TCONS_00068318 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068318
Unique NameTCONS_00068318
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1225

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068318 ID=TCONS_00068318|Name=TCONS_00068318|organism=Clytia hemisphaerica|type=transcript|length=1225bp
CTCAGTCTTCACCTAACTTTCACCAGTACAAACAAGCAAGACATGGGTGG
TCAAGACTTTATTGTTATCCTTTTATGTGGATTTTGTCTCAGTTTTTTTG
AAATGGACTGTGGACGAATCCTTCCATCAAAGGATCAAAAAGAGACATGG
AAAGGAGGAGATTGTACCGTGAAATGGACACTAAAGCCGTCAGCGAATGA
AAAAGCAGATTGGATCACTGTTTATCACCAAGCTGATGAAAACGAATACA
TCAAACCAATCTGGGAAGACGTCACCGGAAAAACTACATATGGACGCCAA
AAGTTTATGAAGAACCAAACCTTATCTGTGAATgtacagaaaaatgaaat
tgaaatcgTCATTGGAAACATACAAGAGTCGATGATTTTATATCTGACAG
CAGTGTTTCTAAATAAGGATGGGGAAATGAAAGATGGTCCGTTGCAATCG
AAAGTCACCATCACTATCTCGAgtggaatgaaaatcaaaaatggcACTCT
GATTAAAACATTCGACAAATTTTATCCACGATACGAAGTTTCATTTGAAA
TTAAGCCTTATGGTTTGACACCTTGGTCTGATACCAGCATATTGGATTTG
ACAACTGGTGTGTATGATCCGAGTGTTCTAAATGTGCGGTTTATATCCAA
CTCAACAACTCTATATATTTGCTCACGTGGTAGTTGGTGTTACATTGGGA
AAGAAGATCTAACGACAGAGAAATACACTCACATCGACATCAAACAATCG
AAAACACAAAATCAAACATATTTCGTTACAATCGCGACAGATGGAACAGA
GGTTTATAGGAAAGTGAACATTCACCCTGAAAACTTCACAAATGTTAAAG
TTTATCAATCAAGTCCGATGTACACCCCAGCTAAAGCCTTCAtcagaaat
ctcaaaattataaCTAAACCATGACATTTAATAAGCGCTACTCAGGAACT
TCATCATATTATTTAATACTAAATCGACGGAAAACGagctaatttctttt
ttattcatgCTATAAAACCAAAGGCTTAAAAAAGAGTGATGGTCTTTTTT
ACAATACTTTCATAATATTTTAACTGAAAATGTATACAAAGTTTCCCCAA
GAAAAGCGGACAAACTTTTATATcaagtaaaatcctcataattgatgcca
aattttatgacttgcatacttaatatttcaatctcaaaaacctATTCTAT
TatcatcttgggaattgaatataTT
Run BLAST on NCBI

transcript from alignment at scaffold_482:517634..520780-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068318 ID=TCONS_00068318|Name=TCONS_00068318|organism=Clytia hemisphaerica|type=transcript|length=3147bp|location=Sequence derived from alignment at scaffold_482:517634..520780- (Clytia hemisphaerica)
CTCAGTCTTCACCTAACTTTCACCAGTACAAACAAGCAAGACATGGGTGG
TCAAGACTTTATTGTTATCCTTTTATGTGGATTTTGTCTCAGTTTTTTTG
GTAAGTTACCTAACTATCATAACATTAAGAGACTACTTCAATGGGATAAA
TTAAATTCAAAAATTAAGTCCCCGCGAAATTTTATCCTATTAAAGTACAA
GGGTTGATTTTATCATAGTGTCCTCCCCCCCCTTTATAAAGGGGGGGGGG
AAACCAATTTTCCAATTTTGAATGACTGAGGGGGGACAGTGAAAATTTGA
ATAGTAAAGGGGGGAAAAAAAAGAGGGGGGAAAACATCGGTAGTTGGCAA
ATTTGGTGGGGGGAAGTGTGAAATCACTTCAATTTTATCTCAGCAACCAA
GGTCAGTCCACATGATATCATGTGATTAGATCATGATTGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATT
TAAAAAAATCAAGAATTTGGTGGGGGGAACAAACCCTGGAGGACACTATG
TTTTATGCAAACCCTGGCCCTAAAACTATTTCTTTGAACACAAAATGTAT
ATAATAATCCTGATGGAAAAAAAATAGAAATAAGAGGCTATTTTTTCTGA
GGAAATCATCGTCAAGGAAAACACTTATTTCTGCGCATCGACTTCAGTTT
GATAACGAACTACAAAACTGAAGACTATAGTGAGATGCAAAAGCGCCAAA
GTACAGATATACAAGTTGGCACATCATTTGAAGTCGCCAGAGTTTATTTA
ATATACTAATTCATTAATTTTTGTAAGGGAACAAAAAGCGCAAACTTAAA
TAATCAAATTATCAAAATCATTTTGTTTACTTCTATTTCACGTATCAGAA
ATGGACTGTGGACGAATCCTTCCATCAAAGGATCAAAAAGAGACATGGAA
AGGAGGAGATTGTACCGTGAAATGGACACTAAAGCCGTCAGCGAATGAAA
AAGCAGATTGGATCACTGTTTATCACCAAGCTGATGAAAACGAATACATC
AAACCAATCTGGGAAGACGTCACCGGAAAAACTACATATGGACGCCAAAA
GTTTATGAAGAACCAAACCTTATCTGTGAATGTACAGAAAAATGAAATTG
AAATCGTCATTGGAAACATACAAGAGTCGATGATTTTATATCTGACAGCA
GTGTTTCTAAATAAGGATGGGGAAATGAAAGATGGTCCGTTGCAATCGAA
AGTCACCATCACTATCTCGAGTGAGTTTCTTCTATCTTTCCTTTTGAAAG
ACGTACCTATACTGAATGAAATTCTAAATAAATACATCTTTCAAATGATG
CCGAAATTATAAGATGTGATACAAAGTTTTGGGACTTCCATTTGGGACAA
TCGACGTAATAAATTCACTTTTAGGAACTGTTGCTTCTTCAGTGAAAATA
