TCONS_00068474 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068474
Unique NameTCONS_00068474
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068474 ID=TCONS_00068474|Name=TCONS_00068474|organism=Clytia hemisphaerica|type=transcript|length=339bp
GTGACCACGAGGATTTATGGTACATTCATGTTTTTCGTTTGATCATGAGT
GGTGCATTCAAAGGAATCAACTTTGATGTTAACCAGGTGTTAAATATCGC
CGTAGGTAGAATGGAGATGGAGAATTTATACCTACTTACTGAActtcttt
caaaagatttgtTAGAACAATATAGGTTGTCTCGAGCTGTGGAAACTTTT
CACGGTTTATTGCTTGTTTATCGTCGTTTCATGGACGCGTCAATTCAATT
AGGTTTACGTAATTTGGATGagatttttgcttttgaagAAGAGTTTTCCT
TAGAGCTTGAAGAAAATTCTGTGGAAGTTTACTTGTGGA
Run BLAST on NCBI

transcript from alignment at scaffold_485:101373..101711+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068474 ID=TCONS_00068474|Name=TCONS_00068474|organism=Clytia hemisphaerica|type=transcript|length=339bp|location=Sequence derived from alignment at scaffold_485:101373..101711+ (Clytia hemisphaerica)
GTGACCACGAGGATTTATGGTACATTCATGTTTTTCGTTTGATCATGAGT
GGTGCATTCAAAGGAATCAACTTTGATGTTAACCAGGTGTTAAATATCGC
CGTAGGTAGAATGGAGATGGAGAATTTATACCTACTTACTGAActtcttt
caaaagatttgtTAGAACAATATAGGTTGTCTCGAGCTGTGGAAACTTTT
CACGGTTTATTGCTTGTTTATCGTCGTTTCATGGACGCGTCAATTCAATT
AGGTTTACGTAATTTGGATGagatttttgcttttgaagAAGAGTTTTCCT
TAGAGCTTGAAGAAAATTCTGTGGAAGTTTACTTGTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042709XLOC_042709Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068474-exon-scaffold_485-1491911889:101373..101711TCONS_00068474-exon-scaffold_485-1491911889:101373..101711Clytia hemisphaericaexon
TCONS_00068474-exon-scaffold_485-1510915933:101373..101711TCONS_00068474-exon-scaffold_485-1510915933:101373..101711Clytia hemisphaericaexon
TCONS_00068474-exon-scaffold_485-1575043694:101373..101711TCONS_00068474-exon-scaffold_485-1575043694:101373..101711Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:101373..101711 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0640393	0	0	0.0556257	0	0	0	0	0.755233	0	0	0	0	0.0579536	0	0	0	0	0	0	0	0	0.101896	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top