TCONS_00068373 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068373
Unique NameTCONS_00068373
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1959

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068373 ID=TCONS_00068373|Name=TCONS_00068373|organism=Clytia hemisphaerica|type=transcript|length=1959bp
AAATCTTTTGAAGGTGGTGTAACATTTGTTAGATTTTATGCGAGAGAGGG
GACGCAGAAAATTTTAGGCGGTTGCGCCATTGAACGAAGAGTTTAACATT
TAACACAGTTAAAATATccTTATAAGGAGATGGTGACAACGGACCAATCA
AGATCGAATTCACCGGCCCATCATCATAGATCGATTGGCGAGAGGCGTGG
TGAAAAAAGAATGGATGAGCACGCCATCATTACGCGCTTGTTTGCCGATG
GTCGTTGTCTATGGCCTTCTTGTAATACCTCGTGTATGGATAAACACGAT
TTTGTAAGACACTTAGATACAACCCATGCAATGGACGAAAAAGCAGCAGC
TCAGGCTAGAGTTCAGAAATATGCCGTCGAAGAGTTGGAGGAAAGGTTAT
CATATGAACGTTCAAGGCTGTCAGCCATGTTGGCACATTTGGAATACGCT
TCTGATAAAGGGTACGTTCTGCACAAGTCGGCTCATTCGGCTTCTCCACC
ACCTCGATCAGGATCCGGACACCATCACCCAGTCAGTAACGGAGGTGTGG
TCTACCTACCCTACCCGCCACCGCCACACCATATCCACGCCATCCCCACC
CACGTACCCGATGATCGTGTCAGTTCACCTCATCACCGTGAAAGAGAAAG
AGAGCGTGAGAGAGAACCACGATCTCCACCTCAATCGAACTCGCCACGAA
AACATTCTCACCATAAACCAGCCCCTGGCGGTCATTACCACTTACCGGCT
CCACACTATTACCCAGTCCATCCAGCTTATCCAATCGGACGGCCCGTAGC
TTTAAAACGCGAATCGCCTGGAGACGAAAAAAGCCCTAAAGATGAGAGAT
ACCCACCGCCCGGATTGATTGCCGCCCACCCAGAGGAATTAATACATCGA
CCAGCTATTGAGGCATCAGCACACCCACCAGGTCCACCATTAACGCCCAA
ACAAGAAGGCGGATACCACCCTGTAAGGCGTCGTGGTGAGGCGGCAGCTA
TGGTTGACATTGGGCATGGTAAGGAAGACATAGGTTATCAACTTCGCACA
AAGGGTAATCTATACCAAGACCCAAACATCAGGCCACCTTACACGTATGC
CTCACTTATTCGACAAGGTGTTTTAGACTCACCTAATGGAGAATTGACTT
TAAACGAAATTTACAACTGGTTTATCAAAAACTTCGCTTTCTTCAGAAAG
AACACTAGCACTTGGAAGAATGCCGTTCGACACAACTTATCGCTACACAA
ATGTTTTGTTCGAAAAGAAAATCACAAAGGAGCTGTATGGACGGTCGATG
ATGTTGAATTCTTCAGGAGAAGAATGACAAAACCAGGACTACCACGAAGA
GAATATTACGCGCCCGAAGAACGCCCCAATTCTCCACCCGAAAGTGGTGG
TGAATATGTGACGGATCTTCCATCTATGGCCATGTCAAGAAAGGAAGATT
CAGAAGAAGATAATTCACCGCCACCTCCGCCCACGCAACAACATCACGCT
CACGAAGAAAACGGTGAACAAGAAAATTCGATGGCAATCAAAGAAGAACG
AGAAGAATACCTCCAGCATGCaGATACAGTGATGGTGACATCTTGAGAGT
TTCAACAGTGTTGCAGTAACAATTATGGAGACTGACAGTTGGAGTTGGTA
GTACTTGACAATGAATTCAACTTCGAGACCCCTTTTTTGGAAGTTCGTTA
CTTAAATTTAGTACTAGCCCATGTTGTATGTTATTTTctaataatattta
ttttatggACTTTAGAGGATATAAATTTATCTCCTCGAATTTCTCGACAA
TCTCTCGAACttgaaaactattttctttttagcatAGAACTTTTTTAAGT
GGGGCAAAAATTTCTGTAGAACCTGTAGAAATCTCAATTTTCAAGAGATA
CCTTTTTTTGTTACAGTAATCCTccttttaaaaacctttgtttagtatat
tttgtttta
Run BLAST on NCBI

transcript from alignment at scaffold_483:77882..94220-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068373 ID=TCONS_00068373|Name=TCONS_00068373|organism=Clytia hemisphaerica|type=transcript|length=16339bp|location=Sequence derived from alignment at scaffold_483:77882..94220- (Clytia hemisphaerica)
AAATCTTTTGAAGGTGGTGTAACATTTGTTAGATTTTATGCGAGAGAGGG
GACGCAGAAAATTTTAGGCGGTTGCGCCATTGAACGAAGAGTTTAACATT
TAACACAGTTAAAATATGTAAGAATTTATTCTGTTGTTCTTTCTATGTTT
TTCTCACTGCTTTATTTAACTCTTTTTTTTATCAGAAACAGTAATTTTAG
TTATGGGCCTATTTGTGGTCAAAAAGGTGTTTAATTTTGCATAAATTGAT
GCAGATTGTGGGGAAATTCTCTCTTTTCCATCAGTTTTTCACCACAAATA
GGCCAATAAATTTTGATCTAGAGAAGTTGGGACTTTGGTGTAATACTCTT
TTTTGCTCAGTTTGAAGAGCTTTATCATGTGATATAGGTTTTTTTTTAAT
TTGAAGACCCCCCAAAAATTATGAAATTCCAGGCCTTGCAATTTTGCCTG
