TCONS_00068484 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068484
Unique NameTCONS_00068484
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length764

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068484 ID=TCONS_00068484|Name=TCONS_00068484|organism=Clytia hemisphaerica|type=transcript|length=764bp
CAATCACACAACACACGTGCTTTACACGTGGTGAGAAAACtcgaaatcaa
aacattaaatttaCTGACTTAATAcaatatgaaaattttcaaaatatttc
atacTTTACACTTATAATTTTACAAGTTTTtgattcaaaaactttaaaac
ttaTTAATATGGTCTTAAGTTGAGATTTTGAATAAAACCATTAATTATTT
TGGGAGGATTTAAAAAGAATTCAATGGTCCTGAAAATACATCGTCGATTG
GTATTATTTTAGCCTTTCAAATAGGACGGAGCCGAAGCGTGGAACCTTTT
CATTTCGAGCAGTGGTTGCCCCATAACCGAAGCTACCTGGCTGTATCTTT
TAGAACAAATTATTAtgGGTTTCGTGAAGGTCATCAAAAACAGAGCTTac
tttaagcgatttcaagttAAATTCAAGAGGCGAAGAGAGGGTAGAACCGA
TTACTATGCCCGTAAACGCTTGACAACACAAGACAAAAACAAATACAACA
CTCCCAAATATCGTCTTATTGTACGTTTCACAAACAAGGATATCGTATGC
CAGATAGCCTACGCCAAAATCGAAGGAGACGTGATTGTATGTGCTGCATA
CGCTCATGAACTCCCTAGATATGGTGTTAAGGTCGGGTTAACTAATTATG
CTGCCGCTTACTGTACTGGTTTGTTGGTGGCTCGCAGATTGTTACAAAAG
TACAACTTGGGAGATAAATATGAAGGACAAACTGAAGTCGATGGAGAACA
CTTCACTATTGANN
Run BLAST on NCBI

protein sequence of TCONS_00068484-protein

>TCONS_00068484-protein ID=TCONS_00068484-protein|Name=TCONS_00068484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MGFVKVIKNRAYFKRFQVKFKRRREGRTDYYARKRLTTQDKNKYNTPKYR
LIVRFTNKDIVCQIAYAKIEGDVIVCAAYAHELPRYGVKVGLTNYAAAYC
TGLLVARRLLQKYNLGDKYEGQTEVDGEHFTIX
Run BLAST on NCBI

transcript from alignment at scaffold_485:174842..175749+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068484 ID=TCONS_00068484|Name=TCONS_00068484|organism=Clytia hemisphaerica|type=transcript|length=908bp|location=Sequence derived from alignment at scaffold_485:174842..175749+ (Clytia hemisphaerica)
CAATCACACAACACACGTGCTTTACACGTGGTGAGAAAACtcgaaatcaa
aacattaaatttaCTGACTTAATAcaatatgaaaattttcaaaatatttc
atacTTTACACTTATAATTTTACAAGTTTTtgattcaaaaactttaaaac
ttaTTAATATGGTCTTAAGTTGAGATTTTGAATAAAACCATTAATTATTT
TGGGAGGATTTAAAAAGAATTCAATGGTCCTGAAAATACATCGTCGATTG
GTATTATTTTAGCCTTTCAAATAGGACGGAGCCGAAGCGTGGAACCTTTT
CATTTCGAGCAGTGGTTGCCCCATAACCGAAGCTACCTGGCTGTATCTTT
TAGAACAAATTATTAtggtaaataaaagttttaccCAAATTATGTTCACT
AGAAGACGATTAAGAGAGTGGTGTTTCATTTTTCACGCATTATAAGCTAA
TTGATTTTCTGATCGTGTCGATTTTTGCAGATTAGTAAGGCCTTTTTTAT
TCCATTTGTAGGGTTTCGTGAAGGTCATCAAAAACAGAGCTTactttaag
cgatttcaagttAAATTCAAGAGGCGAAGAGAGGGTAGAACCGATTACTA
TGCCCGTAAACGCTTGACAACACAAGACAAAAACAAATACAACACTCCCA
AATATCGTCTTATTGTACGTTTCACAAACAAGGATATCGTATGCCAGATA
GCCTACGCCAAAATCGAAGGAGACGTGATTGTATGTGCTGCATACGCTCA
TGAACTCCCTAGATATGGTGTTAAGGTCGGGTTAACTAATTATGCTGCCG
CTTACTGTACTGGTTTGTTGGTGGCTCGCAGATTGTTACAAAAGTACAAC
TTGGGAGATAAATATGAAGGACAAACTGAAGTCGATGGAGAACACTTCAC
TATTGANN

