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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068503 ID=TCONS_00068503|Name=TCONS_00068503|organism=Clytia hemisphaerica|type=transcript|length=601bp
AAAGTGCATAACAtgtacattttattcaaaaacaaaacagacagACAGTT
GTTATAGAAAAGTGCATTTCACTTTAAAGACAATGAATAACATTTTACTA
AGCATTTTCATTCTGGTGGTCATTTTAACAGCTATGGTACCATCTTGCGA
AAGCAGGAACATTGGTTGTATCGGAATTCGTTACCGGCAAAGACATTGCA
GGAGGAGCCGTCAAAAGCCTGCCAAGGTTCATTTCAACGGTCGCCGAATC
AAAACCAAGCAAAACCGAAAAACACGATCGCTGAGCAATCAggaaattga
tgacgtcatcaaacaaATTGAGGAGATTTCAATCATTCGATGAAGATGTC
AAAGTATTGAAATTGAATTCAAAATAGTAGAGTCGAAGTGATGACGAAAT
TATTCGCCCAACAAACTTCACAGCGTTTTGGTTGAGTACAACGACATCGA
AGATTAAACGCAGTATTTAGGGTTAGGCTTTACACACGAGGGTGCCAAAA
AACCCTCCCCCTAAAAATGATATGACGTAACTTCTATCATCAAGTGTTAA
ATGAGTGGTTCAATCAGATGACCTAAGAAATTCAGCTATGCGTTCTGAAA
A Run BLAST on NCBI protein sequence of TCONS_00068503-protein >TCONS_00068503-protein ID=TCONS_00068503-protein|Name=TCONS_00068503-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
KCITCTFYSKTKQTDSCYRKVHFTLKTMNNILLSIFILVVILTAMVPSCE
SRNIGCIGIRYRQRHCRRSRQKPAKVHFNGRRIKTKQNRKTRSLSNQEID
DVIKQIEEISIIR Run BLAST on NCBI transcript from alignment at scaffold_485:437189..440476+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068503 ID=TCONS_00068503|Name=TCONS_00068503|organism=Clytia hemisphaerica|type=transcript|length=3288bp|location=Sequence derived from alignment at scaffold_485:437189..440476+ (Clytia hemisphaerica)
AAAGTGCATAACAtgtacattttattcaaaaacaaaacagacagACAGTT
GTTATAGAAAAGTGCATTTCACTTTAAAGACAATGAATAACATTTTACTA
AGCATTTTCATTCTGGTGGTCATTTTAACAGCTATGGTACCATCTTGCGA
AAGCAGGAACATTGGTTGTATCGGAATTCGTTACCGGCAAAGACATTGCA
GGAGGAGCCGTCAAAAGCCTGCCAAGGTAAATATCTTTCAGAAACTTTTC
TGTTTGCACACAAGCGCACTTAATCCCCCCTAAGGCCCCCATTATATGAT
GAGAGAAGTGAGGGGAAGTAAATGAGGTGTTACTGTTCAACTTGATGGGG
TCAAGTGGCTGTTGGTTTGTATTGCTCTAAGAATCAAATTTAGGGTTTGT
AAATTGTGACTTATGGATAATAAGGAGTTATTTTGTTCTAGCCAGGTTCT
AAAGCAAGCGCTATATACTTTGAGCAAAATCAACCGTCGACAGAAACATA
CACATACTAACAGAAGAATTGTATGATGAGGGAATTGTTTTGGTACATTA
CCACACACCACTTAACTTATTGCGGAAAATCGCTACAAATGTACTTTTGT
TATTATGAATGAAAATACGTTTGCAGAAGGGACGGCTTTTCTAGAGTGCT
CCAAACGCTTTTTagttgaaaaagattttattcGATAATGGTCGTGacag
tttttaaaatgtttaaatggccaaaaagttaaaagttttcTCATCTTCAG
GATGAATGCAGAACATTTCtgcaaaaataactttttgttttgatcatttt
