TCONS_00068478 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068478
Unique NameTCONS_00068478
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068478 ID=TCONS_00068478|Name=TCONS_00068478|organism=Clytia hemisphaerica|type=transcript|length=1378bp
ATTGGAATTTGCCAGAGCCTGTTTCCATATTCTTTGGACGAGAAAATTTG
ATTGAATCTATTCACTTGAAACTTCAACAAAATCAAGCAATTGCTTTGAG
TGAAATGGGAGGTGTGGGGAAAACACAAACTGCTGCAAAGTTCGTTCAAA
CGCACAAGGATGAATATCAGAAGATATTTTGGATTTCTGCTGTCAGCCTC
AAGAAATCTTTGAACGAGATTTTGTGTGCATTTGGTTGTAAACAACTAAT
TCCTGATGAACCTTCAATGGAAACTCTTGCTTTCATTTTTCTCTCTAAGA
TTTGTGAAGGCTCCAAAAGATCGCTGGTTGTATTGGATGACGTCACTGAT
GTTACAAAAGATATCACTTTATTCATTCGaaatgtgaaagaaaaaatcaa
cttaTTGTTGACATCTCAATTGAGGGATTGGGAAGATTATGGTTTGATTC
AAATTGCGGTTCCATGTTTCCAAGAACAAGAATCCATTGGCTTCTTACAG
AATGAACTTTCTTCAGCCAGCCAACATTAAAtctttattttagcgaatcg
tTTACAATCATTACCTTTAGCCCTTCACCAAGCCATTTGTTACATCAAAA
AACATAAAGTTCCTCTACACAAATACATCGAACAATTTAAAGTTTGCAGA
GAAAGTGTTTTAGGAATGAAAATCAATTCGTTTACTGAATATGACAAGAC
ATTGTTGACAGTTTGGGATATGGCTTTTGCGAAGATTCGGGTCGAATCAA
AGAATGCTCTTTTGGTCTTAGGAATGATGGCTTTCATGGACaatcgaaaa
atcaataaaaagacattcagttattttgataaaatagatGAATTTGAATT
AAATGAAATCATCAATCTGCTTTGTCAATATTCATTGGTCAACGAGCGGA
ATGAATGTTTAGAAATTCACAGTCTTGTGCAAAAAGTTATCCGATATCGT
ATTGAACAGAAACAATTTGTTGAGGATGAAAGTCCGTTGACACTTCTtga
agatgttcttttaaaaatcgagGTTTCTGTTACAGATTTGGTTATAAATG
CTGACTGTGAGGATTTATGGCACATTCATATTTTTCGTTTGATCATGAGT
GGTGCAATCAAAACTGTCAACTTTCATGTTTCTCTGTTGCTGAATATCGC
CACAGGCAGAATGGAGTTGGAGAACTTATACCAAATTTCTGAacttcttt
caaaagttttcttaaaacaataTAGGTTGTTTCGAGATGTGGAAACTTTT
CACATGTTGTTGCTTGTTCATGATCGTTTCATAAACGCGTCAATTCAATT
AGGTTTACTTAATTTGAATGagatttttgcttttgaaaaagAGTTTTCCT
CAGAGCTGGAAGAAAATTCTGTAGATGT
Run BLAST on NCBI

transcript from alignment at scaffold_485:117312..128976+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068478 ID=TCONS_00068478|Name=TCONS_00068478|organism=Clytia hemisphaerica|type=transcript|length=11665bp|location=Sequence derived from alignment at scaffold_485:117312..128976+ (Clytia hemisphaerica)
ATTGGAATTTGCCAGAGCCTGTTTCCATATTCTTTGGACGAGAAAATTTG
ATTGAATCTATTCACTTGAAACTTCAACAAAATCAAGCAATTGCTTTGAG
TGAAATGGGAGGTGTGGGGAAAACACAAACTGCTGCAAAGTTCGTTCAAA
CGCACAAGGATGAATATCAGAAGATATTTTGGATTTCTGCTGTCAGCCTC
AAGAAATCTTTGAACGAGATTTTGTGTGCATTTGGTTGTAAACAACTAAT
TCCTGATGAACCTTCAATGGAAACTCTTGCTTTCATTTTTCTCTCTAAGA
TTTGTGAAGGCTCCAAAAGATCGCTGGTTGTATTGGATGACGTCACTGAT