GAAACGCAAAAAATCGCCAATTAGTCGTTACTTGCACGATAATATCGTGG
AAACTTTTTTGATTTGTAATCTACACATACTAATTCGCGAGTTTCCGTTG
TTTTTTTTTTTGGAATCTAAAAGATGTATCACGAAATGAAACGTTTTTCG
ACCTCAGCCGCGCGACTATTTCGAGGGTAACTAAGAGTATACTTGGTTTT
ATTTGATGATTTCATCAAAAACTTATAACCTGAGAACCACTTAATCAAAT
TTAAAAAGTTATGCACCAAATTTTAACGTTGCCTTTTCTCTTTTCGAATA
CATTTATTCGTCGAACCCTTATGTTTTTTTCTGGGTCACTCGGTATATCA
CAAATTGGGCTAAAACAGTGATCATTTGCTTGTATTTTGTACATAATCGA
AAAAATCATAATCATAATCTTTTATTGTGGACTTTTTGGTTCTCGAAATT
GTTTACAAAACTTTTTTAAACCGTACATCATGTGCCCAAGTTCAGGAGTT
GCCATAAAGCTATTATGGTAATAACCGGGAGGGCACATTGCTATACATTG
TAAAATTTATTTAAATGAAGCTATTGAAAAGCTTTTGCCATACACGTTTT
TTTTTTTATAAGAACGTCAACAATTTTCGAAGCCTTCGGATTTTCTTAGT
TTTTTGGATTTGAAGCCTAAAAATGTTCTTAAAATGTTCTTATTTTCAGC
ATTTTTTGAGCATTTTGATGTAATTTCANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCAAAG
CCTTAGAATGTTCTTAGAATGTTCTTAAATTTTTGGGCCTCGAAGCCTTA
TGTTCTTATATAGTTTGTTCTTATAAAAAAAAACGTGTATATAGTTTTCG
TACCTGTTCGTACGTCATAAAGCATACAGGGGGTCATGCAGTTGGTTTTG
AGAAAAGATTTTTGGGAATTTTCATTATGCAGGAAATCGGCTAGGTGTAT
CGCGTGTTTATTTGATTCATTGGGTTCTAATCACGTTGCGAAGAATTGAA
AAGAATATACTGCTTTGAGATGTTTTTTGGTCTTAATTATCGAAAAGTAA
GTAAAGGATATTTATGAAGAATTCCGTAAAATTTGTAATACAGTACTCTC
TTTACTTGAGTTTTCTTAACTCAAACCTCTTTAACTCAAATCTCTCCTTA
CAAGCTTTTCTCGATTTTCTCATTTTTTCAGTTAACAATGCCTTATAAAC
GTTACTCTATATATTCCAAATTTTCTTAACTCGAACAGATTTGTGTTTCC
CGTGCAGATTCGAGTTACATATATAGAGACTCAAGTGTAGTATAATGTAA
AAACTTTTTCGCAGGAAGAAACTTAAAATGAGCTCAAATTAGCAAATTCG
TTTCGCGAGAACTGACTTTCGCTGATAAAGATTTTCAAGAAATCGCAATT
CGTCGACTTTTGATTGTCTTTAAAGATTGAAAATCGAATTTTTTCATATC
CATCGAGCTGAATACAGTCAAAAAATTATTTCTTTATTTACTTTGGCTTT
GGGGGAATCTTCAATATCAAGAGAGTTTTCGTTGTGGCCTGCTGACGGCT
GACGTCACATGGAGAAGGAGTGTGTTTTTGTGTCCCTCCTCTATGGAGAA
ACTTTTAAAATTCGTGTGTTGCCCTCACACCGGTGTTTTGTTTGTGTTTA
GATGTTTATTGTTTACCTCGTGTCTTAAAATCAACAAAAGAAAACCTTCT
TTTTATTTATTTCTTAATCAACAAACAACGTTAACATCAACAAATAATCA
AAGCGCGTTTTTATGCTTTTGATCATTTCTTTGTATGGCTTGATATATAT
GATGGTACGTAGTTGTTTTTGTTTTTCTTTGAAGAGGTTTTTCCGAAATA
CTTATATCTTCTTCATCTTCTTCTTAGTCTCTGTTTAAACTGTTACAACT
AGTCATAGCTTTCACTAAATGCCCCCACATAAAGATTATGTCATGCACTT
ATAAAGCTTTAATGCTTTAAAGATTAAAACATTAAAAAATAATCAGGAAT
AATTGATTGATTGATTTAATTATTGATTGATTGATTGATTGATTGATTGA
TTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGAGGCATT
TGCTTGAAAAAAAATTATATTCCATTAACAAAAATATTTGAAGAATTCGC
AGCTTGATAATTTAATAAAATTTAAGGAAAAGGTGGAAAAGCTTCTCAAA
AATATACTTCAAAAATTATGGTATCATTAGCTTACAGGTTTTCACATCTC
CTGTTTGTTTTTTTCTCCTTAGTTTCTTTCTTACAACAATATATATCGTG
ATTATTATTCACTAAATAGACCTTTTCTGATAATGCCGCAGACATTTGCC
TACATAGATTGTAGGCAAATATATAGTGGTGAATAAATCAACAAGGTAAC
CAATCAGAAATAGCTTTTTTTTTCATTGGCTGCTATATTTCAACAATTCT
CTATTGCAACTTTGCCTAATAAACAATAGTCAAGAGGATACTGCGTATGA
AATTTATAAAAAAGTTCTGCGCCATCTTAAATAGGGTGAAGTAGAAACCA
ATCCTATTTAAGGCGTACGCTGTGATTGCACTTTTCAAACAAAATCTTCT
ATTTTATTGGTCAAAAGAAAAAAAAAAAGGAATGCCATTGTGGTCCATTC
AGACGTACAGTCGAGAAAAGTTGAAATGCGCCTAAATTTTTTTTCGATCT
TTTCTCCAAGCAGCGCAGACAATGAAGAGACGTGCCTTCAGGAAGCTAGA
CTTTTTGAGTTTATAGCTATATATATTTTCGCTTTATGGTGTTTCTGTAT
GACTGTCTGTGTACCTAGTCTAACCACCGTTAAATGCCTTCGGGAAGGTC
CATCCTAACTTGGAAAGCCAGAATTGGCGCTATTTGACCAAACCACTGGA
GCGTAAGTTATTTAGGCTATCACAACTGCATGAAAAAGTTGAATGTGCGC
ATGTAAAGTTAAACGAATGTAAACAAACTTTTTGCAGGTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATG
