TCONS_00068478 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00068478
Unique Name	TCONS_00068478
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1378

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_485:117312..128976+

transcript sequence

>TCONS_00068478 ID=TCONS_00068478|Name=TCONS_00068478|organism=Clytia hemisphaerica|type=transcript|length=1378bp
ATTGGAATTTGCCAGAGCCTGTTTCCATATTCTTTGGACGAGAAAATTTG
ATTGAATCTATTCACTTGAAACTTCAACAAAATCAAGCAATTGCTTTGAG
TGAAATGGGAGGTGTGGGGAAAACACAAACTGCTGCAAAGTTCGTTCAAA
CGCACAAGGATGAATATCAGAAGATATTTTGGATTTCTGCTGTCAGCCTC
AAGAAATCTTTGAACGAGATTTTGTGTGCATTTGGTTGTAAACAACTAAT
TCCTGATGAACCTTCAATGGAAACTCTTGCTTTCATTTTTCTCTCTAAGA
TTTGTGAAGGCTCCAAAAGATCGCTGGTTGTATTGGATGACGTCACTGAT
GTTACAAAAGATATCACTTTATTCATTCGaaatgtgaaagaaaaaatcaa
cttaTTGTTGACATCTCAATTGAGGGATTGGGAAGATTATGGTTTGATTC
AAATTGCGGTTCCATGTTTCCAAGAACAAGAATCCATTGGCTTCTTACAG
AATGAACTTTCTTCAGCCAGCCAACATTAAAtctttattttagcgaatcg
tTTACAATCATTACCTTTAGCCCTTCACCAAGCCATTTGTTACATCAAAA
AACATAAAGTTCCTCTACACAAATACATCGAACAATTTAAAGTTTGCAGA
GAAAGTGTTTTAGGAATGAAAATCAATTCGTTTACTGAATATGACAAGAC
ATTGTTGACAGTTTGGGATATGGCTTTTGCGAAGATTCGGGTCGAATCAA
AGAATGCTCTTTTGGTCTTAGGAATGATGGCTTTCATGGACaatcgaaaa
atcaataaaaagacattcagttattttgataaaatagatGAATTTGAATT
AAATGAAATCATCAATCTGCTTTGTCAATATTCATTGGTCAACGAGCGGA
ATGAATGTTTAGAAATTCACAGTCTTGTGCAAAAAGTTATCCGATATCGT
ATTGAACAGAAACAATTTGTTGAGGATGAAAGTCCGTTGACACTTCTtga
agatgttcttttaaaaatcgagGTTTCTGTTACAGATTTGGTTATAAATG
CTGACTGTGAGGATTTATGGCACATTCATATTTTTCGTTTGATCATGAGT
GGTGCAATCAAAACTGTCAACTTTCATGTTTCTCTGTTGCTGAATATCGC
CACAGGCAGAATGGAGTTGGAGAACTTATACCAAATTTCTGAacttcttt
caaaagttttcttaaaacaataTAGGTTGTTTCGAGATGTGGAAACTTTT
CACATGTTGTTGCTTGTTCATGATCGTTTCATAAACGCGTCAATTCAATT
AGGTTTACTTAATTTGAATGagatttttgcttttgaaaaagAGTTTTCCT
CAGAGCTGGAAGAAAATTCTGTAGATGT

Run BLAST on NCBI

transcript from alignment at scaffold_485:117312..128976+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00068478 ID=TCONS_00068478|Name=TCONS_00068478|organism=Clytia hemisphaerica|type=transcript|length=11665bp|location=Sequence derived from alignment at scaffold_485:117312..128976+ (Clytia hemisphaerica)
ATTGGAATTTGCCAGAGCCTGTTTCCATATTCTTTGGACGAGAAAATTTG
ATTGAATCTATTCACTTGAAACTTCAACAAAATCAAGCAATTGCTTTGAG
TGAAATGGGAGGTGTGGGGAAAACACAAACTGCTGCAAAGTTCGTTCAAA
CGCACAAGGATGAATATCAGAAGATATTTTGGATTTCTGCTGTCAGCCTC
AAGAAATCTTTGAACGAGATTTTGTGTGCATTTGGTTGTAAACAACTAAT
TCCTGATGAACCTTCAATGGAAACTCTTGCTTTCATTTTTCTCTCTAAGA