GTTACAAAAGATATCACTTTATTCATTCGaaatgtgaaagaaaaaatcaa
cttaTTGTTGACATCTCAATTGAGGGATTGGGAAGATTATGGTTTGATTC
AAATTGCGGTTCCATGTTTCCAAGAACAAGAATCCATTGGCTTCTTACAG
AATGAACTTTCTTCAGCCAGCCAACATTAAAtctttattttagcgaatcg
tTTACAATCATTACCTTTAGCCCTTCACCAAGCCATTTGTTACATCAAAA
AACATAAAGTTCCTCTACACAAATACATCGAACAATTTAAAGTTTGCAGA
GAAAGTGTTTTAGGAATGAAAATCAATTCGTTTACTGAATATGACAAGAC
ATTGTTGACAGTTTGGGATATGGCTTTTGCGAAGATTCGGGTCGAATCAA
AGAATGCTCTTTTGGTCTTAGGAATGATGGCTTTCATGGACaatcgaaaa
atcaataaaaagacattcagttattttgataaaatagatGAATTTGAATT
AAATGAAATCATCAATCTGCTTTGTCAATATTCATTGGTCAACGAGCGGA
ATGAATGTTTAGAAATTCACAGTCTTGTGCAAAAAGTTATCCGATATCGT
ATTGAACAGAAACAATTTGTTGAGGATGAAAGTCCGTTGACACTTCTtga
agatgttcttttaaaaatcgagGTTTCTGTTACAGATTTGGTTATAAATG
CTGACTGTGAGGATTTATGGCACATTCATATTTTTCGTTTGATCATGAGT
GGTGCAATCAAAACTGTCAACTTTCATGTTTCTCTGTTGCTGAATATCGC
CACAGGCAGAATGGAGTTGGAGAACTTATACCAAATTTCTGAacttcttt
caaaagttttcttaaaacaataTAGGTTGTTTCGAGATGTGGAAACTTTT
CACATGTTGTTGCTTGTTCATGATCGTTTCATAAACGCGTCAATTCAATT
AGGTTTACTTAATTTGAATGAGATTTTTGCTTTCGAAGAAGAGTTTTCCA
CAGAACTTGAAGAACATTCTGAAGAAGTTTACCGTTGGAAGCTACTACAA
GCTCAGGCATATAATAGACATGGAAGAGTGTCGTTATGCAATGATATTGT
TCGAAATTTATTCAATGAACTAGTCAAAAAGAAAGGATTTGACTATATTA
AATTAATATTGGCGAGTTTTTTCACGGTAAGGGATGTCGAAGTTTTGTTG
AATACCGTTGacacaatgccggacaaaaggttgtagacaaatgaaatttc
agtgaaaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNgaaccacaagcaaaaaatcagcgttttgatactggtgtaagcca
gttaatcaagcccttgtggtttgcccttgcggttagactgcagtgggtga
ctttcaaacagctttgaatggatttgaatgggtttggaaagcacccagag
cctcttgggaacttgtttttgatcgatattgaagtattttgcaaatattg
cagaagtctaccaaccttttgtccagcattgcaCAAATAATCTCAGTGAC
ACGGAACTTTTGGTTTATTATAATGCAAAATGTTCTTTATACATCATGAG
CGGTTGCTTTGATTTGGCTGAACAAGTCATGCAGGATTGGAAAGAACGCA
TACACAGAAAACAATTTCCTCGAATGTTGCActttaatttcacaaaaatg
aatTGCTTTTTACTTTACAAGAAAGGAAATTACAACGAAGCACTACTTGC
TTGCGATGAACTTAAACGAGACAGTGTCTTTACTGATGCTGATGTTTTCA
NTTTCTTTACAAGAAAGGAGATTACAACGAAGCACTACTAGTTTGCGATG
AACTTAAACGAGGCATTGTTTTTACTGATGCAGATGTTCTCGTTTGGGAA
GCCttgattttgatcaaattaGGAAAGTTCAACGAGGCAGAGGTGTTACT
TGATGACTTGAATCAACGCAATAATGCATTTATCATTAGAATCAGCTCAT
CCCTGAAATTTCGAAAGCACGACTTTGAAGCAGTAGTAAAGCTCCTCGCA
AATGTGGAAGATGAGCGTTTGTCGAATCTTTTGTTTTTGGTAAAGGGATA
TTTGAAACTGCATCGACAACTAGAAAATAATAAATCGAGAGGAANcaggg
tcacttttttcgcaaatttcgagtcccacgtagggtccatttttcggagc
ggagcacccccgtcggtcgacaagggtagtaccccccagGGGTACTTCCG
CCATTCAGTCaaatttttgtccaatttcTGTCACACCGTCAAGATCCAGA