gaacGTCAGTCCGAAAAAACCGTTTTATCGCTATACTAATATGTAATTTT
CGAAACAATAATTTTGCGAAATGTTTTTTGCGCGCGGAGGTGCAAATTCT
ATAAAATACAGTATCTATTTTTGGAGAGCTGAGGATTTTGCAATTCCGTC
AACAGAAATTAGAAATGTTGTAATGGCCGTTTAtgaaatattgacttttt
taCGATCAAAGATTTTCCATTGATATCAGTCATTGTTTATCCATCCCTAC
ATTTATTTGCTCATCTCATTTCCTTTGTGAAAAAAACTTGGTTCGAatga
acaaacaaaaaaatctacCCAGGAAATTGGGGGGTCTTTTTACAGAGGGA
TGAGTTGTCAACACTTTTAGGGGGATTTGTAAATGTTTTGTTTACCTTAA
CAAACTTAAGGACGAGCCGCTCTCTTTGTTTTCTTAAACACTCCAAATAA
ACAAGTAGATACAGTACAAGTAACACCGACTGTCATATTTTTCCCGGCCA
ATTTTTTGCTAAAGATTTTTCAAGAGAATTTCTAAAACTTTTTCACAATT
ATCAAGAAAAGTTATCTTTCAATCCATCATACAAAActaattctttttta
atgagcataactcagagtttcatgtgTCCACCGTATGCActcatttaaaa
aagaaaaattttgttttgttggatGGATTGAAAGATGACTTTTTTTGATA
ATTATATTACCCATCGAGCTTTGGTTAACCATCGAGCACTCTGACATCAT
CGATTCGTCTAACCTTGATAAAACTATTTCACAAaaacttaaagaaaaat
taaaattcatatGGTTGTTCTTTCGTAGTATAGGTTGATAAATTAAGAAG
TGTATGTATGTGTGCACGCCATCATTTTCGACCTTTAACGAGAGTATATA
TCGGAATGGAATAGACAGGGGTTTATATCTCGCTAAAGACAAAACTTAAC
TTTTTTGCCTGGCAATCTGCAATATAAAGTCAACATTGAATcattaattt
tatcaaaagcaTTATAATCTAACGAAAATATTCAGAGACTTTGATATTAG
TTCAGCGTTGATAAATTAAGATATGTATGTATGTGTGCACGCCATCATTT
TCGACCTCTAATGAGATTATATATCGGAATGGGATAGACAGGGGTTTCTG
AAAAAATATCTCGCTAAAGACAAAACTTAACTTTTTTGCCGGACAATGTA
CAATACATAGAGAATcattaattttatcaaaagcaTTATAATCTAACGAA
AATATTCAGAGACTTTGATATTAGTTCAACGATGAGAGCTTTCAACAAAG
TTATAATAATTCATGAACGTAAATTTCACAAAGTTTGTACTAATGCGAAT
CATGAAAGTAAATTTCATGAAGTTTGTACTAATGCGACAGAGATATGCCG
CGTGTCAACACTTTCACAATTCCTGACGTTAAAACTTAAAGAAATCTATA
TTTTTGTTTACCCTGTTACTGTTTTGGATCCTTTatatatgaataaataa
aaacaaacattttcataaCCAAGGCATTTGAATAAAACAATGTCTTCATG
AATTAAAGCGATATTTACCGTTAACTGTCGAAGTTTTTATAACGACCACA
AGAACGGCCAAAAGGAatcgttttttaaaaaaaattattttttcgaaata
tttcataaattcTATGCAACTTCAGAACTACAAAAAATAACACGTGGGGA
AGGGATCGACAGTTCGCAGCTTCTTTGCTTGGGGTCTTTAAATTACTTTA
GTGGGGGATAATTCAAAGGTCACTTGAGGTCACACCCTGATATAATCCAA
GTtacccaaatatattttttccacAATATTCAAGTCTTTGACGTATAAGC
AACGAAACTTCTTTTTGCGGTGTGCGAAAGTAAAGGCTCTAATCCCAAGA
AGTACTTTCCATACAAATCTTTTGAAGACTTTGAACAGATAATACTTTAA
AAATCTCTCCGGATTACTAAGTTATCCCTTGACAACTTATTTTTATCTCC
TTGAAGAGGGTGCTACTTGAGTGAGAGATCACAGACTGATTTAACTAACA
AATCATTACGCAACATTCCatggtctgtattttcaaaaagttttccattt
tttgtGTTCTCAGGTTCATTTCAACGGTCGCCGAATCAAAACCAAGCAAA
ACCGAAAAACACGATCGCTGAGCAATCAggaaattgatgacgtcatcaaa
caaATTGAGGAGATTTCAATCATTCGATGAAGATGTCAAAGTATTGAAAT
