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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068492 ID=TCONS_00068492|Name=TCONS_00068492|organism=Clytia hemisphaerica|type=transcript|length=4621bpRun BLAST on NCBI protein sequence of TCONS_00068492-protein >TCONS_00068492-protein ID=TCONS_00068492-protein|Name=TCONS_00068492-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1056bp MRSHLKELRRQSLPPTFFSKTNLKHPHLGLNNNSRRRCPSPDMSKEGDENRun BLAST on NCBI transcript from alignment at scaffold_485:246861..267979+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068492 ID=TCONS_00068492|Name=TCONS_00068492|organism=Clytia hemisphaerica|type=transcript|length=21119bp|location=Sequence derived from alignment at scaffold_485:246861..267979+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_485:246861..267979+ >TCONS_00068492 ID=TCONS_00068492|Name=TCONS_00068492|organism=Clytia hemisphaerica|type=CDS|length=60249bp|location=Sequence derived from alignment at scaffold_485:246861..267979+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068492 vs. Swiss-Prot (Human)
Match: PKN2 (Serine/threonine-protein kinase N2 OS=Homo sapiens GN=PKN2 PE=1 SV=1) HSP 1 Score: 555.829 bits (1431), Expect = 2.628e-175 Identity = 253/333 (75.98%), Postives = 296/333 (88.89%), Query Frame = 1
Query: 2572 MSVDQFRHISVLGRGHFGKVLLAEYKTTKELFAIKALKKGDIIFRDEVESLMSEKRIFEAANCVRHPFLVNLFACFQTKDHVCFVMEYAPGGDLMMHIHEEVFSEPRTMFYSGCVILGLQYLHDHEIVYRDLKLDNLLLDAEGYVKIADFGLCKEGMGFGQKTGTFCGTPEFLAPEVLTETSYTRSVDWWGLGVLIFEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLSNDSIALMRRLLRKNPDRRLGSSQRDAEDIKKQPFYKDMKWDSLLHRKLKAPFVPTVKHAEDVSNFDVEFTSEEPVLTPPRERKTLSTADQHMFSGFDYVANWC 3570
++ FR +VLGRGHFGKVLLAEYK T E+FAIKALKKGDI+ RDEV+SLM EKRIFE N VRHPFLVNLFACFQTK+HVCFVMEYA GGDLMMHIH +VFSEPR +FY+ CV+LGLQYLH+H+IVYRDLKLDNLLLD EG+VKIADFGLCKEGMG+G +T TFCGTPEFLAPEVLTETSYTR+VDWWGLGVLI+EMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLS ++I++MRRLLR+NP+RRLG+S++DAED+KK PF++ + W +L+ +K+K PF+PT++ EDVSNFD EFTSE P+LTPPRE + LS +Q MF FDY+A+WC
Sbjct: 652 FNLQDFRCCAVLGRGHFGKVLLAEYKNTNEMFAIKALKKGDIVARDEVDSLMCEKRIFETVNSVRHPFLVNLFACFQTKEHVCFVMEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLHEHKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGYGDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLSTEAISIMRRLLRRNPERRLGASEKDAEDVKKHPFFRLIDWSALMDKKVKPPFIPTIRGREDVSNFDDEFTSEAPILTPPREPRILSEEEQEMFRDFDYIADWC 984 HSP 2 Score: 393.275 bits (1009), Expect = 3.901e-116 Identity = 235/510 (46.08%), Postives = 318/510 (62.35%), Query Frame = 1
Query: 559 VDTLRDTIKLEIRRELKIKEGAENLRKVSTDKRTLAQCQQAIKASSQKLDELHDHLQDLNAHISEEIVMASGAGDPGKEILSPQKSMIAYKEDITDHYGNNRMASLEKQLAIEMKVKQGAENMLQMLQGKDSKSKKMIAEAEQMLADSKVKIDAIKMSILREQQSEKNTPETPNNRASLHEKSLEHRVDDIRHHIDIETRVAEGARNMLKHFLINS----DKKGINEAEKTLVEATNKLDLLHMSLERRIAEI--NPAAAQVGIYNEKLL---PSPKSRQRL-----------KAAAVTGKLEVKVLGAEHLLESVPNRDPRKSNTIVA-SPDNK-----FRLSKRMSTSTYNSKTTDDSCLSDICAVLKLDNVDVGHSKWKSKEAHCWNETFNISLDKARELEIGVYYRDYRSLCGITFLKLVDFLDNQRHELKLSLEPVGTLRCEVTFFNPLVNRRPRLQRQKQLFPKAKGKHFLRAGDMNTNIATWARLLKRAAPPSSQS--FSPNA 2004
+D ++D IK EIR+ELKIKEGAENLRKV+TDK++LA +K S++KL+ELH LQ+LNAHI DP ++I ++ D NNR+ +L+KQL IE+KVKQGAENM+QM SK +K+ A+Q+L DSK KI+ I+M IL+ Q T E + A LE R++++RHH IE VAEGA+N++K L+ S D+K ++EA+ E++ KLDLL SLE+R+ E+ N +++ I L+ P+ RQ + K AA+TG LEV+++G + +LE+VP R S + SP R SK S S+ N TDD +D+CAVLKLDN VG + WK W++ F + LD++RELEI VY+RD+RSLC + FL+L DFLDNQRH + L LEP GTL EVTFFNP++ RRP+LQRQK++F K +GK FLRA MN NIATW RL++RA P + S FSP A
Sbjct: 45 LDDIKDRIKREIRKELKIKEGAENLRKVTTDKKSLAYVDNILKKSNKKLEELHHKLQELNAHIV--------VSDP-EDITDCPRTPDTPNNDPRCSTSNNRLKALQKQLDIELKVKQGAENMIQMYSNGSSKDRKLHGTAQQLLQDSKTKIEVIRMQILQAVQ----TNELAFDNAKPVISPLELRMEELRHHFRIEFAVAEGAKNVMK--LLGSGKVTDRKALSEAQARFNESSQKLDLLKYSLEQRLNEVPKNHPKSRIIIEELSLVAASPTLSPRQSMISTQNQYSTLSKPAALTGTLEVRLMGCQDILENVPGRSKATSVALPGWSPSETRSSFMSRTSKSKSGSSRNLLKTDDLS-NDVCAVLKLDNTVVGQTSWKPISNQSWDQKFTLELDRSRELEISVYWRDWRSLCAVKFLRLEDFLDNQRHGMCLYLEPQGTLFAEVTFFNPVIERRPKLQRQKKIFSKQQGKTFLRAPQMNINIATWGRLVRRAIPTVNHSGTFSPQA 538 The following BLAST results are available for this feature:
BLAST of TCONS_00068492 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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