ATGGTATTTAAAGCTCGAGAAGCTCTATAAACAATAAAGGTAGTTATTAA
TAAAATAAAAGACAAAGATAAATTAGAGTTTGAACAAAAATATCAAAATG
TACATTTGAAAACTTGAGCAAATTTCTTTAAAGATTCCGGAAAAAGAATT
GAAATCATTGATGAAGTGAACTTCTGACTAAATTACAGTAGNGTTTGATA
TATATGATGCTAGTTGTTTTTCTTGTTTTGTTTTTCTTTGAAGAGGTTTT
TTCGGAATACTTATATCTTCTTCATCTTCTTCTTAGTCTCTGTTTAAACT
GTTACAATGATCCATTTTGTACACACCCCTGTTTCATTAACTCGGTGACC
TGACGAAAAAAACCTCTTCTGTTGTTTTTAATAGCAAGTTTATGTATTTG
AGATAAATCGAAGGAGACTGTATAAAGTTAGCAAATGTAAAATATAATCA
TCTGTTTTAAAGTGAACAAAGGCGATATAGAGCCGTACACTAGTTAAATC
TACTTTGTTTTCCGTCGACTTTACTTACCGCTGTCCTCGATATCCTCGCC
AATCACAGGAATTTTGCAGTTCGATTGTGTTCAGGTGTTTTAGGATGATT
TTTATTTTCGTGGACAAGTAAAAACCTTAACAAGATAATTGTACTGGGCT
TTTGTTTACTTTCAATTCAAGACGAAATTCTCTTTGAGCGAGGCTTATGA
CCAATTTTCTTATAAATAATTATCTGACGGGTGTTTTATTTTTGTTATTA
TTTTTATTTTTATTTTCTTAATTGTTCCCAATTTACTCGACTTAATATTG
GCTTTTATAAGAACTGAGTTTTTATTGTTTCATCATATATTTTTTTTACA
AAACAGTCACTGCAATAGTTTGATAGAATATTCGAAAGATAGAGAATTTG
ATATTGGAAAAGTCCTATTTTTTTATAAGTACGTTACTAAAAAGATGCAT
CTTTCTATGATAAAATGTCCTTACAAAGAATTGTTATTTTCTTATAAAAA
AATTCACCATTAAAACAAGAACAAGTTAAAAACATTTTAAGGCTTGGGGA
ACACCCAAATTCATAGAAAAATTAAAAAATATACCAGAAAATGGTGAAAA
TAAGAACATGTTAAGAACATTTTTAGGCTTAAAACTCAAAAAGTTAAGAA
CATCCCAAGGCTTCAAAAATGTTGAGTGTTCTTATAAAAAAGCGTGTAGC
AACACACGTTTTTCAAGGCGATAAATATCGCAATTCCCAAAAGGCTGAAT
AATTTAATTACAACCCATCATTCTATTGTGCATCGAGTTTTCCTATTCGA
AAATTTTGTTTACTTCTTTTGAATTTTGTTGTCATTAAAAGTAAGCTTTA
ATATTTGTGTTGAAAGACACAGTATAGATTATATCTTGGCGAAAAGAGAA
ACTGGGTTGTTTTTTTGCATAATCGAAGAAAAAAAACGATTTTTGTTGTT
TATTTAGCAATAAAAAGAAGGTATGTAAAACACCAGTAACTATTTTCTTT
CCTATACGTTTTTATTTATGAAGCACCTATTGCAGGTTGCTCTGTTGTTG
AAAACTTCCTAAAGGCTAACCTTTGTGATTTCAAGCAGCACGATAGTAGA
AAAACAAAAGGAAAACCTGCAAGAAGTTTACGCCTTCAGATGACCCTTCA
ATTATTGTTACATTAAAATAAACATCTGGCAAACAGTATGTGTTGGTGAA
ACACAAAAAAACATTTTTTTTATGATTTGTAAAAAAAAAACTCTGTTTCT
CAAAGTAAATATGTGTGTTGAAGTCAGTTGGGCGCTTTATGTTCGCTTTT
CCTCTTTCAATCTCTTTCATTCATTGTGTTAGGATTTTTCAAAGAAACAG
TAGTAGTAACCCTTGTTGCAGTATCCGTGTGGCAGGGTTGGTGTGAGTTT
TGTTATCAGGTTTTCGTGGAAGCAACGTTTATGATGACCAAACTATAAGG
ATAGGTAATTTGTCTCAAGATTTTTAAATTTTTTATTTCTATACCTTCAA
CTAATCGGCGGCGTTGACAGAGGTTCGCCACTAAAATGCGACAAATCCTC
CATGAGACTCCTAGACTGGAGTCGTTTATAATTTGTGTAATACAGTAGTA
TAAGCATTATATGATAATACGATTATTGTTACGGGATTTAGTTTGTATAA
AACTAAAATTTGCTCCCTCCATTACTTTTTTCTACTATGTCTAAATTAGT
CGTCTAGCTTACTCCCGTTAAATTCAATCCTGGTTTACATACCGCCTTTC
CTTATCATTAGGAGTTTTTGCCTAATTTACTTGTTCTATCTTTCGAGTGA
CCTTACTAATGTAACATTTTTAAAACCGATTCTAAATTCTACTTTTAATT
GGCTTTTCTTAGGCGTATTCTTACATTTTGAGGAAGGCTTCTTTTTTTCC
GTACTTTATAGGCCTTTGACAACAAGGCGTTCTAATACTTCGATTCTTAA
GCTCAGAACAGCAAACTAAGGTTGTCTCATATTGAAAGTGTTTTGTTCAG
AGTAAACATCCTATCGGAATTTAAATTCCCTGTGTTTAGCTCCTTGCATA
AAATATTAGATTTAACTTTTTTTTTACTGTTTTGATCTAAAAGCTGCAAA
GCCGTTTGGAGATTTAAAGTCACTTGGTACTGTTGAATATAGACCTTTAG
GAATGACATATGTCGATAGTATTTTTACCCGAATTAAAGAGCTTGATTTC
TAAAAAAATACCTAGGCCTAGTTATTGAAAAAATGATCACTGCCTAAATT
TTAGCGTTCGTCATTTATTGGATATTCTTATAAAAAGAAGTTGACGGCCT
AAGGGAAGCAATAGCAGTGAAACTATGTATTATGACGCGGTCTCAATTTC
AAAACAAACAAATAGAGATGTTTATGAAAGCTTTTCCAAACGAGACCTTT
TCACCTTCCAAGACATGTCAATGAAATCTTACTGTTTTCAAATTGAAACC
AGCACCTTATGTTGATTCGCTACATGGTTTCTATTAACTAGAAAGAGAAA
TTGTAAATGCAGCGCTGAGGGAAATAATCTGTGACCTTGCCTCGAGTTTT
