TCONS_00068484-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068484-protein
Unique NameTCONS_00068484-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length133

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068484-protein ID=TCONS_00068484-protein|Name=TCONS_00068484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MGFVKVIKNRAYFKRFQVKFKRRREGRTDYYARKRLTTQDKNKYNTPKYR
LIVRFTNKDIVCQIAYAKIEGDVIVCAAYAHELPRYGVKVGLTNYAAAYC
TGLLVARRLLQKYNLGDKYEGQTEVDGEHFTIX
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042715XLOC_042715Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068484TCONS_00068484Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005485Rbsml_L5_euk/L18_arc
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:00080975S rRNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0008097 5S rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005485Ribosomal protein L5 eukaryotic/L18 archaealPRINTSPR00058RIBOSOMALL5coord: 84..104
score: 88.1
coord: 43..62
score: 78.75
coord: 20..39
score: 77.81
IPR005485Ribosomal protein L5 eukaryotic/L18 archaealPFAMPF17144Ribosomal_L5ecoord: 14..131
e-value: 4.9E-64
score: 215.1
NoneNo IPR availableGENE3D3.30.420.100coord: 10..127
e-value: 4.2E-43
score: 147.2
NoneNo IPR availableCDDcd00432Ribosomal_L18_L5ecoord: 31..112
e-value: 3.28073E-23
score: 87.2103
NoneNo IPR availableSUPERFAMILY53137Translational machinery componentscoord: 11..112

Blast
[Close]
BLAST of TCONS_00068484-protein vs. Swiss-Prot (Human)
Match: RL5 (60S ribosomal protein L5 OS=Homo sapiens GN=RPL5 PE=1 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 3.262e-68
Identity = 102/132 (77.27%), Postives = 120/132 (90.91%), Query Frame = 0 
Query:    1 MGFVKVIKNRAYFKRFQVKFKRRREGRTDYYARKRLTTQDKNKYNTPKYRLIVRFTNKDIVCQIAYAKIEGDVIVCAAYAHELPRYGVKVGLTNYAAAYCTGLLVARRLLQKYNLGDKYEGQTEVDGEHFTI 132
            MGFVKV+KN+AYFKR+QVKF+RRREG+TDYYARKRL  QDKNKYNTPKYR+IVR TN+DI+CQIAYA+IEGD+IVCAAYAHELP+YGVKVGLTNYAAAYCTGLL+ARRLL ++ +   YEGQ EV G+ + +
Sbjct:    1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNV 132
The following BLAST results are available for this feature:
BLAST of TCONS_00068484-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL53.262e-6877.2760S ribosomal protein L5 OS=Homo sapiens GN=RPL5 P... [more]
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