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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068369 ID=TCONS_00068369|Name=TCONS_00068369|organism=Clytia hemisphaerica|type=transcript|length=2251bpRun BLAST on NCBI protein sequence of TCONS_00068369-protein >TCONS_00068369-protein ID=TCONS_00068369-protein|Name=TCONS_00068369-protein|organism=Clytia hemisphaerica|type=polypeptide|length=616bp MKIDRNTDFLELSTKNVTADEDPESGAILKKASFMDLENSSPINTNNGEPRun BLAST on NCBI transcript from alignment at scaffold_483:77882..85011- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068369 ID=TCONS_00068369|Name=TCONS_00068369|organism=Clytia hemisphaerica|type=transcript|length=7130bp|location=Sequence derived from alignment at scaffold_483:77882..85011- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_483:77882..85011- >TCONS_00068369 ID=TCONS_00068369|Name=TCONS_00068369|organism=Clytia hemisphaerica|type=CDS|length=20361bp|location=Sequence derived from alignment at scaffold_483:77882..85011- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068369 vs. Swiss-Prot (Human)
Match: FOXP4 (Forkhead box protein P4 OS=Homo sapiens GN=FOXP4 PE=1 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.160e-39 Identity = 80/158 (50.63%), Postives = 101/158 (63.92%), Query Frame = 2
Query: 1166 AHPEELIHRPAIEASAHPPGPPLTPKQEG-----GYHPVRRRGEAAAMVDIGHGKEDIGYQLRTKGNLYQDPNIRPPYTYASLIRQGVLDSPNGELTLNEIYNWFIKNFAFFRKNTSTWKNAVRHNLSLHKCFVRKENHKGAVWTVDDVEFFRRRMTK 1624
+ P+ L+H P SA P PL P G G P RRR I +L Y++ ++RPP+TYASLIRQ +L++P+ +LTLNEIYNWF + FA+FR+NT+TWKNAVRHNLSLHKCFVR EN KGAVWTVD+ E+ +RR K
Sbjct: 403 SFPDGLVHPPT---SAAAPVTPLRPPGLGSASLHGGGPARRRSSDKFC-------SPISSELAQNHEFYKNADVRPPFTYASLIRQAILETPDRQLTLNEIYNWFTRMFAYFRRNTATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEREYQKRRPPK 550 The following BLAST results are available for this feature:
BLAST of TCONS_00068369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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