TGGTAACACGTATGGCTCGTGCTTTTCAACCATCTACCCTGGCACTTTTC
TAGCACCCTTGGGATATCCTTATTGCCCTCTTGTTAGTTAGCCTTTTTAA
AAGAACCGCTAAAAATTTTTCAAATTTTGACATTTTAAGAGCTTTTAAAC
CTCAAACTTTTCCAGGCTCAGACCTCAATGTTCTTCTTAAATTGTTCTTA
TCTTTTTGTCCGTTCTCATAAAAAAGGGTATCTGGTAGATCATTCAGAAT
TTTTAATTCTAAATGTCAGCGTGAGAACCGGGTCATTCATTCGTATGAAA
CGTGGTTTCTACANTTTTAATTCAAAATGTCAGCGTGAGAACCAGGTCAT
TCATTCGTATGAAGCGTGGTTTCTACGCAGGAACTGGATACGGCCTTTAG
TGGTGAGAGTTCGTGTTTTTAGAAATACAATTTTCACTGTTTATGGGTAA
ATAAATAAAAATAGAGTAAAAAAAGATGTCATTAACTGAAAAAAGTTTTT
CTTATATCACCTTACACTGAGCTCTTTCTTTCATTCATAAGAACAAATTG
TCTGTTCTGATTATTCCAGATACTTATTTTGAACTCAGCTTATAAGTTCT
TTTGTATTGAAAATGATGTTCCAAAGACTGGCGCAACCCGATTCTAGAAA
TTGTTCCGAAGAATAATCGAAAGTTAATAAGATAAGTGCCTTTGAATGAA
AATCGGTTCTTCAGTTTTTTTTGAGAATTCTTATAAAATAATTTAAGAAA
TTTTGAAAAAGATTTTTTTTGTACAACATTGTTAGTGTTTATAAGGTCAC
ATTGTAAAATCAACATTATCATGCTTTAAAGAAAATAAAAATGGTGACGA
TGATGGGCAATGATATAAAAATGTTTATCATAAATTATAAATTTTTCTCT
CGAATGCAACGTAATGTTTCTGATCTTGGATTCGTTCATTTAAGATTCTA
TTAATCTAGCTAACTTTTCTTTCAATTTTCGTCATTTTTGGCCTGGTCAC
GAAGTTTTAATCTTCTTTTGTTTCGACATAGCTCTGATGGTTCTTTTTTT
CCAACCTTTTAATAGTTAAATATCTTTCTTTTAAATGCCACAGGCGTTTT
TCTGTCGTGCTTGGAAAATATTTCCAAAAGTAATTGGTTGGGTGAGTATG
ATAAAAAATTGGCGTGTAGACGCTTCTTATTAAGTACCTGAATGTTACAG
TCAATGTTTCAAGGTAGATTATGGATGATGAATTCCTGCCTCATCTTTTC
ATCGAGGACCAACCCTTCCATTAGTTCGAATTATAGGAAAGATTCGAGAG
AAGTTCTGACAAGAGAAGACTGCCTGTATAGTACAGTTTACTCTCGCTAA
TTTGAATTCGAACTGGGAATCTTATTTATTCGAATTATAGAAATTATTTT
AAGAGGGTTTCTCCTTGACGGATACTGTAAAAAGCTCGATTTATAGAAAG
ATCTACTAAATATAGAAGTTCGAACTAGAGAAGGCTGACCGAAAAAATGG
GTAAAAGATATCTTTCAAAAAATGATGTTGTTGATGATAGGTTATAATAA
TGATGACAAAGTTTATGAAATTTTATTTGTTTGTTTTCTCGTCAATAATA
AAAACGAACTTGTGTCAAAATAAGAAAATTACAGTACGGTTTTGTTGTTG
TGATGTAGTTCAAAAAAACTCATAAGCCTCTTAGTGTGTGTGTTTACATG
TCTATTTGATGAAGGGCTTAAAGTCAATCCTTTTTTTGTGTTTCTATTGG
TCATAAAAAACCACAATTGTGGTTTTGGATTATGGAGATTTATTGATTTG
TTGTTTTTGAATCGTACCAGGAATAATGATGGTTTTGTAAGACCCTCCTC
TTGAAATAATGACTTGTTTGCGTTTTGATTTTTAACCATGTTTGCAAGTG
ATGTAAGGTTTTAAGTGTGTGTTGCTGGATCTAGACAGCTAAATCTTCTT
GCAACCACTTTTTTTAACTTATGTACTATGTGTGCCAGTTGCCAGTTGTT
TTCATATAAAGTCACTAAATTTGTTTCGACGTTTGAAAATTTAGTAGCCC
CATCTGCTTGTCTTCATATCAAGACACTCGCCGTTTGAAAATAGCGAGTT
TATATACTTGCGTATTCGAGGACGGTAAAGTGACTGAAGCGATTTGGAAA
AACCCGCACTTCTGACTCGCAAAATCAAGGACGGTAAAAGTGCTGATTTA
CCGTCGTCCTCGGCTGGTCAGGATCTAGTCAAATCAGAACCTTATCGTCT
CCGTCGTAGAAAAACACACATAAATAAACTCGATACATTCCTCTTACTAT
TACTTGCTTCACTTATACGAAACAGGAACTAAAATGCTCTTCCTGCGCTT
TTTTCTTTGGAATTCGTAGAAAATGTTTCAAGTTCTTGACGCCTCTTCTG
AAAGAAATAAATATACTTGCACTGTTGACTATAAAAAGCCACAATTAAGA
TTAATTTGACTGGATTATGATTGGAATTTAACTTTGATTTTGATAATTCA
ACCATTCTTTTAAATTCATCCTAATTCCTCTTCCAACAGAATAGTAATGA
AAATTGATAGAAACACAGATTTCTTAGAATTATCAACGAAAAACGTTACG
GCAGACGAGGACCCAGAGAGCGGCGCCATTTTGAAAAAGGCGTCATTTAT
GGACCTAGAAAATTCATCACCCATTAATACAAACAACGGTGAACCACCAC
ACAAGAAAGGGCGGAACAACATCCTAAATAACAACGAGGTTTTAACGCCC
GTTGAAACCACCCAACACGCCCCAAATTACCGTGTTGACATGAAATTGAA
AAGTCCGAGCCCGACTGAGGATGATTATATAAAATCAGATAAAGTGCACA
CGCATCACGGTCGTGTTACGCACTATTATCGCGATGAACCGAAACATGAC
ATGCTTCTCGCTGTCAAGGTAACTGCAACGGCAAAATTCATTCAAAATAC
ACCTATTGACATTTTTGCTTAAAAGCTTCGTGAATTTAGGGTTGGGTTCG
AGTTTGCCATGCTCGATTGTCGTCAGATGCTTGAATATCTGCATTAACAT
TCTCGCAGATACTAATATTTGACTGTCATCTAAACCTCGTAAACCCGATT
