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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068496 ID=TCONS_00068496|Name=TCONS_00068496|organism=Clytia hemisphaerica|type=transcript|length=587bp
caAGCGTTCAGTCGAAAATTAACTTGATGCTCACACATCAAATCTAGTAA
AGTTTCCGAAAGTTTCCGTCCAGAAAATGAGGCTGATGTTGGTCGTCGTT
CTATTCGTGGGAATGTTTTTCCAATCAAGTCAAGCAGCTCCTTTGCTGCC
TATTCCCCCAGAGACAGTTGGAGTTCTGGTTGAAAAGGGAATAGCTACAT
ACAAAGAGTTAATCGTCAATTTGCAAAGTGGTGTCAAGAATTTGATGATT
GTCGAAGAATTGACTAATGTTGCTAAATATGTAACCAACTTAAATGTTGA
GTTGGGAAAACAGCAAAAAGAAGCATTGAAAGTCATCCTTGAAGTTCATC
AAGAATCGGAAAAAGCATTGGATTCAGCCAAGCTGGTTGTGGACAAATTG
AAGAACCTTTGTGATGACATGATCTTCATATTGGAGGACGGTAGCACTGA
TGAGGATATCAAATTTGCTATCAAAACCTTCGTGGAAGAgggcatgaaca
tataaacgactggacatctatcttttattgtctctttgaagcgagcttcg
ttgccgcctgtatttcaaaattggtatgaaaaatccg Run BLAST on NCBI protein sequence of TCONS_00068496-protein >TCONS_00068496-protein ID=TCONS_00068496-protein|Name=TCONS_00068496-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MRLMLVVVLFVGMFFQSSQAAPLLPIPPETVGVLVEKGIATYKELIVNLQ
SGVKNLMIVEELTNVAKYVTNLNVELGKQQKEALKVILEVHQESEKALDS
AKLVVDKLKNLCDDMIFILEDGSTDEDIKFAIKTFVEEGMNI Run BLAST on NCBI transcript from alignment at scaffold_485:302563..303921+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068496 ID=TCONS_00068496|Name=TCONS_00068496|organism=Clytia hemisphaerica|type=transcript|length=1359bp|location=Sequence derived from alignment at scaffold_485:302563..303921+ (Clytia hemisphaerica)
caAGCGTTCAGTCGAAAATTAACTTGATGCTCACACATCAAATCTAGTAA
AGTTTCCGAAAGTTTCCGTCCAGAAAATGAGGCTGATGTTGGTCGTCGTT
CTATTCGTGGGAATGTTTTTCCAATCAAGTCAAGCAGCGTaagtttcttt
tctttcaaacttccataaaattttgaggatttaaAACCAGTTCGCCAGTG
AATAAATCAGCGATTATACTCCATTTCTCAATATTTCGTTATTAGACTGT
GATCAGTTTTTGATTCTTGTAGCTATCTGGTGTAGacatcattgattgat
ggttCCTTCAACTCAACACTGACAAATCTAACGGATTCCATTCCTTACAG
TATATTGAAAAATAACCAGGAGGTACTAGGTTTGTGAGGTGGTGGGTATG
TCTAAGCCAAAAgtcaaaaatcgacccttagaaagactgttctcaaattt
ttgtaCAATCTCGCTCGTTTATTGTCcccatttttgaaaatcaagacCCT
TTACGAGaaagaaaatttagattttttgtgaattttgatttttttgtgaa
ttttgaacCCTTATAGAGACTCAATTTGCTTTTGAGAGACTTTCTCGGtt
gtgaaaaaggtacccttatggctcgtaCATACCTGGCCCCGATTTTACCT
AAGTGACCTCCCATCCCCTGGATCCCGAGACTACCATTTCTTCATATTAT
TCATCAAGTAGGTTTAAAAACGACGAAAAGACAATGCGACAACACAATAA
TGAGAAGAAAACCATAAACTTTAACTGAAAAATACCAGACTTTTATTATA
ACTTCAAATTGCTCCTCAAgaccaaataaaatatttcaaagataCTCTCA
AGTAGTTCTCCTCTGTAAAACAGTGTAAAACTatggttttgaatttttat
tttctcacAGTCCTTTGCTGCCTATTCCCCCAGAGACAGTTGGAGTTCTG
GTTGAAAAGGGAATAGCTACATACAAAGAGTTAATCGTCAATTTGCAAAG
TGGTGTCAAGAATTTGATGATTGTCGAAGAATTGACTAATGTTGCTAAAT