CCGAAATTCTGCCACTGAAAATTCCCTTTGAActtaattatttttctaaa
attcctgaattttgactttttcttttggttccAACTTCCGAACGAATTTT
TTACGAGTTTAGTATGTACGAGAAGTTAGGAGGCTTCGTCACTCTACAAC
ACCCTTTTGAAGTGAAAGTGATCTTACTAAAAACTTTGACGTCGCTCAAA
ATAGCTGACACGTTGattttcattcttctttttttttatctagaaTTTTC
CACAGTGATGGATTTGAAATTGACGCTGAAAGCTGACAAatatgaaattg
atttttttcttgaaaattctagaattttgactttttggtgCAAATTCCGA
AATTCCAAGCGATTTTGTTTAACCTTTCCGGCacgctgttttttatattt
tcacgctGTCTGTGCGCAactatttttgagaaaacgcgGGGTTTGGGAAA
AGTgccataactcaagaactagaaatcttttggcaaaaagtaaactatcc
ctgaaaagctaattaAGTTTTGCAGCTTTTAGGTTGGGTACAAGTTCAAT
TAAAGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGAATCTTGTTAAC
TTTTTAACCTCTTGACACTGAATTCTGGTGTCATTGAATATcagtttttg
ttttactttagaTCTAGCCAAGTCAATGAATATGAAAGCTGATAAAGATG
AAATGGATggtatgttttgtttctttacTTGTTATATATTTTGGAGGAAA
TTGTAACCTCAAAAGCATATCTGATAATTAATATATAATAAAAAGTTGGA
GGCTACCCGGGTATCTACCTTAAAAAGCCTCTCTGAAGATTGTCTAATAA
AAAGTAGGAGGCATCGCCAAGTTGACGTTCTAAATAAAACTGatcctttt
gaaaaatattcatttcttCTTGTTATATATGTTACAGTTTTTAGACATCC
TCTGTATTATAAGAAGctttttgtaatatattttcacTATCTTTCTGTCT
GAATAGGCATTTTCCGATAAAAATCACTATTTGTCTTACTCCAGGTTTAG
CCAAGTCAATGGATAGTAGACTGATTACGAAGGCTGATAAAGATGAAATG
GATggtatgttttatttatttacttattttatAGTTTGGAGTAAATAGTA
TCCACTTTAAAAGCCTATCCGATGATTGtctaaaaaaattacgagacaTC
GCTAAGTTGACGTTCTAAATGAAATCGctccttataaaaaatattgaatt
tttctgtttgaataGACATTTCCCGATAAATATCACTATCTTATATTTAC
TATTTACTTTAGGTTTAGCCAAGTCAATGAATACGAAAGCTGATAAAGAT
GAAATTCatggtattttttgtttgtttaattctttttggacctacctccg
ggtgccccggtggaggttctataaattaacccatgtccgttcgtccgttc
gtccgttcgttcgtccgtctgttcgtccgtctgttaccagcttttctcag
gattggctcattagttttttctggttGTTTGCagaatgatgcaaaatggc
aatgcccagaacgtgacggagcccgatttttgagaaaaaatttatttggg
caaatttgggccaaaaactacctaaaaatagggttttttgaactttgtgc
aaaatcctgttattacttttttctgattttttgtacaaagatggagggca
agattctctaaagaatggctgaagtggtttttcccggaaaattcttattc
gcctgaaaaaacggattttcgtattttgggggaaattccctttaaccaaa
taagaaaatatagcttttaagaatgttgactcattatttttttctgattt
tttgcacaatgatgcaaaatggcaatgcctaaaatgagTTGGAGCCCGGt
tttcgaataaaaatatatttgggcaaatttgggccaaaaactgcctaaaa
atagggtttttggactttgtgcaaaatcctgtttttacttttttctgatt
ttttgtacaaagatggagggcaagattctctaaagaatgactgaagtggt
ttttcccgggaaattcttattcgccttaaaagaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNcgccttaaaagacggattttcgtattttggggaaattccctttaacc
aaataagaaaatacagcttttctcaatgttgactcataatctttttctga
tttttttgcacaatgatgcaaaatggcaatgcccaaaatgtgacggagcc