TTTGTGAAGGCTCCAAAAGATCGCTGGTTGTATTGGATGACGTCACTGAT
GTTACAAAAGATATCACTTTATTCATTCGaaatgtgaaagaaaaaatcaa
cttaTTGTTGACATCTCAATTGAGGGATTGGGAAGATTATGGTTTGATTC
AAATTGCGGTTCCATGTTTCCAAGAACAAGAATCCATTGGCTTCTTACAG
AATGAACTTTCTTCAGCCAGCCAACATTAAAtctttattttagcgaatcg
tTTACAATCATTACCTTTAGCCCTTCACCAAGCCATTTGTTACATCAAAA
AACATAAAGTTCCTCTACACAAATACATCGAACAATTTAAAGTTTGCAGA
GAAAGTGTTTTAGGAATGAAAATCAATTCGTTTACTGAATATGACAAGAC
ATTGTTGACAGTTTGGGATATGGCTTTTGCGAAGATTCGGGTCGAATCAA
AGAATGCTCTTTTGGTCTTAGGAATGATGGCTTTCATGGACaatcgaaaa
atcaataaaaagacattcagttattttgataaaatagatGAATTTGAATT
AAATGAAATCATCAATCTGCTTTGTCAATATTCATTGGTCAACGAGCGGA
ATGAATGTTTAGAAATTCACAGTCTTGTGCAAAAAGTTATCCGATATCGT
ATTGAACAGAAACAATTTGTTGAGGATGAAAGTCCGTTGACACTTCTtga
agatgttcttttaaaaatcgagGTTTCTGTTACAGATTTGGTTATAAATG
CTGACTGTGAGGATTTATGGCACATTCATATTTTTCGTTTGATCATGAGT
GGTGCAATCAAAACTGTCAACTTTCATGTTTCTCTGTTGCTGAATATCGC
CACAGGCAGAATGGAGTTGGAGAACTTATACCAAATTTCTGAacttcttt
caaaagttttcttaaaacaataTAGGTTGTTTCGAGATGTGGAAACTTTT
CACATGTTGTTGCTTGTTCATGATCGTTTCATAAACGCGTCAATTCAATT
AGGTTTACTTAATTTGAATGAGATTTTTGCTTTCGAAGAAGAGTTTTCCA
CAGAACTTGAAGAACATTCTGAAGAAGTTTACCGTTGGAAGCTACTACAA
GCTCAGGCATATAATAGACATGGAAGAGTGTCGTTATGCAATGATATTGT
TCGAAATTTATTCAATGAACTAGTCAAAAAGAAAGGATTTGACTATATTA
AATTAATATTGGCGAGTTTTTTCACGGTAAGGGATGTCGAAGTTTTGTTG
AATACCGTTGacacaatgccggacaaaaggttgtagacaaatgaaatttc
agtgaaaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNgaaccacaagcaaaaaatcagcgttttgatactggtgtaagcca
gttaatcaagcccttgtggtttgcccttgcggttagactgcagtgggtga
ctttcaaacagctttgaatggatttgaatgggtttggaaagcacccagag
cctcttgggaacttgtttttgatcgatattgaagtattttgcaaatattg
cagaagtctaccaaccttttgtccagcattgcaCAAATAATCTCAGTGAC
ACGGAACTTTTGGTTTATTATAATGCAAAATGTTCTTTATACATCATGAG
CGGTTGCTTTGATTTGGCTGAACAAGTCATGCAGGATTGGAAAGAACGCA
TACACAGAAAACAATTTCCTCGAATGTTGCActttaatttcacaaaaatg
aatTGCTTTTTACTTTACAAGAAAGGAAATTACAACGAAGCACTACTTGC
TTGCGATGAACTTAAACGAGACAGTGTCTTTACTGATGCTGATGTTTTCA
NTTTCTTTACAAGAAAGGAGATTACAACGAAGCACTACTAGTTTGCGATG
AACTTAAACGAGGCATTGTTTTTACTGATGCAGATGTTCTCGTTTGGGAA
GCCttgattttgatcaaattaGGAAAGTTCAACGAGGCAGAGGTGTTACT
TGATGACTTGAATCAACGCAATAATGCATTTATCATTAGAATCAGCTCAT
CCCTGAAATTTCGAAAGCACGACTTTGAAGCAGTAGTAAAGCTCCTCGCA
AATGTGGAAGATGAGCGTTTGTCGAATCTTTTGTTTTTGGTAAAGGGATA
TTTGAAACTGCATCGACAACTAGAAAATAATAAATCGAGAGGAANcaggg
tcacttttttcgcaaatttcgagtcccacgtagggtccatttttcggagc
ggagcacccccgtcggtcgacaagggtagtaccccccagGGGTACTTCCG
CCATTCAGTCaaatttttgtccaatttcTGTCACACCGTCAAGATCCAGA