AACGATCCCTTGTTCTCGAAGTACTGCAGGTTTATTTGAAAGAAAATTCC
GGCGAACGATCTTCTAAAAGTCCCTAACTTATTCTAGACGTTTATCTTTT
TTTCTCGTACGGTAACACATAGTTTGGTTTTTACTCGCTAGTAGCAAACC
CTGTGCGACAAGTTACACTTTTCTGTAACCCGAAATTGTCTGCTTCATAT
TGATTTTAATAATTTATTTTTTTTATTCAGCCTTATAAGGAGATGGTGAC
AACGGACCAATCAAGATCGAATTCACCGGCCCATCATCATAGATCGATGT
ATGTATTATTAAGCATCTGACTTGGAAAGTTACCCTCGGGCTTTGTTTTT
TAAGATTTTGCCTTCCTTTACCCTTTAGCTTTTTTGACTGTGCTAAATTT
CCACCAAAACTTTCATTTTTCTCATCTCACGTTCAATTACTTAATCTTAC
CATTGCATAACAACCCCGGGGGGGGGTGCTTAGGCAAATGGAGGGCACGG
TATGTGCCGCCCTTAAGGGTACCTTTTTTGGACTTCCAAAGTCCCGCTAA
GGGTCGGAAAAATCAGGAAATCTAATTTCAGTCCCACTAAGGGTCGGAAA
ATTGGAGAATTTCAACTTTTTACCCCCTGAAAGATCAAAATTTGGTCAAA
TTTGGTCAAATTAATCCCGCTAAGGGTCGTGAAATTCCCAAAATTTTCCT
TTGTTTTCTCCTTTTTAGTCCCGGTAAGGGTCTAAAGTTCGAAAGTCAGC
TCGCAACCCTAGTACCCCCCGGGATAACAACTCTCTTTGTACTGGTTAGA
ACAAGCATATCATGTCAATGTCGATATATTTTTTATGATGGTGTGTAGGT
GTAACTTCTTTACCCCTGCGTGAGCCTTTTGATGTTTACTGATAGCGACA
TATAATTTTCTCTGGTGTCCATGAGTAACATGGAGTCTAGGATAAAGGGA
CAAGCTGGAGTTTTTACAAGCTCTTTCTTGATTTGGTTGGTCGTTAGCCT
GTAATAAAACAATTTTGTTACTTTTTCTAAAGAACGAGTCATCTCTATTA
TCTTAAATGACCAATTAGTGAAGTACAAAAACTATATCTTATAAAAACTC
CAGAACATCTCAGGATAAACGGGGACGAGGTTGTGTTTAGGTAGCAGGTA
GACCCTTTCTACAAAAAAAAACAGGCAAATAACTGATTCTTCTATTGGTT
TATTTTAGTGGCGAGAGGCGTGGTGAAAAAAGAATGGATGAGCACGCCAG
TAAGTTACATTCCATACAAGTACTTGGTTCTTGCTATTGCACGCCAATTA
TCTATACAAAACCTAGAGATAACAAAAGTAAAAAAGTGAATACTTTGTAT
AATTTACTAACTCCCACTCTCAGAGTAAGACCTATAGATGCTTATTGTCC
ATGTAAAGTGTATTTTTTCTATTTTATACTACCGTTGACGCTCTCTTATT
CGACGTTGTACTATTCGATAGGCTCCCTTATTCGATGAAATTTAAATTCT
CCGTCAATAAGAAACTCTCATAAACGACGTTCTACTATTCGATAAGCTCC
CTTATTCGATGAAAATCCGATTCCCCTTGAAGATCGAATTAGAGAGCGTC
AACTGTATATCCTAACTTATTTTCACTTTTCTAGTCATTACGCGCTTGTT
TGCCGATGGTCGTTGTCTATGGCCTTCTTGTAATACCTCGTGTATGGATA
AACACGATTTTGTAAGGTAAGCAAATCTAAAGAACGATAACAATTATTAA
TGAAAGTTTTTTGTTTCCTTTTCTATGAATTAGGAATTGTATCATCTTTT
ATCATATTAACACTATATTTTTCTGGATACTCATCTAACACAATCAAATT
CCATAGGGTAATCACTTTTTTTGTCATGTTTTCGCCTTTAATTTTGAATG
AGATTCTATTTGGTAACTTAAAAAATGGTTACTAACGATTGAGTTAATCG
AAATTCAGTACTCATCCACACCTGAAAATTGCAGTTGTTATTATCCATTG
GAACTTGATTTTTACCAAATTTTCCCATGTTGACAGTCGTTACATGGAAT
TAAACGAAATAAAGAGATTTTTACAACCGATGAACGTTTTCCTTTACGAT
TTAGACACTTAGATACAACCCATGCAATGGACGAAAAAGCAGCAGCTCAG
GCTAGAGTTCAGAAATATGCCGTCGAAGAGTTGGAGGAAAGGGTAAGATG
TTTTTAGTTTATCATCTTAGTATCTTAGACCATAAAAGGTTTCATGTTTA
CAACTTTTTGTCTTATGCTTAACTTGAAACTTCATTCAATTGGAGATGTT
TTCTCCAATTGAGTATGTATTGATTGCTTTTACTTTCCAAAAGAGGACTC
AGGGTAATGTAGAATAGATTTTATAAAGGCTTCTTTCATTCTTCCTTTTT
AGTTATCATATGAACGTTCAAGGCTGTCAGCCATGTTGGCACATTTGGAA
TACGCTTCTGATAAAGGGTACGTTCTGCACAAGTCGGCTCATTCGGCTTC
TCCACCACCTCGATCAGGATCCGGACACCATCACCCAGTCAGTAACGGAG
GTGTGGTCTACCTACCCTACCCGCCACCGCCACACCATATCCACGCCATC
CCCACCCACGTACCCGATGATCGTGTCAGTTCACCTCATCACCGTGAAAG
AGAAAGAGAGCGTGAGAGAGAACCACGATCTCCACCTCAATCGAACTCGC
CACGAAAACATTCTCACCATAAACCAGCCCCTGGCGGTCATTACCACTTA
CCGGCTCCACACTATTACCCAGTCCATCCAGCTTATCCAATCGGACGGCC
CGTAGCTTTAAAACGCGAATCGCCTGGAGACGAAAAAAGCCCTAAAGATG
AGAGATACCCACCGCCCGGATTGATTGCCGCCCACCCAGAGGAATTAATA
CATCGACCAGCTATTGAGGCATCAGCACACCCACCAGGTCCACCATTAAC
GCCCAAACAAGAAGGCGGATACCACCCTGTAAGGCGTCGTGGTGAGGCGG
CAGCTATGGTTGACATTGGGCATGGTAAGGAAGACATAGGTTATCGTGAG
