TCONS_00068423 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068423
Unique NameTCONS_00068423
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length732

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068423 ID=TCONS_00068423|Name=TCONS_00068423|organism=Clytia hemisphaerica|type=transcript|length=732bp
TTTTGTTtgtatgttgtttttttcttttcattttcaaaacttttgtaCTG
CTTGGTTAAAATTGAtttatctaaaaattttgaaaaaaggaacaaaaaaa
tACACTCTCAAAAATATACACCTTTCTATATTTTGAACGGCTAACAAACT
TTATCgttaaaattctaaaatatttaaacttgaaaataaaCTTCATACGA
AAATACTATCAACAATAGTGAATGTTAAAAATCTtctaatatttacaaaa
aattagtCCTCAAATCGGACTTATAAAAGAACCAATCGCAAATGGTTTTT
GAAATGGATTTTGTCTGacgaaaagaaataaaattcgaATCATAGGCTTC
TGTTCAAAAAATGGGGGAAAATAATATCAgaattcacaaaaatttatgta
attgGCAAAAATGCTTTCTTGCGTGTAAAGGTGCTTGCAAAATATTCtcc
aattaatttttttaacttttttacaaTGGTAAGAGATTTCACTTGCAAAA
TAAGCATATCTTCGTGTAAAACTCATGGCGTTTTAAATTGATAACGCTAT
ACACCTtttcgcgcggtcaggcgcgtacTGGGACGGCTTTAGGGTGGAAA
AACGTACAAAAAATGCCCACGCAGTGATTGacagctacggtcgaaaaggc
gtATTGTgcatattctattttcaatatCTTTCAGGTATCAGAAGAAAGGT
TAGAAAAAGTTTACGGTTAGAAACTCGTANct
Run BLAST on NCBI

transcript from alignment at scaffold_483:443505..444236

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068423 ID=TCONS_00068423|Name=TCONS_00068423|organism=Clytia hemisphaerica|type=transcript|length=732bp|location=Sequence derived from alignment at scaffold_483:443505..444236 (Clytia hemisphaerica)
agNTACGAGTTTCTAACCGTAAACTTTTTCTAACCTTTCTTCTGATACCT
GAAAGatattgaaaatagaatatgcACAATacgccttttcgaccgtagct
gtCAATCACTGCGTGGGCATTTTTTGTACGTTTTTCCACCCTAAAGCCGT
CCCAgtacgcgcctgaccgcgcgaaaAGGTGTATAGCGTTATCAATTTAA
AACGCCATGAGTTTTACACGAAGATATGCTTATTTTGCAAGTGAAATCTC
TTACCAttgtaaaaaagttaaaaaaattaattggaGAATATTTTGCAAGC
ACCTTTACACGCAAGAAAGCATTTTTGCcaattacataaatttttgtgaa
ttcTGATATTATTTTCCCCCATTTTTTGAACAGAAGCCTATGATtcgaat
tttatttcttttcgtCAGACAAAATCCATTTCAAAAACCATTTGCGATTG
GTTCTTTTATAAGTCCGATTTGAGGactaattttttgtaaatattagaAG
ATTTTTAACATTCACTATTGTTGATAGTATTTTCGTATGAAGtttatttt
caagtttaaatattttagaattttaacGATAAAGTTTGTTAGCCGTTCAA
AATATAGAAAGGTGTATATTTTTGAGAGTGTatttttttgttcctttttt
caaaatttttagataaaTCAATTTTAACCAAGCAGtacaaaagttttgaa
aatgaaaagaaaaaaacaacatacaAACAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042696XLOC_042696Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068423-exon-scaffold_483-1491911889:443505..444236TCONS_00068423-exon-scaffold_483-1491911889:443505..444236Clytia hemisphaericaexon
TCONS_00068423-exon-scaffold_483-1510915933:443505..444236TCONS_00068423-exon-scaffold_483-1510915933:443505..444236Clytia hemisphaericaexon
TCONS_00068423-exon-scaffold_483-1575043694:443505..444236TCONS_00068423-exon-scaffold_483-1575043694:443505..444236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_483supercontigscaffold_483:443505..444236 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0678351	0.0661499	0.0768063	0.075143	4.39101	2.16865	1.83147	1.63295	0.971776	1.69934	1.16834	0.8132	0.36092	0.421671	0.038519	0.0413368	0	0	0.288441	0.0754581	0.0655868	0.191946	0.233335	0.212135	2.25778	2.27501	0.279046	0.198537	0.0752916	0.0767103
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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