CTACTTTAGGCGTACAAACTTTCCTGAGCAGAAACTTTCACGCTTTTCGC
GAGTTTTTACCTTTTTCGCGATGGTTCATGTCTTTAAACTTTCGCGAATA
GATCTTTTCATAAATTACGTTGCACGAACATCACTTGCCTCGTATTCAAA
CAATTAGCATGGTGATCATGTCTCTTGAGACATAAATGATTTTTTTATGA
ATAGGAAGTAGTTTTAATAAAATCCGCTGGGAGTTAATCACCATGGCAAT
AATTTCTAAACGAGGCAAGTGATGTTCGTAACGTAATTTATGGAAAGATC
TATTCGCGAAAGTTTATGCTCGCGTAAAACTCTTGTAAAAAAAGATCTAA
AAAACTTTTAACTGAGAAGAAAATGTAAAGATTGGAGCACCTTTTTAGCC
TCGTAACTGTAAGTCAAAAGATAAAGCATTTGTACTTCTAAGCCATTTTT
TTCTAATGGAAATTTTCATTTTAATACCTTGATTCGCGAATAGTTATGCC
TGCGAAAACGATTCTTCCATTAAATTTGCGAAAGTAAAAGTCGTGAATTT
CGAGATTTTTTTACCTCGCTAAAACTTCTGCTCGTGAAAGATTGTACGCC
TAAAGTAGTCGGAATCTATCTTACCAGTAAATTAACTTTCGAGACTGTAA
GCCCTTACCTCATTGAATAAAATAAAGTTTTTATTTTTTCTAAGGTGGAA
TGAAAATCAAAAATGGCACTCTGATTAAAACATTCGACAAATTTTATCCA
CGATACGAAGTTTCATTTGAAATTAAGCCTTATGGTTTGACACCTTGGTC
TGATACCAGCATATTGGATTTGACAACTGGTGTGTATGATCCGAGTGTTC
TAAATGTGCGGTTTATATCCAACTCAACAACTCTATATATTTGCTCACGT
GGTAGTTGGTGTTACATTGGGAAAGAAGATCTAACGACAGAGAAATACAC
TCACATCGACATCAAACAATCGAAAACACAAAATCAAACATATTTCGTTA
CAATCGCGACAGATGGAACAGAGGTTTATAGGAAAGTGAACATTCACCCT
GAAAACTTCACAAATGTTAAAGTTTATCAATCAAGTCCGATGTACACCCC
AGCTAAAGCCTTCATCAGAAATCTCAAAATTATAACTAAACCATGACATT
TAATAAGCGCTACTCAGGAACTTCATCATATTATTTAATACTAAATCGAC
GGAAAACGAGCTAATTTCTTTTTTATTCATGCTATAAAACCAAAGGCTTA
AAAAAGAGTGATGGTCTTTTTTACAATACTTTCATAATATTTTAACTGAA
AATGTATACAAAGTTTCCCCAAGAAAAGCGGACAAACTTTTATATCAAGT
AAAATCCTCATAATTGATGCCAAATTTTATGACTTGCATACTTAATATTT
CAATCTCAAAAACCTATTCTATTATCATCTTGGGAATTGAATATATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042634XLOC_042634Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068318-exon-scaffold_482-1575043694:520681..520780TCONS_00068318-exon-scaffold_482-1575043694:520681..520780Clytia hemisphaericaexon
TCONS_00068318-exon-scaffold_482-1575043694:519261..519632TCONS_00068318-exon-scaffold_482-1575043694:519261..519632Clytia hemisphaericaexon
TCONS_00068318-exon-scaffold_482-1575043694:517634..518386TCONS_00068318-exon-scaffold_482-1575043694:517634..518386Clytia hemisphaericaexon
TCONS_00068318-exon-scaffold_482-1510915933:520681..520780TCONS_00068318-exon-scaffold_482-1510915933:520681..520780Clytia hemisphaericaexon
TCONS_00068318-exon-scaffold_482-1510915933:519261..519632TCONS_00068318-exon-scaffold_482-1510915933:519261..519632Clytia hemisphaericaexon
TCONS_00068318-exon-scaffold_482-1510915933:517634..518386TCONS_00068318-exon-scaffold_482-1510915933:517634..518386Clytia hemisphaericaexon
TCONS_00068318-exon-scaffold_482-1491911889:520681..520780TCONS_00068318-exon-scaffold_482-1491911889:520681..520780Clytia hemisphaericaexon
TCONS_00068318-exon-scaffold_482-1491911889:519261..519632TCONS_00068318-exon-scaffold_482-1491911889:519261..519632Clytia hemisphaericaexon
TCONS_00068318-exon-scaffold_482-1491911889:517634..518386TCONS_00068318-exon-scaffold_482-1491911889:517634..518386Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:517634..520780 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.102155	0.0790742	0.309447	0	0.0744227	0	0	0	0	0.353777	0.255815	2.15205	4.87181	8.64178	3.75923	2.15388	4.95716	0.593915	0.310745	10.8825	7.10585	2.74924	2.27499	0.662833	0	0.478809	0	2.17041	1.73088
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068318 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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