CCGAAATTCTGCCACTGAAAATTCCCTTTGAActtaattatttttctaaa
attcctgaattttgactttttcttttggttccAACTTCCGAACGAATTTT
TTACGAGTTTAGTATGTACGAGAAGTTAGGAGGCTTCGTCACTCTACAAC
ACCCTTTTGAAGTGAAAGTGATCTTACTAAAAACTTTGACGTCGCTCAAA
ATAGCTGACACGTTGattttcattcttctttttttttatctagaaTTTTC
CACAGTGATGGATTTGAAATTGACGCTGAAAGCTGACAAatatgaaattg
atttttttcttgaaaattctagaattttgactttttggtgCAAATTCCGA
AATTCCAAGCGATTTTGTTTAACCTTTCCGGCacgctgttttttatattt
tcacgctGTCTGTGCGCAactatttttgagaaaacgcgGGGTTTGGGAAA
AGTgccataactcaagaactagaaatcttttggcaaaaagtaaactatcc
ctgaaaagctaattaAGTTTTGCAGCTTTTAGGTTGGGTACAAGTTCAAT
TAAAGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGAATCTTGTTAAC
TTTTTAACCTCTTGACACTGAATTCTGGTGTCATTGAATATcagtttttg
ttttactttagaTCTAGCCAAGTCAATGAATATGAAAGCTGATAAAGATG
AAATGGATggtatgttttgtttctttacTTGTTATATATTTTGGAGGAAA
TTGTAACCTCAAAAGCATATCTGATAATTAATATATAATAAAAAGTTGGA
GGCTACCCGGGTATCTACCTTAAAAAGCCTCTCTGAAGATTGTCTAATAA
AAAGTAGGAGGCATCGCCAAGTTGACGTTCTAAATAAAACTGatcctttt
gaaaaatattcatttcttCTTGTTATATATGTTACAGTTTTTAGACATCC
TCTGTATTATAAGAAGctttttgtaatatattttcacTATCTTTCTGTCT
GAATAGGCATTTTCCGATAAAAATCACTATTTGTCTTACTCCAGGTTTAG
CCAAGTCAATGGATAGTAGACTGATTACGAAGGCTGATAAAGATGAAATG
GATggtatgttttatttatttacttattttatAGTTTGGAGTAAATAGTA
TCCACTTTAAAAGCCTATCCGATGATTGtctaaaaaaattacgagacaTC
GCTAAGTTGACGTTCTAAATGAAATCGctccttataaaaaatattgaatt
tttctgtttgaataGACATTTCCCGATAAATATCACTATCTTATATTTAC
TATTTACTTTAGGTTTAGCCAAGTCAATGAATACGAAAGCTGATAAAGAT
GAAATTCatggtattttttgtttgtttaattctttttggacctacctccg
ggtgccccggtggaggttctataaattaacccatgtccgttcgtccgttc
gtccgttcgttcgtccgtctgttcgtccgtctgttaccagcttttctcag
gattggctcattagttttttctggttGTTTGCagaatgatgcaaaatggc
aatgcccagaacgtgacggagcccgatttttgagaaaaaatttatttggg
caaatttgggccaaaaactacctaaaaatagggttttttgaactttgtgc
aaaatcctgttattacttttttctgattttttgtacaaagatggagggca
agattctctaaagaatggctgaagtggtttttcccggaaaattcttattc
gcctgaaaaaacggattttcgtattttgggggaaattccctttaaccaaa
taagaaaatatagcttttaagaatgttgactcattatttttttctgattt
tttgcacaatgatgcaaaatggcaatgcctaaaatgagTTGGAGCCCGGt
tttcgaataaaaatatatttgggcaaatttgggccaaaaactgcctaaaa
atagggtttttggactttgtgcaaaatcctgtttttacttttttctgatt
ttttgtacaaagatggagggcaagattctctaaagaatgactgaagtggt
ttttcccgggaaattcttattcgccttaaaagaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNcgccttaaaagacggattttcgtattttggggaaattccctttaacc
aaataagaaaatacagcttttctcaatgttgactcataatctttttctga
tttttttgcacaatgatgcaaaatggcaatgcccaaaatgtgacggagcc