agatttaaaaaaaaaataaattattttgggcaaatttgggccaaaaacag
ctgaaaaggtttttttgggcctaagtgattttcgtatttggggaaattcc
tttttaccattttacaagCGAAATTGACGTTGAAGGCTGACATGTGCCAA
ATTGATGGTAAAGTTATACCAGATAAATTTGTTGTGTTTGTCGAATGTTT
TTTCCTCCTCTTTTGAGGTGGTCTGCTAGcaacttttttcatcaaaataa
aactttagcgttattcagatttcaaatgCTTCTAGTCGATGAAAAATGTG
TGTTCCGAGACCTTTACAAATTTCCTCTGTTGTCTACACGaagtttattt
ttattcttttaacgGAATATTGCTGAATAAGAAGGCCTTTTctgataaat
ataatttttggacctaccccggtggggtgtaggtcctataaattaacctg
ttttcgttcgttcgttcgtccgtccgttcgtccgttcgtctgttaccaac
ttttctcaggattgagtcataggaattttttgatttttggtaaaaaaggT
GCGAAAtggtgatggccaaaatgtgacggagcccgattttcaaaaaaaag
ttttggggcaaatttggaccATAAAACGGCTAAAgaacggtttttttgga
ctttgtgaaaaattggatcattaattttttcggattttttgcatgaaagt
agggtaccatcataggtaaaagatggctcaagcagatttttgcaaaNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNtgaagaatatgtgtgtttagacatgaaattttggctgcttgacgtgtt
tttatagaaaaactggccaaattcgatatctttttataagcacattatca
ataattacttaggtattagcttttcaagagattggctctttcattcttaa
tgattttttgcacaaagatgcataactataaaccctcgaatgtgacggag
cccgattttcgaaaaaagtgtttttgggcaaatttgagccaaaaaaaggc
taaaaaaacgggtttgattttttgcatgaaagtaggtaaaagatggttca
tttttgtgaaaaagtgaattttcagctcaaaaaacgcatctttatctata
agaatctttattaataagcatacatcaatgttattagccaaataactttt
tttgctcacgaagtcttgaacatgaaagaatatttcaagagcatataaga
aacaaacgattAATTTTAATAGATAGTCACTATTTCTTCTGAATAATTgc
ttaatggtcacgctcacgtagatatcaattatatatgtgttaaatgcata
accaggtaggtccataaaagtatcacttgttttttacAGAATTAAGCAAC
AAAGTTGATCAGCTATCAATGGAATCAAAATCTCTAAAGGGTAAAGCTTT
AGCTATGATTGCTATTTTCTCTATCCATGCTTAACCCTAATCGTACTAAG
GGGGGGGTTGCTTCTGTTTGGAGGTCAGATTAATGGTAATAGCTATATAT
AATAGATTTTAGACTCAgccaacttttttctaaagcctttgttagattGC
ATTAgctatttataaaaacaaaggaaattttcagcagaaagattttttgt
caaaagttgccttaTATGACAAGGTTCTTgtatgccaaatttcattcCAA
AAGAACCACTAAATCAAAAGTTAATGGGTGGTACAAGAAAacccccctag
ttttgaactGCCCCTAAATTTATTCAAAGAAACTTTATTTGTTATTTGTC
ACCTTTTTTGTATTCATTCTAGACACAACAAAGACACATTGGAATTTGCC
AGACCCTGTTTCCATCTTCTTTGGACgagaaaatttgattaaatcCATTC
ACTTGAAACTTCAACAAAATCAAGCAATTGCTTTGAGTGAAATGGGAGGT
GTGGGGAAAACACAAACTGCTGCAAAGTTCGTTCAAATACACAAGGATGA
ATATCAGAAGATATTTTGGATTTCTGCTGTCAGCCTCAAGAAATCTTTGA
ACGAGATTTTGTGTGCATTTGGCTGTAAACAACTAATACCTGATGAACCT
TCGATGGAAACTCTGACTTTCATTTTCCTCTCTAAGATTTGTGAAGGCTC
CAAAAAATCGCTGGTTTTATTGGATGACGTCACTGAGGTCACAAAAGACG
TCACTTCTTTCATTCGaaatgtgaaagaaaaaatcaacttaTTGTTGACA
TCCCAATTGAAAGATTGGGAAGATTATGGTTTGTTTCAAATTGCTGTTCC
