509	0.0860467	0.099276	0	0	0.0412885	0	0	0	5.459	3.02947	0	0.024288	0	0	2.67377	3.38343	0	0	0	0	0.0895379	0.158963	0	0.0637711	0	0
Blast
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BLAST of TCONS_00068529 vs. Swiss-Prot (Human)
Match: MMP25 (Matrix metalloproteinase-25 OS=Homo sapiens GN=MMP25 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.338e-35
Identity = 95/238 (39.92%), Postives = 131/238 (55.04%), Query Frame = 3 
Query:  450 QLRLTHKLVDALKTFQRFAYLEPTGRLDNATREKMAAPRCGMPDVIPAEIKNRIKKRFAAQGSKWQNRVVTWQLEN-TNNDGLTVAQVREYMTRSLKKWSDAANIDFREIPPTPAGPQAPASQIRVQFGQGNHGDQFPFDGPSGTLAHAFFPLSNVGLSGDIHFDDAERYTILDPPRSSGLIKFYWVAVXXXXXXXXXXXXXXFGAIMYPFYTHFPG--LEFNLTQDDILGIQSIYGE 1154
            QL+   KL DA+K  QRFA L  TGR+D  T   M  PRC +PDV+      R ++R+A  GS W+ R +TW++ +   +  L+   VR  M+ +L  W   + + F E+      PQ     I + F +  H D +PFDG  GTLAHAFFP  +  +SGD HFDD E +T     +       + VAVHE GH+LGL HS    +IM PFY    G   ++ L+QDD  G+Q +YG+
Sbjct:   51 QLQSPEKLRDAIKVMQRFAGLPETGRMDPGTVATMRKPRCSLPDVLGVAGLVRRRRRYALSGSVWKKRTLTWRVRSFPQSSQLSQETVRVLMSYALMAWGMESGLTFHEV----DSPQGQEPDILIDFARAFHQDSYPFDGLGGTLAHAFFPGEHP-ISGDTHFDDEETWTFGS--KDGEGTDLFAVAVHEFGHALGLGHSSAPNSIMRPFYQGPVGDPDKYRLSQDDRDGLQQLYGK 281
The following BLAST results are available for this feature:
BLAST of TCONS_00068529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MMP251.338e-3539.92Matrix metalloproteinase-25 OS=Homo sapiens GN=MMP... [more]
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