ATGTAACCAACTTAAATGTTGAGTTGGGAAAACAGCAAAAAGAAGCATTG
AAAGTCATCCTTGAAGTTCATCAAGAATCGGAAAAAGCATTGGATTCAGC
CAAGCTGGTTGTGGACAAATTGAAGAACCTTTGTGATGACATGATCTTCA
TATTGGAGGACGGTAGCACTGATGAGGATATCAAATTTGCTATCAAAACC
TTCGTGGAAGAgggcatgaacatataaacgactggacatctatcttttat
tgtctctttgaagcgagcttcgttgccgcctgtatttcaaaattggtatg
aaaaatccg Coding sequence (CDS) from alignment at scaffold_485:302563..303921+ >TCONS_00068496 ID=TCONS_00068496|Name=TCONS_00068496|organism=Clytia hemisphaerica|type=CDS|length=858bp|location=Sequence derived from alignment at scaffold_485:302563..303921+ (Clytia hemisphaerica)
ATGAGGCTGATGTTGGTCGTCGTTCTATTCGTGGGAATGTTTTTCCAATC
AAGTCAAGCAGCTCCTTTGCTGCCTATTCCCCCAGAGACAGTTGGAGTTC
TGGTTGAAAAGGGAATAGCTACATACAAAGAGTTAATCGTCAATTTGCAA
AGTGGTGTCAAGAATTTGATGATTGTCGAAGAATTGACTAATGTTGCTAA
ATATGTAACCAACTTAAATGTTGAGTTGGGAAAACAGCAAAAAGAAGCAT
TGAAAGTCATCCTTGAAGTTCATCAAGAATCGGAAAAAGCATTGGATTCA
GCCAAGCTGGTTGTGGACAAATTGAAGAACCTTTGTGATGACATGATCTT
CATATTGGAGGACGGTAGCACTGATGAGGATATCAAATTTGCTATCAAAA
CCTTCGTGGAAGAgggcatgaacatataaATGAGGCTGATGTTGGTCGTC
GTTCTATTCGTGGGAATGTTTTTCCAATCAAGTCAAGCAGCTCCTTTGCT
GCCTATTCCCCCAGAGACAGTTGGAGTTCTGGTTGAAAAGGGAATAGCTA
CATACAAAGAGTTAATCGTCAATTTGCAAAGTGGTGTCAAGAATTTGATG
ATTGTCGAAGAATTGACTAATGTTGCTAAATATGTAACCAACTTAAATGT
TGAGTTGGGAAAACAGCAAAAAGAAGCATTGAAAGTCATCCTTGAAGTTC
ATCAAGAATCGGAAAAAGCATTGGATTCAGCCAAGCTGGTTGTGGACAAA
TTGAAGAACCTTTGTGATGACATGATCTTCATATTGGAGGACGGTAGCAC
TGATGAGGATATCAAATTTGCTATCAAAACCTTCGTGGAAGAgggcatga
acatataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068496-exon-scaffold_485-1491911889:302563..302700 | TCONS_00068496-exon-scaffold_485-1491911889:302563..302700 | Clytia hemisphaerica | exon |
| TCONS_00068496-exon-scaffold_485-1510915933:302563..302700 | TCONS_00068496-exon-scaffold_485-1510915933:302563..302700 | Clytia hemisphaerica | exon |
| TCONS_00068496-exon-scaffold_485-1575043694:302563..302700 | TCONS_00068496-exon-scaffold_485-1575043694:302563..302700 | Clytia hemisphaerica | exon |
| TCONS_00068496-exon-scaffold_485-1491911889:303473..303921 | TCONS_00068496-exon-scaffold_485-1491911889:303473..303921 | Clytia hemisphaerica | exon |
| TCONS_00068496-exon-scaffold_485-1510915933:303473..303921 | TCONS_00068496-exon-scaffold_485-1510915933:303473..303921 | Clytia hemisphaerica | exon |
| TCONS_00068496-exon-scaffold_485-1575043694:303473..303921 | TCONS_00068496-exon-scaffold_485-1575043694:303473..303921 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:302563..303921 + |
Blast
The following BLAST results are available for this feature:
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