TTGACGTTCTTCTCTTCTAATTTTTAACTCAGACCCCTTTTTTTAGAAGT
TTCGTAAAATGAGGTTTTTCAAATTTTTTATATAAAACGATTCTCAAGTT
TAAATTTTTTTTACAAAGTCACAGTGACTCTATTTCGAGTTTTGTATTCT
ATTTGCAAGTTCGATTTTAATTAGTCTCGTTATGCCGTAACATTTCAGTA
TCATTTAGAATTATGACCCTCTTCAATTCGTTCAAATACTAAAGATTAAC
TTTTTCCCCCTTTTTTCACTATCCAGAACTTCGCACAAAGGGTAATCTAT
ACCAAGACCCAAACATCAGGCCACCTTACACGTATGCCTCACTTATTCGA
CAAGGTGTTTTAGACTCACCTAATGGAGAATTGACTTTAAACGAAATTTA
CAACTGGTTTATCAAAAACTTCGCTTTCTTCAGAAAGAACACTAGCACTT
GGAAGGTTGGTTTGAGTATTCATTTTTACGGTACAGGGAAGGAGGAACTA
TCTTTTAAGGTTCAGAGATAAAATTTGCATGCTAAGAAATGGAGAAAATC
TACAGTAGCCTCTCGCGTATTCGAACTCCTATAATTCGAATCCTTCTACC
ATTCAAACTAATTCTCAGCTCCCACCAAGGGAAACCCTCATAAACACTTT
CTCTAGTTAGTGAATCTCTCTGTAATCTGAACAAAGAATTAATTGGGCTC
TTAACTGTAAGATTTTTCATGGTATCATATATTTGACCGTATTATAAAAA
TTCTATTGTATAGAATGCCGTTCGACACAACTTATCGCTACACAAATGTT
TTGTTCGAAAAGAAAATCACAAAGGAGCTGTATGGACGGTCGATGATGTT
GAATTCTTCAGGAGAAGAATGACAAAACCAGGACTGTAAGTTCAATTTGA
AATCAATAACGAACCAGGGGGTTCAGGGTTTCTTTTTAAACTTGTCACGT
TTGTCCAAAAATTGTTTAAGGAAGGGAAGCTTGTTTGTAAGCCGATTCAC
CACCAAAGACAACTTAAAATAATTTTTCAAAATTCATTCTGATTCAGACC
ACGAAGAGAATATTACGCGCCCGAAGAACGCCCCAATTCTCCACCCGAAA
GTGGTGGTGAATATGTGACGGATCTTCCATCTATGGCCATGTCAAGAAAG
GAAGATTCAGAAGAAGATAATTCACCGCCACCTCCGCCCACGCAACAACA
TCACGCTCACGAAGAAAACGGTGAACAGTAAGTACAACCTGTAATTTGTC
ACACGCTTTTGCATTAGAAGTTTGCGAAACTTGAGCCTTTTGAGTTCACA
ATTTTTTCGATCTTACTTTCCAACCAGTTCTACAATTGTTTGCAATGGTT
TATGCCTAGTCCTTTAGTATTCTTGAAACTTGACAGATCAAAATCTTGAC
AGGGGTCTATGAAATTAGCTCGTTTTATAGATTTTATTTCAAACATTCCG
TCTTCGATAATGCTATTTATACCCATAATGCATCGTATAGAGAAAATAAG
AACTGCAGTGGATTGTAGATTTCGTTTCAATAATACATCACAGAATTTAC
TAGATTAAAGCACGTGTTGAAATGATTGTTTCTCGTTTTTGTTTACAGAG
AAAATTCGATGGCAATCAAAGAAGAACGAGAAGAATACCTCCAGCATGCG
TAAGTCTACTTTGACCTTCCTTTTTATATATCAGAAATCCACCATTATGG
ATTAAAGCAACCGATTCGAAGAGATGATTGGTTAAGCGAATCGAATGTCT
TCCATAATAGTGGGGGTTAAGGGTTAGGGTTTACTGAAAACCACTACACG
TTTTTTTTTTTATTAGAACCTAGTTTACAAGAACATATAGGCTGAAATTC
GTCGAAAAATTAAGAACATCTTAAGAACATGCCCAGCCTCCGTTTGGAAA
AAAATGACAAGAAACTACAATTTCTTCCTCTTTTTAAGCAGTTTTTAACC
GAATTTAGGGGTGGATCTTCAAAAGTCGAGTGTCAAATATTGTCTAAATT
TTGCTAAATTTAAGTGCTCTTTATTTTGTATCATATTGTCGATTTACAGT
AGTCTGAAAAATTAATAACGCATTTAAGAACATTTTAGGCTGAAAATTGC
TAAAAAAATAAGCACATCAGAGCTCGAACCGGTGATGGATTCCGGTCAAA
GACAATCCTATTATTAAGAATTTTCTGTAGACTGGTTGCTGTAGAAATCT
TTTCAATAATACTGTGTAATTATAGATTCTGAGCGGGACTACTTCCTGAA
AATCAACATTTTGAGAGCAGTGGCGTTGTGGGAAAATTTTTCTGGAGGGG
CCAAAGTCAATTTTTTTTAAATGGCGCCCCCCCCCCTCCAATTTTTCAAA
GTGGTGTCCCCACCCATCATTTTCTAAACTTTTACCAAATTCATTTGCCT
AGGCATAATGAGGAAGGAAATATTTAGTGGAGAAAAGTAGATTTATCTTT
GATGAATGGAAAAGGGAAAAACAGGCCCCACCATGGTTGGGGCCGACTAG
AAAATATTTTTAAATCAACTGCCAAGATACCCTAAATCACTAAATAAAAA
TAGACAAATTTTACACTTGCTAGAGTGAAATGAAACTTAAAGAAACAATG
TGTTATGCGAGCGAAGCGAGCGAAAAAATAGATGTTTTATGATTTCAATA
TTGTTGTCAGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATATTGTTGTCAGCAGAT
TGGTCTTGGGACGCAGTTAGCTTTACATTTAATAATGCTATATTGTACAC
AAAAAAAACTTGTAAATTAGCTAGATATCAAAAAAGTTACCACTTAACTG
TATTGCGAGCGAAGCGAGCGAAAAAAATTGCAATTATATTTANNGGGGGG
GGCCATGGCCCCCCCGGCCCCCCCTGCCACAACGCCACTGTTTGAGAGGT
ATTAATCTCGGGATATTTCCCAGATTTCAGGATTTTTCCTCTTTGTAACC
CTCAGAGGGCGACTGAAATTAATACTATTATTCTTTTTTTTTTCTTTACA
GAGATACAGTGATGGTGACATCTTGAGAGTTTCAACAGTGTTGCAGTAAC
