TCONS_00068427 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068427
Unique NameTCONS_00068427
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length827

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068427 ID=TCONS_00068427|Name=TCONS_00068427|organism=Clytia hemisphaerica|type=transcript|length=827bp
CCACCGgggaactttgcctgactattTAGTCGGTCTCaccggagaacttt
gcctgactgcttagtcaGCTCTGAGCAAGGTACAAATATccagaaaaagc
actccaggcatgctccacgtccataccaggatgaaagCACCTGTTCTCGT
CAGATCACGGAATTTAAgcatagtacttggatgggggaccccctgggaac
tcccggtgccGTGGAGCGGAGGTGGAGGTTTTTCTCCTAGTGAATNagta
cttggatgggggaccccctgggaactcccggtgccGTGGAGCGGAGGTGG
AGGTTTTTCTCCTAGTGATGTTAGTAATGCTATGCTATGCTTTTGGGTGG
TGCTGCTTTACTTTTGCACCTTTAgccaagcctcaagaatgctctaaggg
CGCTTtagagctcattaacaagccctcacaccccAGCGCTCGGCCAGCAG
TAAGCCcagtggtccaaagttcacgcACTGGGGATCCCCTGATCGAATCC
GATCAGGTTCGGTCTActttttgaccaggttttgatattttatgtttttt
tggtgTTGATTCTAAATAAAGTGGTccaaagtcctgaaaagttcacggaa
aggctATAGAGGGGGTTCAGAACTCGTACCAGACCAGCTCGGAGCCCCCG
GTGTGATGGAAAGCAGTGCGACGTTTCTACAACTCGTGAACGACTTGGCG
GTGACGTACACCATCAACCAAGACCAAGATATACTCTGAGGAgtccctaa
tgagctctggACCAAGTCAAGCTAGCGAAGGAATGACACCCCTGAGAAAT
TTCGCCAGCGCAAGGCTTGAAGTTGGC
Run BLAST on NCBI

transcript from alignment at scaffold_483:550662..551488

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068427 ID=TCONS_00068427|Name=TCONS_00068427|organism=Clytia hemisphaerica|type=transcript|length=827bp|location=Sequence derived from alignment at scaffold_483:550662..551488 (Clytia hemisphaerica)
GCCAACTTCAAGCCTTGCGCTGGCGAAATTTCTCAGGGGTGTCATTCCTT
CGCTAGCTTGACTTGGTccagagctcattagggacTCCTCAGAGTATATC
TTGGTCTTGGTTGATGGTGTACGTCACCGCCAAGTCGTTCACGAGTTGTA
GAAACGTCGCACTGCTTTCCATCACACCGGGGGCTCCGAGCTGGTCTGGT
ACGAGTTCTGAACCCCCTCTATagcctttccgtgaacttttcaggacttt
ggACCACTTTATTTAGAATCAAcaccaaaaaaacataaaatatcaaaacc
tggtcaaaaagTAGACCGAACCTGATCGGATTCGATCAGGGGATCCCCAG
TgcgtgaactttggaccactgGGCTTACTGCTGGCCGAGCGCTggggtgt
gagggcttgttaatgagctctaAAGCGcccttagagcattcttgaggctt
ggcTAAAGGTGCAAAAGTAAAGCAGCACCACCCAAAAGCATAGCATAGCA
TTACTAACATCACTAGGAGAAAAACCTCCACCTCCGCTCCACggcaccgg
gagttcccagggggtcccccatccaagtactNATTCACTAGGAGAAAAAC
CTCCACCTCCGCTCCACggcaccgggagttcccagggggtcccccatcca
agtactatgcTTAAATTCCGTGATCTGACGAGAACAGGTGctttcatcct
ggtatggacgtggagcatgcctggagtgctttttctggATATTTGTACCT
TGCTCAGAGCtgactaagcagtcaggcaaagttctccggtGAGACCGACT
AaatagtcaggcaaagttcccCGGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042700XLOC_042700Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068427-exon-scaffold_483-1491911889:550662..551488TCONS_00068427-exon-scaffold_483-1491911889:550662..551488Clytia hemisphaericaexon
TCONS_00068427-exon-scaffold_483-1510915933:550662..551488TCONS_00068427-exon-scaffold_483-1510915933:550662..551488Clytia hemisphaericaexon
TCONS_00068427-exon-scaffold_483-1575043694:550662..551488TCONS_00068427-exon-scaffold_483-1575043694:550662..551488Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_483supercontigscaffold_483:550662..551488 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.114815	0.111962	0.0659367	0.449045	0.246342	0.30588	0.542447	0.760061	0.580513	0.682601	1.22139	0.994057	2.21443	1.90321	1.23872	2.54047	0.560241	0.530058	2.37999	2.80978	1.55413	1.38074	0.526577	0.299209	1.7258	2.25535	0.629735	0.588061	0.0637177	0.259673
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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