TCONS_00068431 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068431
Unique NameTCONS_00068431
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068431 ID=TCONS_00068431|Name=TCONS_00068431|organism=Clytia hemisphaerica|type=transcript|length=449bp
CAACAACAGAAATTCTTCTCGAGTATTTACAAAATGGTCCGTATCTCCTT
TTTGGTGACTTGTTTTCTCTTCCTATTGATATCATCATTTCATTGCAATG
GGTTCCAGTTTCAAGAATTCGGAATGTTAGCTTGCACTAAAACAAATAAT
ATAACCATTATTGCTGATGGTATTGGGTTCGATTTTCTGGATGACCTCTT
GCAACGCTTGGAACCTTTGACATGGAACGAAGGTTGCTTCATGATCAATG
TATACCTTCCAAGTGATGGTTTTGTTATTCAATGGCGACCGAACTTCAAT
GTCAAtcattttgaaaggaatttttttcgcagtagatacTTCTCGAATGT
AATTCGTGAAAGCGATATTGAAAGTTTCTTGAAGCGTCTTTATAACGAAG
AAGTGAGGGGGGACGACACTGTCAAACAAACATTGgtctatttattttt
Run BLAST on NCBI

protein sequence of TCONS_00068431-protein

>TCONS_00068431-protein ID=TCONS_00068431-protein|Name=TCONS_00068431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
QQQKFFSSIYKMVRISFLVTCFLFLLISSFHCNGFQFQEFGMLACTKTNN
ITIIADGIGFDFLDDLLQRLEPLTWNEGCFMINVYLPSDGFVIQWRPNFN
VNHFERNFFRSRYFSNVIRESDIESFLKRLYNEEVRGDDTVKQTLVYLF
Run BLAST on NCBI

transcript from alignment at scaffold_483:613289..613737

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068431 ID=TCONS_00068431|Name=TCONS_00068431|organism=Clytia hemisphaerica|type=transcript|length=449bp|location=Sequence derived from alignment at scaffold_483:613289..613737 (Clytia hemisphaerica)
aaaaataaatagacCAATGTTTGTTTGACAGTGTCGTCCCCCCTCACTTC
TTCGTTATAAAGACGCTTCAAGAAACTTTCAATATCGCTTTCACGAATTA
CATTCGAGAAgtatctactgcgaaaaaaattcctttcaaaatgaTTGACA
TTGAAGTTCGGTCGCCATTGAATAACAAAACCATCACTTGGAAGGTATAC
ATTGATCATGAAGCAACCTTCGTTCCATGTCAAAGGTTCCAAGCGTTGCA
AGAGGTCATCCAGAAAATCGAACCCAATACCATCAGCAATAATGGTTATA
TTATTTGTTTTAGTGCAAGCTAACATTCCGAATTCTTGAAACTGGAACCC
ATTGCAATGAAATGATGATATCAATAGGAAGAGAAAACAAGTCACCAAAA
AGGAGATACGGACCATTTTGTAAATACTCGAGAAGAATTTCTGTTGTTG

Coding sequence (CDS) from alignment at scaffold_483:613289..613737

>TCONS_00068431 ID=TCONS_00068431|Name=TCONS_00068431|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at scaffold_483:613289..613737 (Clytia hemisphaerica)
aaataaatagacCAATGTTTGTTTGACAGTGTCGTCCCCCCTCACTTCTT
CGTTATAAAGACGCTTCAAGAAACTTTCAATATCGCTTTCACGAATTACA
TTCGAGAAgtatctactgcgaaaaaaattcctttcaaaatgaTTGACATT
GAAGTTCGGTCGCCATTGAATAACAAAACCATCACTTGGAAGGTATACAT
TGATCATGAAGCAACCTTCGTTCCATGTCAAAGGTTCCAAGCGTTGCAAG
AGGTCATCCAGAAAATCGAACCCAATACCATCAGCAATAATGGTTATATT
ATTTGTTTTAGTGCAAGCTAACATTCCGAATTCTTGAAACTGGAACCCAT
TGCAATGAAATGATGATATCAATAGGAAGAGAAAACAAGTCACCAAAAAG
GAGATACGGACCATTTTGTAAATACTCGAGAAGAATTTCTGTTGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042704XLOC_042704Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068431-exon-scaffold_483-1491911889:613289..613737TCONS_00068431-exon-scaffold_483-1491911889:613289..613737Clytia hemisphaericaexon
TCONS_00068431-exon-scaffold_483-1510915933:613289..613737TCONS_00068431-exon-scaffold_483-1510915933:613289..613737Clytia hemisphaericaexon
TCONS_00068431-exon-scaffold_483-1575043694:613289..613737TCONS_00068431-exon-scaffold_483-1575043694:613289..613737Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068431-proteinTCONS_00068431-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_483supercontigscaffold_483:613289..613737 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.147824	0.144152	0.334748	0.327498	0.665843	0.472584	0.190051	0	0.124568	0	0	0	6.46883	4.95827	4.44429	4.84328	0.998738	1.90969	0.246594	1.3617	0	0.209141	0	0.162119	0	0	0	0	0.656292	0.445119
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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