AATTATGGAGACTGACAGTTGGAGTTGGTAGTACTTGACAATGAATTCAA
CTTCGAGACCCCTTTTTTGGAAGTTCGTTACTTAAATTTAGTACTAGCCC
ATGTTGTATGTTATTTTCTAATAATATTTATTTTATGGACTTTAGAGGAT
ATAAATTTATCTCCTCGAATTTCTCGACAATCTCTCGAACTTGAAAACTA
TTTTCTTTTTAGCATAGAACTTTTTTAAGTGGGGCAAAAATTTCTGTAGA
ACCTGTAGAAATCTCAATTTTCAAGAGATACCTTTTTTTGTTACAGTAAT
CCTCCTTTTAAAAACCTTTGTTTAGTATATTTTGTTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042667XLOC_042667Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068373-exon-scaffold_483-1575043694:94104..94220TCONS_00068373-exon-scaffold_483-1575043694:94104..94220Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1575043694:84123..84190TCONS_00068373-exon-scaffold_483-1575043694:84123..84190Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1575043694:83172..83212TCONS_00068373-exon-scaffold_483-1575043694:83172..83212Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1575043694:82705..82786TCONS_00068373-exon-scaffold_483-1575043694:82705..82786Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1575043694:82229..82316TCONS_00068373-exon-scaffold_483-1575043694:82229..82316Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1575043694:81376..82018TCONS_00068373-exon-scaffold_483-1575043694:81376..82018Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1575043694:80916..81094TCONS_00068373-exon-scaffold_483-1575043694:80916..81094Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1575043694:80486..80607TCONS_00068373-exon-scaffold_483-1575043694:80486..80607Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1575043694:80144..80323TCONS_00068373-exon-scaffold_483-1575043694:80144..80323Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1575043694:79722..79772TCONS_00068373-exon-scaffold_483-1575043694:79722..79772Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1575043694:77882..78269TCONS_00068373-exon-scaffold_483-1575043694:77882..78269Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1510915933:94104..94220TCONS_00068373-exon-scaffold_483-1510915933:94104..94220Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1510915933:84123..84190TCONS_00068373-exon-scaffold_483-1510915933:84123..84190Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1510915933:83172..83212TCONS_00068373-exon-scaffold_483-1510915933:83172..83212Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1510915933:82705..82786TCONS_00068373-exon-scaffold_483-1510915933:82705..82786Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1510915933:82229..82316TCONS_00068373-exon-scaffold_483-1510915933:82229..82316Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1510915933:81376..82018TCONS_00068373-exon-scaffold_483-1510915933:81376..82018Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1510915933:80916..81094TCONS_00068373-exon-scaffold_483-1510915933:80916..81094Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1510915933:80486..80607TCONS_00068373-exon-scaffold_483-1510915933:80486..80607Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1510915933:80144..80323TCONS_00068373-exon-scaffold_483-1510915933:80144..80323Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