TGAATTCAAAATAGTAGAGTCGAAGTGATGACGAAATTATTCGCCCAACA
AACTTCACAGCGTTTTGGTTGAGTACAACGACATCGAAGATTAAACGCAG
TATTTAGGGTTAGGCTTTACACACGAGGGTGCCAAAAAACCCTCCCCCTA
AAAATGATATGACGTAACTTCTATCATCAAGTGTTAAATGAGTGGTTCAA
TCAGATGACCTAAGAAATTCAGCTATGCGTTCTGAAAA Coding sequence (CDS) from alignment at scaffold_485:437189..440476+ >TCONS_00068503 ID=TCONS_00068503|Name=TCONS_00068503|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_485:437189..440476+ (Clytia hemisphaerica)
AAGTGCATAACAtgtacattttattcaaaaacaaaacagacagACAGTTG
TTATAGAAAAGTGCATTTCACTTTAAAGACAATGAATAACATTTTACTAA
GCATTTTCATTCTGGTGGTCATTTTAACAGCTATGGTACCATCTTGCGAA
AGCAGGAACATTGGTTGTATCGGAATTCGTTACCGGCAAAGACATTGCAG
GAGGAGCCGTCAAAAGCCTGCCAAGGTTCATTTCAACGGTCGCCGAATCA
AAACCAAGCAAAACCGAAAAACACGATCGCTGAGCAATCAggaaattgat
gacgtcatcaaacaaATTGAGGAGATTTCAATCATTCGATGAAAGTGCAT
AACAtgtacattttattcaaaaacaaaacagacagACAGTTGTTATAGAA
AAGTGCATTTCACTTTAAAGACAATGAATAACATTTTACTAAGCATTTTC
ATTCTGGTGGTCATTTTAACAGCTATGGTACCATCTTGCGAAAGCAGGAA
CATTGGTTGTATCGGAATTCGTTACCGGCAAAGACATTGCAGGAGGAGCC
GTCAAAAGCCTGCCAAGGTTCATTTCAACGGTCGCCGAATCAAAACCAAG
CAAAACCGAAAAACACGATCGCTGAGCAATCAggaaattgatgacgtcat
caaacaaATTGAGGAGATTTCAATCATTCGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068503-exon-scaffold_485-1491911889:437189..437414 | TCONS_00068503-exon-scaffold_485-1491911889:437189..437414 | Clytia hemisphaerica | exon |
| TCONS_00068503-exon-scaffold_485-1510915933:437189..437414 | TCONS_00068503-exon-scaffold_485-1510915933:437189..437414 | Clytia hemisphaerica | exon |
| TCONS_00068503-exon-scaffold_485-1575043694:437189..437414 | TCONS_00068503-exon-scaffold_485-1575043694:437189..437414 | Clytia hemisphaerica | exon |
| TCONS_00068503-exon-scaffold_485-1491911889:440102..440476 | TCONS_00068503-exon-scaffold_485-1491911889:440102..440476 | Clytia hemisphaerica | exon |
| TCONS_00068503-exon-scaffold_485-1510915933:440102..440476 | TCONS_00068503-exon-scaffold_485-1510915933:440102..440476 | Clytia hemisphaerica | exon |
| TCONS_00068503-exon-scaffold_485-1575043694:440102..440476 | TCONS_00068503-exon-scaffold_485-1575043694:440102..440476 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:437189..440476 + |
Blast
The following BLAST results are available for this feature:
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