Coding sequence (CDS) from alignment at scaffold_485:174842..175749+

>TCONS_00068484 ID=TCONS_00068484|Name=TCONS_00068484|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_485:174842..175749+ (Clytia hemisphaerica)
AtgGGTTTCGTGAAGGTCATCAAAAACAGAGCTTactttaagcgatttca
agttAAATTCAAGAGGCGAAGAGAGGGTAGAACCGATTACTATGCCCGTA
AACGCTTGACAACACAAGACAAAAACAAATACAACACTCCCAAATATCGT
CTTATTGTACGTTTCACAAACAAGGATATCGTATGCCAGATAGCCTACGC
CAAAATCGAAGGAGACGTGATTGTATGTGCTGCATACGCTCATGAACTCC
CTAGATATGGTGTTAAGGTCGGGTTAACTAATTATGCTGCCGCTTACTGT
ACTGGTTTGTTGGTGGCTCGCAGATTGTTACAAAAGTACAACTTGGGAGA
TAAATATGAAGGACAAACTGAAGTCGATGGAGAACACTTCACTATTGANA
tgGGTTTCGTGAAGGTCATCAAAAACAGAGCTTactttaagcgatttcaa
gttAAATTCAAGAGGCGAAGAGAGGGTAGAACCGATTACTATGCCCGTAA
ACGCTTGACAACACAAGACAAAAACAAATACAACACTCCCAAATATCGTC
TTATTGTACGTTTCACAAACAAGGATATCGTATGCCAGATAGCCTACGCC
AAAATCGAAGGAGACGTGATTGTATGTGCTGCATACGCTCATGAACTCCC
TAGATATGGTGTTAAGGTCGGGTTAACTAATTATGCTGCCGCTTACTGTA
CTGGTTTGTTGGTGGCTCGCAGATTGTTACAAAAGTACAACTTGGGAGAT
AAATATGAAGGACAAACTGAAGTCGATGGAGAACACTTCACTATTGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042715XLOC_042715Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068484-proteinTCONS_00068484-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068484-exon-scaffold_485-1491911889:174842..175208TCONS_00068484-exon-scaffold_485-1491911889:174842..175208Clytia hemisphaericaexon
TCONS_00068484-exon-scaffold_485-1510915933:174842..175208TCONS_00068484-exon-scaffold_485-1510915933:174842..175208Clytia hemisphaericaexon
TCONS_00068484-exon-scaffold_485-1575043694:174842..175208TCONS_00068484-exon-scaffold_485-1575043694:174842..175208Clytia hemisphaericaexon
TCONS_00068484-exon-scaffold_485-1491911889:175353..175749TCONS_00068484-exon-scaffold_485-1491911889:175353..175749Clytia hemisphaericaexon
TCONS_00068484-exon-scaffold_485-1510915933:175353..175749TCONS_00068484-exon-scaffold_485-1510915933:175353..175749Clytia hemisphaericaexon
TCONS_00068484-exon-scaffold_485-1575043694:175353..175749TCONS_00068484-exon-scaffold_485-1575043694:175353..175749Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:174842..175749 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
945.945	960.72	862.02	894.265	601.538	547.823	643.338	722.696	449.47	464.596	569.012	658.476	908.221	993.794	1012.83	993.351	1031.87	1226.1	437.75	473.86	1805.58	1857.89	1368.84	1372.08	1137.44	1230.38	1746.47	1715.99	1263.34	1321.77
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005485Rbsml_L5_euk/L18_arc
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:00080975S rRNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0008097 5S rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00068484 vs. Swiss-Prot (Human)
Match: RL5 (60S ribosomal protein L5 OS=Homo sapiens GN=RPL5 PE=1 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 1.150e-54
Identity = 102/132 (77.27%), Postives = 120/132 (90.91%), Query Frame = 2 
Query:  365 MGFVKVIKNRAYXXXXXXXXXXXXEGRTDYYARKRLTTQDKNKYNTPKYRLIVRFTNKDIVCQIAYAKIEGDVIVCAAYAHELPRYGVKVGLTNYAAAYCTGLLVARRLLQKYNLGDKYEGQTEVDGEHFTI 760
            MGFVKV+KN+AYFKR+QVKF+RRREG+TDYYARKRL  QDKNKYNTPKYR+IVR TN+DI+CQIAYA+IEGD+IVCAAYAHELP+YGVKVGLTNYAAAYCTGLL+ARRLL ++ +   YEGQ EV G+ + +
Sbjct:    1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNV 132
The following BLAST results are available for this feature:
BLAST of TCONS_00068484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL51.150e-5477.2760S ribosomal protein L5 OS=Homo sapiens GN=RPL5 P... [more]
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