TCONS_00068369-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068369-protein
Unique NameTCONS_00068369-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length616

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068369-protein ID=TCONS_00068369-protein|Name=TCONS_00068369-protein|organism=Clytia hemisphaerica|type=polypeptide|length=616bp
MKIDRNTDFLELSTKNVTADEDPESGAILKKASFMDLENSSPINTNNGEP
PHKKGRNNILNNNEVLTPVETTQHAPNYRVDMKLKSPSPTEDDYIKSDKV
HTHHGRVTHYYRDEPKHDMLLAVKPYKEMVTTDQSRSNSPAHHHRSIGER
RGEKRMDEHAIITRLFADGRCLWPSCNTSCMDKHDFVRHLDTTHAMDEKA
AAQARVQKYAVEELEERLSYERSRLSAMLAHLEYASDKGYVLHKSAHSAS
PPPRSGSGHHHPVSNGGVVYLPYPPPPHHIHAIPTHVPDDRVSSPHHRER
EREREREPRSPPQSNSPRKHSHHKPAPGGHYHLPAPHYYPVHPAYPIGRP
VALKRESPGDEKSPKDERYPPPGLIAAHPEELIHRPAIEASAHPPGPPLT
PKQEGGYHPVRRRGEAAAMVDIGHGKEDIGYQLRTKGNLYQDPNIRPPYT
YASLIRQGVLDSPNGELTLNEIYNWFIKNFAFFRKNTSTWKNAVRHNLSL
HKCFVRKENHKGAVWTVDDVEFFRRRMTKPGLPRREYYAPEERPNSPPES
GGEYVTDLPSMAMSRKEDSEEDNSPPPPPTQQHHAHEENGEQENSMAIKE
EREEYLQHADTVMVTS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042667XLOC_042667Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068369TCONS_00068369Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001766Fork_head_dom
IPR011991WHTH_DNA-bd_dom
IPR032354FOXP-CC
IPR030456TF_fork_head_CS_2
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001766Fork head domainPRINTSPR00053FORKHEADcoord: 446..459
score: 42.57
coord: 490..507
score: 57.85
coord: 467..484
score: 44.44
IPR001766Fork head domainSMARTSM00339forkneu4coord: 444..526
e-value: 1.4E-31
score: 120.9
IPR001766Fork head domainPFAMPF00250Forkheadcoord: 446..519
e-value: 2.8E-25
score: 88.3
IPR001766Fork head domainPROSITEPS50039FORK_HEAD_3coord: 446..538
score: 24.192
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 437..527
e-value: 1.9E-30
score: 104.3
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 445..522
IPR032354FOXP, coiled-coil domainPFAMPF16159FOXP-CCcoord: 165..232
e-value: 1.8E-22
score: 79.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 244..337
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 534..616
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 351..372
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..154
NoneNo IPR availableCDDcd00059FHcoord: 446..518
e-value: 2.59305E-31
score: 115.729
IPR030456Fork head domain conserved site 2PROSITEPS00658FORK_HEAD_2coord: 490..496

Blast
[Close]
BLAST of TCONS_00068369-protein vs. Swiss-Prot (Human)
Match: FOXP4 (Forkhead box protein P4 OS=Homo sapiens GN=FOXP4 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.260e-40
Identity = 79/155 (50.97%), Postives = 100/155 (64.52%), Query Frame = 0 
Query:  377 AHPEELIHRPAIEASAHPPGPPLTPKQEG-----GYHPVRRRGEAAAMVDIGHGKEDIGYQLRTKGNLYQDPNIRPPYTYASLIRQGVLDSPNGELTLNEIYNWFIKNFAFFRKNTSTWKNAVRHNLSLHKCFVRKENHKGAVWTVDDVEFFRRR 526
            + P+ L+H P    SA  P  PL P   G     G  P RRR               I  +L      Y++ ++RPP+TYASLIRQ +L++P+ +LTLNEIYNWF + FA+FR+NT+TWKNAVRHNLSLHKCFVR EN KGAVWTVD+ E+ +RR
Sbjct:  403 SFPDGLVHPPT---SAAAPVTPLRPPGLGSASLHGGGPARRRSSDKFC-------SPISSELAQNHEFYKNADVRPPFTYASLIRQAILETPDRQLTLNEIYNWFTRMFAYFRRNTATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEREYQKRR 547

HSP 2 Score: 82.4185 bits (202), Expect = 2.277e-16
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 0 
Query:  165 LFADGRCLWPSCNTSCMDKHDFVRHLDTTHAMDEKAAAQARVQKYAVEELEERLSYERSRLSAMLAHL 232
            L+  G C WP C T C D   F++HL+T HA+D+++ AQ RVQ   V++LE +L+ E  RL AM+AHL
Sbjct:  303 LYGHGECKWPGCETLCEDLGQFIKHLNTEHALDDRSTAQCRVQMQVVQQLEIQLAKESERLQAMMAHL 370
The following BLAST results are available for this feature:
BLAST of TCONS_00068369-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FOXP42.260e-4050.97Forkhead box protein P4 OS=Homo sapiens GN=FOXP4 P... [more]
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