TCONS_00068325 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068325
Unique NameTCONS_00068325
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length619

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068325 ID=TCONS_00068325|Name=TCONS_00068325|organism=Clytia hemisphaerica|type=transcript|length=619bp
AAAAGCAGAAAACAATATTTAccgaaaaactcaaaaaaaagtgtaaaaat
ggATAGTTCAAAAGAGATATCGAATGACAGTCGGTATATTGATCTTGGAT
TGCCAGCGGATAAAAAATCAATGTCTTTGTTGGACTACAAAGCAGGCAAG
AGATGGGGTTGGGTGAAGCAATGTAGAATGTTTGAAGTTGATTATGATAT
AGATATCAAGGAACGAGAAAGAGATATTCGGGATCAACCGGAAAACTGTC
CCAAAAGTGTATCAAGCTGGATGGAAGAGTATGCAGCAATTGCTGAAAAG
AAGGAATCCAACAAAGGACCATCGTTTGGTGCTAATCCAAAGAAAAGTGT
TttcgaaaaagagaaaaaggagCCAATTGTAGGCGATAAAACTGTCGCTT
TGGGAACTAAAGATGAAGTATATGCGACTGGTGATGCAGGGTTGCTTGGA
GCTGTTTTGGAAGCATATAATCATCATTGGAATCTTAAAATTTCTCCTGA
TGATTTTTGGATCCCTGTTGCAATTCGTGTTGGTAGGAAAATCAATGATA
ATGCTAAGGAGGACAAAGTTAGAGATTTCTTTGTTGATTTCGAAGgcaaa
aaagaaattgtcatTGAAN
Run BLAST on NCBI

protein sequence of TCONS_00068325-protein

>TCONS_00068325-protein ID=TCONS_00068325-protein|Name=TCONS_00068325-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
KSRKQYLPKNSKKSVKMDSSKEISNDSRYIDLGLPADKKSMSLLDYKAGK
RWGWVKQCRMFEVDYDIDIKERERDIRDQPENCPKSVSSWMEEYAAIAEK
KESNKGPSFGANPKKSVFEKEKKEPIVGDKTVALGTKDEVYATGDAGLLG
AVLEAYNHHWNLKISPDDFWIPVAIRVGRKINDNAKEDKVRDFFVDFEGK
KEIVIE
Run BLAST on NCBI

transcript from alignment at scaffold_482:166127..166745

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068325 ID=TCONS_00068325|Name=TCONS_00068325|organism=Clytia hemisphaerica|type=transcript|length=619bp|location=Sequence derived from alignment at scaffold_482:166127..166745 (Clytia hemisphaerica)
NTTCAatgacaatttcttttttgcCTTCGAAATCAACAAAGAAATCTCTA
ACTTTGTCCTCCTTAGCATTATCATTGATTTTCCTACCAACACGAATTGC
AACAGGGATCCAAAAATCATCAGGAGAAATTTTAAGATTCCAATGATGAT
TATATGCTTCCAAAACAGCTCCAAGCAACCCTGCATCACCAGTCGCATAT
ACTTCATCTTTAGTTCCCAAAGCGACAGTTTTATCGCCTACAATTGGctc
ctttttctctttttcgaaAACACTTTTCTTTGGATTAGCACCAAACGATG
GTCCTTTGTTGGATTCCTTCTTTTCAGCAATTGCTGCATACTCTTCCATC
CAGCTTGATACACTTTTGGGACAGTTTTCCGGTTGATCCCGAATATCTCT
TTCTCGTTCCTTGATATCTATATCATAATCAACTTCAAACATTCTACATT
GCTTCACCCAACCCCATCTCTTGCCTGCTTTGTAGTCCAACAAAGACATT
GATTTTTTATCCGCTGGCAATCCAAGATCAATATACCGACTGTCATTCGA
TATCTCTTTTGAACTATccatttttacacttttttttgagtttttcggTA
AATATTGTTTTCTGCTTTT

Coding sequence (CDS) from alignment at scaffold_482:166127..166745

>TCONS_00068325 ID=TCONS_00068325|Name=TCONS_00068325|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_482:166127..166745 (Clytia hemisphaerica)
TTCAatgacaatttcttttttgcCTTCGAAATCAACAAAGAAATCTCTAA
CTTTGTCCTCCTTAGCATTATCATTGATTTTCCTACCAACACGAATTGCA
ACAGGGATCCAAAAATCATCAGGAGAAATTTTAAGATTCCAATGATGATT
ATATGCTTCCAAAACAGCTCCAAGCAACCCTGCATCACCAGTCGCATATA
CTTCATCTTTAGTTCCCAAAGCGACAGTTTTATCGCCTACAATTGGctcc
tttttctctttttcgaaAACACTTTTCTTTGGATTAGCACCAAACGATGG
TCCTTTGTTGGATTCCTTCTTTTCAGCAATTGCTGCATACTCTTCCATCC
AGCTTGATACACTTTTGGGACAGTTTTCCGGTTGATCCCGAATATCTCTT
TCTCGTTCCTTGATATCTATATCATAATCAACTTCAAACATTCTACATTG
CTTCACCCAACCCCATCTCTTGCCTGCTTTGTAGTCCAACAAAGACATTG
ATTTTTTATCCGCTGGCAATCCAAGATCAATATACCGACTGTCATTCGAT
ATCTCTTTTGAACTATccatttttacacttttttttgagtttttcggTAA
ATATTGTTTTCTGCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042640XLOC_042640Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068325-exon-scaffold_482-1491911889:166127..166745TCONS_00068325-exon-scaffold_482-1491911889:166127..166745Clytia hemisphaericaexon
TCONS_00068325-exon-scaffold_482-1510915933:166127..166745TCONS_00068325-exon-scaffold_482-1510915933:166127..166745Clytia hemisphaericaexon
TCONS_00068325-exon-scaffold_482-1575043694:166127..166745TCONS_00068325-exon-scaffold_482-1575043694:166127..166745Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068325-proteinTCONS_00068325-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:166127..166745 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.815742	1.26693	0.781515	1.31655	1.77484	1.67129	8.80032	9.13977	12.2333	20.1104	24.1314	6.43963	20.234	16.4579	20.2412	20.9345	6.95669	14.5168	18.7993	43.1688	4.0957	5.29778	2.48645	2.64886	3.8586	2.33512	79.6473	82.1737	10.5873	6.09809
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025533DUF4419
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068325 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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