TCONS_00068379 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068379
Unique NameTCONS_00068379
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068379 ID=TCONS_00068379|Name=TCONS_00068379|organism=Clytia hemisphaerica|type=transcript|length=503bp
GACGCATCTAGCGACATCAACCTGCTGCAGtctcaaattcaaaaacttca
GACTGAAGTTGCCAACGAAAAAGCTGAaatcaaagaattgaaatcaagag
TGCAAACACGAAATGGAATTTGTCAAATCAATTCGAATCGTTGTGGATCC
TGTTTGTGCGTCGAAGATTACAGTTTAGTAAATGACNTAAAATACTCACC
ACACTCATTCTCACCTGTAAAATACTTTTGTGATTGCCGTGAAAAGCCTG
TTAGAAGAGATTGCAAGGAACATTATGACAAAGGAGAGAGGATAAATGGC
CTTTATCGTGTTAGTATGAATGTTATTGGCCATGTCGTTCAAGTGTCTTG
TGTGCAGACTCTTAATCGTGGTGGTTGGACGGTATTTCAGCGTCGCTTCG
ACGGATCGGAGAATTTTTATCGCTCCTGGCAAGAATATAAACACGGTTTT
GGGAAACTTGAAGGTGAACATTGGCTgggaaatgaaaatttataCCGTTT
GAC
Run BLAST on NCBI

protein sequence of TCONS_00068379-protein

>TCONS_00068379-protein ID=TCONS_00068379-protein|Name=TCONS_00068379-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
DASSDINLLQSQIQKLQTEVANEKAEIKELKSRVQTRNGICQINSNRCGS
CLCVEDYSLVNDXKYSPHSFSPVKYFCDCREKPVRRDCKEHYDKGERING
LYRVSMNVIGHVVQVSCVQTLNRGGWTVFQRRFDGSENFYRSWQEYKHGF
GKLEGEHWLGNENLYRL
Run BLAST on NCBI

transcript from alignment at scaffold_483:231125..231683-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068379 ID=TCONS_00068379|Name=TCONS_00068379|organism=Clytia hemisphaerica|type=transcript|length=559bp|location=Sequence derived from alignment at scaffold_483:231125..231683- (Clytia hemisphaerica)
GACGCATCTAGCGACATCAACCTGCTGCAGTCTCAAATTCAAAAACTTCA
GACTGAAGTTGCCAACGAAAAAGCTGAAATCAAAGAATTGAAATCAAGAG
TGCAAACACGAAATGGAATTTGTCAAATCAATTCGAATCGTTGTGGATCC
TGTTTGTGCGTCGAAGATTACAGTTTAGTAAATGACGCATACTACCTCTT
ACCTGTAAATTATTTCTGTGATTGCCGTGAAAAGCCTGTTAGNTAAAATA
CTCACCACACTCATTCTCACCTGTAAAATACTTTTGTGATTGCCGTGAAA
AGCCTGTTAGAAGAGATTGCAAGGAACATTATGACAAAGGAGAGAGGATA
AATGGCCTTTATCGTGTTAGTATGAATGTTATTGGCCATGTCGTTCAAGT
GTCTTGTGTGCAGACTCTTAATCGTGGTGGTTGGACGGTATTTCAGCGTC
GCTTCGACGGATCGGAGAATTTTTATCGCTCCTGGCAAGAATATAAACAC
GGTTTTGGGAAACTTGAAGGTGAACATTGGCTGGGAAATGAAAATTTATA
CCGTTTGAC