1510915933:79722..79772TCONS_00068373-exon-scaffold_483-1510915933:79722..79772Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1510915933:77882..78269TCONS_00068373-exon-scaffold_483-1510915933:77882..78269Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1491911889:94104..94220TCONS_00068373-exon-scaffold_483-1491911889:94104..94220Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1491911889:84123..84190TCONS_00068373-exon-scaffold_483-1491911889:84123..84190Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1491911889:83172..83212TCONS_00068373-exon-scaffold_483-1491911889:83172..83212Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1491911889:82705..82786TCONS_00068373-exon-scaffold_483-1491911889:82705..82786Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1491911889:82229..82316TCONS_00068373-exon-scaffold_483-1491911889:82229..82316Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1491911889:81376..82018TCONS_00068373-exon-scaffold_483-1491911889:81376..82018Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1491911889:80916..81094TCONS_00068373-exon-scaffold_483-1491911889:80916..81094Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1491911889:80486..80607TCONS_00068373-exon-scaffold_483-1491911889:80486..80607Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1491911889:80144..80323TCONS_00068373-exon-scaffold_483-1491911889:80144..80323Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1491911889:79722..79772TCONS_00068373-exon-scaffold_483-1491911889:79722..79772Clytia hemisphaericaexon
TCONS_00068373-exon-scaffold_483-1491911889:77882..78269TCONS_00068373-exon-scaffold_483-1491911889:77882..78269Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_483supercontigscaffold_483:77882..94220 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.77324	0.022886	0.000670751	5.95565e-09	0	0	0	0	0.751869	1.56313	1.70757	2.0209	0.836089	0	3.60057	1.86525	0	3.58698	0.569266	0.737006	2.5542	5.33685	0	0	0	1.15074
Blast
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BLAST of TCONS_00068373 vs. Swiss-Prot (Human)
Match: FOXP4 (Forkhead box protein P4 OS=Homo sapiens GN=FOXP4 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 4.441e-40
Identity = 80/158 (50.63%), Postives = 101/158 (63.92%), Query Frame = 1 
Query:  874 AHPEELIHRPAIEASAHPPGPPLTPKQEG-----GYHPVRRRGEAAAMVDIGHGKEDIGYQLRTKGNLYQDPNIRPPYTYASLIRQGVLDSPNGELTLNEIYNWFIKNFAFFRKNTSTWKNAVRHNLSLHKCFVRKENHKGAVWTVDDVEFFRRRMTK 1332
            + P+ L+H P    SA  P  PL P   G     G  P RRR               I  +L      Y++ ++RPP+TYASLIRQ +L++P+ +LTLNEIYNWF + FA+FR+NT+TWKNAVRHNLSLHKCFVR EN KGAVWTVD+ E+ +RR  K
Sbjct:  403 SFPDGLVHPPT---SAAAPVTPLRPPGLGSASLHGGGPARRRSSDKFC-------SPISSELAQNHEFYKNADVRPPFTYASLIRQAILETPDRQLTLNEIYNWFTRMFAYFRRNTATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEREYQKRRPPK 550
The following BLAST results are available for this feature:
BLAST of TCONS_00068373 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FOXP44.441e-4050.63Forkhead box protein P4 OS=Homo sapiens GN=FOXP4 P... [more]
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