TCONS_00068433 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068433
Unique NameTCONS_00068433
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length665

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068433 ID=TCONS_00068433|Name=TCONS_00068433|organism=Clytia hemisphaerica|type=transcript|length=665bp
cagaaatATGAAGACAATCATACTCATTGCACTTCTTCCACTGTTGGCCA
ATGAAGCTTTTGGATTCCTCAAGTTTGGTCCCTGGAATTGTCGTAATTTG
GCCTGCTTCTTGAAAGAAGGCCAGACGATCCATAGCAGAACGCTGAAAAC
TTGGAACTACCGCACATGTGGTTCTATTGGTGGCCTATCATGTTCGGCCG
CAAACGACCGCGTCGCAAGTCGGTGCCAATCAGATTTAAACAATGGTGGT
ATCCAATTACAAGTTTGCAATGCGAAGAAAGCAAATGTCCCAAATTGGCC
GAATAAATTGACCGTTTGGGTTACCAAAATGGGGAAAGCTAATTGCATGT
CAAACAACGCCAACAACTTTTGGATGGATAAGGATCATCATGGCGTTCCA
AAAAAGCGCGCCTTCTGCTGCACAAAGTACTCCCCGTTGCCTTGGTTACC
AGCTAAAATTTACAATCTTCCATGCTAAGGAGttttatttgtaattttca
TATGCAATTAACATATACACGAAATAgatttaatttgttttgtttaataa
caataactttttttcttgtcattATCCAACCAACATTTTGAAtctaaaaa
aaacatatatcgtTTAAAAGATAATATTCAGAGCACTTTAGTGTTCGAGA
AAAattattccaaaa
Run BLAST on NCBI

protein sequence of TCONS_00068433-protein

>TCONS_00068433-protein ID=TCONS_00068433-protein|Name=TCONS_00068433-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
RNMKTIILIALLPLLANEAFGFLKFGPWNCRNLACFLKEGQTIHSRTLKT
WNYRTCGSIGGLSCSAANDRVASRCQSDLNNGGIQLQVCNAKKANVPNWP
NKLTVWVTKMGKANCMSNNANNFWMDKDHHGVPKKRAFCCTKYSPLPWLP
AKIYNLPC
Run BLAST on NCBI

transcript from alignment at scaffold_484:4937..5601

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068433 ID=TCONS_00068433|Name=TCONS_00068433|organism=Clytia hemisphaerica|type=transcript|length=665bp|location=Sequence derived from alignment at scaffold_484:4937..5601 (Clytia hemisphaerica)
ttttggaataatTTTTCTCGAACACTAAAGTGCTCTGAATATTATCTTTT
AAacgatatatgttttttttagaTTCAAAATGTTGGTTGGATaatgacaa
gaaaaaaagttattgttattaaacaaaacaaattaaatcTATTTCGTGTA
TATGTTAATTGCATAtgaaaattacaaataaaaCTCCTTAGCATGGAAGA
TTGTAAATTTTAGCTGGTAACCAAGGCAACGGGGAGTACTTTGTGCAGCA
GAAGGCGCGCTTTTTTGGAACGCCATGATGATCCTTATCCATCCAAAAGT
TGTTGGCGTTGTTTGACATGCAATTAGCTTTCCCCATTTTGGTAACCCAA
ACGGTCAATTTATTCGGCCAATTTGGGACATTTGCTTTCTTCGCATTGCA
AACTTGTAATTGGATACCACCATTGTTTAAATCTGATTGGCACCGACTTG
CGACGCGGTCGTTTGCGGCCGAACATGATAGGCCACCAATAGAACCACAT
GTGCGGTAGTTCCAAGTTTTCAGCGTTCTGCTATGGATCGTCTGGCCTTC
TTTCAAGAAGCAGGCCAAATTACGACAATTCCAGGGACCAAACTTGAGGA
ATCCAAAAGCTTCATTGGCCAACAGTGGAAGAAGTGCAATGAGTATGATT
GTCTTCATatttctg

Coding sequence (CDS) from alignment at scaffold_484:4937..5601

>TCONS_00068433 ID=TCONS_00068433|Name=TCONS_00068433|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at scaffold_484:4937..5601 (Clytia hemisphaerica)
TTAGCATGGAAGATTGTAAATTTTAGCTGGTAACCAAGGCAACGGGGAGT
ACTTTGTGCAGCAGAAGGCGCGCTTTTTTGGAACGCCATGATGATCCTTA
TCCATCCAAAAGTTGTTGGCGTTGTTTGACATGCAATTAGCTTTCCCCAT
TTTGGTAACCCAAACGGTCAATTTATTCGGCCAATTTGGGACATTTGCTT
TCTTCGCATTGCAAACTTGTAATTGGATACCACCATTGTTTAAATCTGAT
TGGCACCGACTTGCGACGCGGTCGTTTGCGGCCGAACATGATAGGCCACC
AATAGAACCACATGTGCGGTAGTTCCAAGTTTTCAGCGTTCTGCTATGGA
TCGTCTGGCCTTCTTTCAAGAAGCAGGCCAAATTACGACAATTCCAGGGA
CCAAACTTGAGGAATCCAAAAGCTTCATTGGCCAACAGTGGAAGAAGTGC
AATGAGTATGATTGTCTTCATatttct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042706XLOC_042706Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068433-proteinTCONS_00068433-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068433-exon-scaffold_484-1491911889:4937..5601TCONS_00068433-exon-scaffold_484-1491911889:4937..5601Clytia hemisphaericaexon
TCONS_00068433-exon-scaffold_484-1510915933:4937..5601TCONS_00068433-exon-scaffold_484-1510915933:4937..5601Clytia hemisphaericaexon
TCONS_00068433-exon-scaffold_484-1575043694:4937..5601TCONS_00068433-exon-scaffold_484-1575043694:4937..5601Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_484supercontigscaffold_484:4937..5601 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.209841	0.0829095	0.339059	0.842795	6.09323	9.94996	25.0818	5.72527	6.132	27.8092	0	0.202457	43.1062	16.7947	3.86652	30.7831	0.559107	0.701046	6.4085	86.9975	73.6524	169.342	3.72054	8.51361	11.8814	8.02761
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068433 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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