Coding sequence (CDS) from alignment at scaffold_483:231125..231683-

>TCONS_00068379 ID=TCONS_00068379|Name=TCONS_00068379|organism=Clytia hemisphaerica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_483:231125..231683- (Clytia hemisphaerica)
NTAAAATACTCACCACACTCATTCTCACCTGTAAAATACTTTTGTGATTG
CCGTGAAAAGCCTGTTAGAAGAGATTGCAAGGAACATTATGACAAAGGAG
AGAGGATAAATGGCCTTTATCGTGTTAGTATGAATGTTATTGGCCATGTC
GTTCAAGTGTCTTGTGTGCAGACTCTTAATCGTGGTGGTTGGACGGTATT
TCAGCGTCGCTTCGACGGATCGGAGAATTTTTATCGCTCCTGGCAAGAAT
ATAAACACGGTTTTGGGAAACTTGAAGGTGAACATTGGCTGGGAAATGAA
AATTTATACCGTTTGGACGCATCTAGCGACATCAACCTGCTGCAGTCTCA
AATTCAAAAACTTCAGACTGAAGTTGCCAACGAAAAAGCTGAAATCAAAG
AATTGAAATCAAGAGTGCAAACACGAAATGGAATTTGTCAAATCAATTCG
AATCGTTGTGGATCCTGTTTGTGCGTCGAAGATTACAGTTTAGTAAATGA
CNTAAAATACTCACCACACTCATTCTCACCTGTAAAATACTTTTGTGATT
GCCGTGAAAAGCCTGTTAGAAGAGATTGCAAGGAACATTATGACAAAGGA
GAGAGGATAAATGGCCTTTATCGTGTTAGTATGAATGTTATTGGCCATGT
CGTTCAAGTGTCTTGTGTGCAGACTCTTAATCGTGGTGGTTGGACGGTAT
TTCAGCGTCGCTTCGACGGATCGGAGAATTTTTATCGCTCCTGGCAAGAA
TATAAACACGGTTTTGGGAAACTTGAAGGTGAACATTGGCTGGGAAATGA
AAATTTATACCGTTTGGACGCATCTAGCGACATCAACCTGCTGCAGTCTC
AAATTCAAAAACTTCAGACTGAAGTTGCCAACGAAAAAGCTGAAATCAAA
GAATTGAAATCAAGAGTGCAAACACGAAATGGAATTTGTCAAATCAATTC
GAATCGTTGTGGATCCTGTTTGTGCGTCGAAGATTACAGTTTAGTAAATG
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042671XLOC_042671Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068379-proteinTCONS_00068379-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068379-exon-scaffold_483-1575043694:231498..231683TCONS_00068379-exon-scaffold_483-1575043694:231498..231683Clytia hemisphaericaexon
TCONS_00068379-exon-scaffold_483-1575043694:231125..231441TCONS_00068379-exon-scaffold_483-1575043694:231125..231441Clytia hemisphaericaexon
TCONS_00068379-exon-scaffold_483-1510915933:231498..231683TCONS_00068379-exon-scaffold_483-1510915933:231498..231683Clytia hemisphaericaexon
TCONS_00068379-exon-scaffold_483-1510915933:231125..231441TCONS_00068379-exon-scaffold_483-1510915933:231125..231441Clytia hemisphaericaexon
TCONS_00068379-exon-scaffold_483-1491911889:231498..231683TCONS_00068379-exon-scaffold_483-1491911889:231498..231683Clytia hemisphaericaexon
TCONS_00068379-exon-scaffold_483-1491911889:231125..231441TCONS_00068379-exon-scaffold_483-1491911889:231125..231441Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_483supercontigscaffold_483:231125..231683 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.180919	0	0.688125	1.35787	0.611292	0.286366	0.41003	0.164593	0.424342	0	5.87654	2.12559	21.4305	35.9177	3.27664	4.19946	0	2.40838	4.33572	3.71012	15.1652	11.1787	3.42534	6.43729	0.831878	1.50075	48.6493	56.9775
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
Blast
[Close]
BLAST of TCONS_00068379 vs. Swiss-Prot (Human)
Match: FGL2 (Fibroleukin OS=Homo sapiens GN=FGL2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.878e-22
Identity = 59/169 (34.91%), Postives = 88/169 (52.07%), Query Frame = 1 
Query:   25 LQSQIQKLQTEVANEKAEIKELKSRVQTRNGICQINSNRCGSCLCVEDY--SLVNDXKYSPHSFSPVKYFCDCRE----KPVR----RDCKEHYDKGERINGLYRVSMNVIGHVVQVSCVQTLNRGGWTVFQRRFDGSENFYRSWQEYKHGFGKLEGEHWLGNENLYRL 501
            L+S++ KL +E+ N K EI  L  R++  N +   N         +E+Y  S V +  +  +S       C  +E    +PV+    +DC ++Y  G+R +  YRV+ +      +V C      GGWTV Q R DGS NF R+WQ+YK GFG L  E WLGN+ ++ L
Sbjct:  133 LESEVNKLSSELKNAKEEINVLHGRLEKLNLVNMNN---------IENYVDSKVANLTFVVNSLDGKCSKCPSQEQIQSRPVQHLIYKDCSDYYAIGKRSSETYRVTPDPKNSSFEVYCDMETMGGGWTVLQARLDGSTNFTRTWQDYKAGFGNLRREFWLGNDKIHLL 292
The following BLAST results are available for this feature:
BLAST of TCONS_00068379 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FGL23.878e-2234.91Fibroleukin OS=Homo sapiens GN=FGL2 PE=1 SV=1[more]
back to top