agatttaaaaaaaaaataaattattttgggcaaatttgggccaaaaacag
ctgaaaaggtttttttgggcctaagtgattttcgtatttggggaaattcc
tttttaccattttacaagCGAAATTGACGTTGAAGGCTGACATGTGCCAA
ATTGATGGTAAAGTTATACCAGATAAATTTGTTGTGTTTGTCGAATGTTT
TTTCCTCCTCTTTTGAGGTGGTCTGCTAGcaacttttttcatcaaaataa
aactttagcgttattcagatttcaaatgCTTCTAGTCGATGAAAAATGTG
TGTTCCGAGACCTTTACAAATTTCCTCTGTTGTCTACACGaagtttattt
ttattcttttaacgGAATATTGCTGAATAAGAAGGCCTTTTctgataaat
ataatttttggacctaccccggtggggtgtaggtcctataaattaacctg
ttttcgttcgttcgttcgtccgtccgttcgtccgttcgtctgttaccaac
ttttctcaggattgagtcataggaattttttgatttttggtaaaaaaggT
GCGAAAtggtgatggccaaaatgtgacggagcccgattttcaaaaaaaag
ttttggggcaaatttggaccATAAAACGGCTAAAgaacggtttttttgga
ctttgtgaaaaattggatcattaattttttcggattttttgcatgaaagt
agggtaccatcataggtaaaagatggctcaagcagatttttgcaaaNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNtgaagaatatgtgtgtttagacatgaaattttggctgcttgacgtgtt
tttatagaaaaactggccaaattcgatatctttttataagcacattatca
ataattacttaggtattagcttttcaagagattggctctttcattcttaa
tgattttttgcacaaagatgcataactataaaccctcgaatgtgacggag
cccgattttcgaaaaaagtgtttttgggcaaatttgagccaaaaaaaggc
taaaaaaacgggtttgattttttgcatgaaagtaggtaaaagatggttca
tttttgtgaaaaagtgaattttcagctcaaaaaacgcatctttatctata
agaatctttattaataagcatacatcaatgttattagccaaataactttt
tttgctcacgaagtcttgaacatgaaagaatatttcaagagcatataaga
aacaaacgattAATTTTAATAGATAGTCACTATTTCTTCTGAATAATTgc
ttaatggtcacgctcacgtagatatcaattatatatgtgttaaatgcata
accaggtaggtccataaaagtatcacttgttttttacAGAATTAAGCAAC
AAAGTTGATCAGCTATCAATGGAATCAAAATCTCTAAAGGGTAAAGCTTT
AGCTATGATTGCTATTTTCTCTATCCATGCTTAACCCTAATCGTACTAAG
GGGGGGGTTGCTTCTGTTTGGAGGTCAGATTAATGGTAATAGCTATATAT
AATAGATTTTAGACTCAgccaacttttttctaaagcctttgttagattGC
ATTAgctatttataaaaacaaaggaaattttcagcagaaagattttttgt
caaaagttgccttaTATGACAAGGTTCTTgtatgccaaatttcattcCAA
AAGAACCACTAAATCAAAAGTTAATGGGTGGTACAAGAAAacccccctag
ttttgaactGCCCCTAAATTTATTCAAAGAAACTTTATTTGTTATTTGTC
ACCTTTTTTGTATTCATTCTAGACACAACAAAGACACATTGGAATTTGCC
AGACCCTGTTTCCATCTTCTTTGGACgagaaaatttgattaaatcCATTC
ACTTGAAACTTCAACAAAATCAAGCAATTGCTTTGAGTGAAATGGGAGGT
GTGGGGAAAACACAAACTGCTGCAAAGTTCGTTCAAATACACAAGGATGA
ATATCAGAAGATATTTTGGATTTCTGCTGTCAGCCTCAAGAAATCTTTGA
ACGAGATTTTGTGTGCATTTGGCTGTAAACAACTAATACCTGATGAACCT
TCGATGGAAACTCTGACTTTCATTTTCCTCTCTAAGATTTGTGAAGGCTC
CAAAAAATCGCTGGTTTTATTGGATGACGTCACTGAGGTCACAAAAGACG
TCACTTCTTTCATTCGaaatgtgaaagaaaaaatcaacttaTTGTTGACA
TCCCAATTGAAAGATTGGGAAGATTATGGTTTGTTTCAAATTGCTGTTCC
ATGTTTCCATGAACAAGAATCCATTGGCTTCTTACAGAATGAACTTTCTT
CAGCCAACCAACATGAAATCTCCATTTTAGCGAATCGTTTACAATCATTA