ATGTTTCCATGAACAAGAATCCATTGGCTTCTTACAGAATGAACTTTCTT
CAGCCAACCAACATGAAATCTCCATTTTAGCGAATCGTTTACAATCATTA
CCTTTAGCCCTTCACCAAGCCATTTGTTACATCAAAAAACATAAAGTTCC
TCTACAAAAATACATCAAACAATTTGAAGCAtgcagaaaaagtgttttgg
gAATGAAAATTAATTCCTTTACTGAATATGACAAAACATTGTTGACAGTT
TGGGATATGGCTTTCGCGAAGATTCGGGTCGAATCAAAGAATGCTATTTT
GATCTTGGGAATGATGGCTTTCATGGACAAttgcaaaatcaacaaaaaga
cATTCAGTTATTTTGATAAAGTTAGCGAATTTGAATTAAATGAAATTATC
AATCTGCTTTGTCAATATTCATTGGTCAACGAGCGGAACGAATGTTTAGA
AATTCACAGTCTTGTGCAAAAAGTTATCCGATATCGTATTGAACAAAAAC
AATTTGTCGAGGATGAATGTCCGTTGACACTTCTTGAAGGTGTGCTTTTG
AAAATCGAGTCTTCTCTTGAAGATTTGGTTGCAAATGATGACTCCCAGGA
TTTATGGTACATTCATGTTTTTCGTTTGATCATGAGTGGTGCACTAAAAA
CTTTCAACTTTGATATTAACCTGGTGTTAAATATCGCCACAGGCAGAATG
GAGTTGGAAAACTTATACCTACTTGCTGAacttctttcaaaagttttgtt
aAAACAATATCGGTTGTTTCGAGATGTGAAAACTTTTTATACGTTGTTGC
TTGTTCATCATCGTTTCATAAACGCGTCAAGTCAATTAGGTTTACTTAAT
TTGAATGagatttttgcttttgaaaaagAGTTTTCCTCAGAGCTGGAAGA
AAATTCTGTAGATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042709XLOC_042709Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068478-exon-scaffold_485-1491911889:117312..118613TCONS_00068478-exon-scaffold_485-1491911889:117312..118613Clytia hemisphaericaexon
TCONS_00068478-exon-scaffold_485-1510915933:117312..118613TCONS_00068478-exon-scaffold_485-1510915933:117312..118613Clytia hemisphaericaexon
TCONS_00068478-exon-scaffold_485-1575043694:117312..118613TCONS_00068478-exon-scaffold_485-1575043694:117312..118613Clytia hemisphaericaexon
TCONS_00068478-exon-scaffold_485-1491911889:128901..128976TCONS_00068478-exon-scaffold_485-1491911889:128901..128976Clytia hemisphaericaexon
TCONS_00068478-exon-scaffold_485-1510915933:128901..128976TCONS_00068478-exon-scaffold_485-1510915933:128901..128976Clytia hemisphaericaexon
TCONS_00068478-exon-scaffold_485-1575043694:128901..128976TCONS_00068478-exon-scaffold_485-1575043694:128901..128976Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:117312..128976 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.185706	0.00085434	0.0314664	0.313585	0	0.797546	0.516458	0.396319	0.381998	0	0	0.409003	0.140068	0	0.631316	0.343486	0.10854	0.225217	0.841488	0.232018	0.22084	0.687144	0.00948559	0.424452	0.479228	2.38139	1.95327	0.507686	0.113844
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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