CCTTTAGCCCTTCACCAAGCCATTTGTTACATCAAAAAACATAAAGTTCC
TCTACAAAAATACATCAAACAATTTGAAGCAtgcagaaaaagtgttttgg
gAATGAAAATTAATTCCTTTACTGAATATGACAAAACATTGTTGACAGTT
TGGGATATGGCTTTCGCGAAGATTCGGGTCGAATCAAAGAATGCTATTTT
GATCTTGGGAATGATGGCTTTCATGGACAAttgcaaaatcaacaaaaaga
cATTCAGTTATTTTGATAAAGTTAGCGAATTTGAATTAAATGAAATTATC
AATCTGCTTTGTCAATATTCATTGGTCAACGAGCGGAACGAATGTTTAGA
AATTCACAGTCTTGTGCAAAAAGTTATCCGATATCGTATTGAACAAAAAC
AATTTGTCGAGGATGAATGTCCGTTGACACTTCTTGAAGGTGTGCTTTTG
AAAATCGAGTCTTCTCTTGAAGATTTGGTTGCAAATGATGACTCCCAGGA
TTTATGGTACATTCATGTTTTTCGTTTGATCATGAGTGGTGCACTAAAAA
CTTTCAACTTTGATATTAACCTGGTGTTAAATATCGCCACAGGCAGAATG
GAGTTGGAAAACTTATACCTACTTGCTGAacttctttcaaaagttttgtt
aAAACAATATCGGTTGTTTCGAGATGTGAAAACTTTTTATACGTTGTTGC
TTGTTCATCATCGTTTCATAAACGCGTCAAGTCAATTAGGTTTACTTAAT
TTGAATGagatttttgcttttgaaaaagAGTTTTCCTCAGAGCTGGAAGA
AAATTCTGTAGATGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042709	XLOC_042709	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00068478-exon-scaffold_485-1491911889:117312..118613	TCONS_00068478-exon-scaffold_485-1491911889:117312..118613	Clytia hemisphaerica	exon
TCONS_00068478-exon-scaffold_485-1510915933:117312..118613	TCONS_00068478-exon-scaffold_485-1510915933:117312..118613	Clytia hemisphaerica	exon
TCONS_00068478-exon-scaffold_485-1575043694:117312..118613	TCONS_00068478-exon-scaffold_485-1575043694:117312..118613	Clytia hemisphaerica	exon
TCONS_00068478-exon-scaffold_485-1491911889:128901..128976	TCONS_00068478-exon-scaffold_485-1491911889:128901..128976	Clytia hemisphaerica	exon
TCONS_00068478-exon-scaffold_485-1510915933:128901..128976	TCONS_00068478-exon-scaffold_485-1510915933:128901..128976	Clytia hemisphaerica	exon
TCONS_00068478-exon-scaffold_485-1575043694:128901..128976	TCONS_00068478-exon-scaffold_485-1575043694:128901..128976	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_485	supercontig	scaffold_485:117312..128976 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.185706	0.00085434	0.0314664	0.313585	0	0.797546	0.516458	0.396319	0.381998	0	0	0.409003	0.140068	0	0.631316	0.343486	0.10854	0.225217	0.841488	0.232018	0.22084	0.687144	0.00948559	0.424452	0.479228	2.38139	1.95327	0.507686	0.113844

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00068478 vs. Swiss-Prot (Human)

BLAST of TCONS_00068478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00068478 (transcript) - C. hemisphaerica