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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068282 ID=TCONS_00068282|Name=TCONS_00068282|organism=Clytia hemisphaerica|type=transcript|length=5253bpRun BLAST on NCBI protein sequence of TCONS_00068282-protein >TCONS_00068282-protein ID=TCONS_00068282-protein|Name=TCONS_00068282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=820bp MEELVEKLEEIQVFPPEIILRKSSTEVKKFPPSYQTNTDKEKNMLECCENRun BLAST on NCBI transcript from alignment at scaffold_482:509150..558604+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068282 ID=TCONS_00068282|Name=TCONS_00068282|organism=Clytia hemisphaerica|type=transcript|length=49455bp|location=Sequence derived from alignment at scaffold_482:509150..558604+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_482:509150..558604+ >TCONS_00068282 ID=TCONS_00068282|Name=TCONS_00068282|organism=Clytia hemisphaerica|type=CDS|length=46797bp|location=Sequence derived from alignment at scaffold_482:509150..558604+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00068282 vs. Swiss-Prot (Human)
Match: DRC7 (Dynein regulatory complex subunit 7 OS=Homo sapiens GN=DRC7 PE=1 SV=3) HSP 1 Score: 704.901 bits (1818), Expect = 0.000e+0 Identity = 406/825 (49.21%), Postives = 557/825 (67.52%), Query Frame = 3
Query: 210 TMEELVEKLEEIQV-FPPEI-ILRKSSTEVKKFPPSYQTNTDKEKNMLECCENFKRQYKHLYRDRKPLFLSPKNECDVEKFVCTTLRPTQLKFPELNHYNGCADFVADYLNFEXXXXXXXXXXXXXXXXXXXERQQGNSFDYSNLLCSLLIGAGYDAYCVSGYASREVCLMDETRDFCPFLNSVNKVEKKDDTKKSNKYTVKPPKDLRSXXXXXXXXXXXXXXXXXXXXXXXXXAQRIAELEKPAEDKLFGLRVHSWVLVLAGKREVPEGFFIEPLTGHSKPLDYSGYLGIESIWNHRNVWVNMQDCSHGVKNLSYDLGNAEKWEFMFPSTDKPLVVIPDVNKXXXX----XXXXXXXXXXXXXXXPPSWVDRIEVSEKDFETRCPQGKKTIFYKKAKLEKYSDYLNKDGLVSRISVANDNDMKKMVEIIEVYKHRADKLVKKVHNLVTGWITEYFTEGRPQSLKEHSYKASTPGAESDRKMVFYSNARIDGLLTRNETPKELTETFIGREDLLCYRHATFKDRVKKFGPQQGNNNSRPIGKMVERFDRDESKRADENVAERSFMVSDDRINIRFHLENGRIIASTREFIKPANISLDKTSQLQFTADMTTAFDADVSAKPVKELKIYQMMVDLLYAEKKCNXXXXXXXXXXXXXXXXXLKEETSPELAVSVYDTGRNEKAKLRREELDRQQKEDEMRKREMELDYLAPFLARIGNPEKLTRNDASKVREECLGDLKQRLIDKANLIQARFEKETAELQKKQAWYQENQMNLTKEDEEDYLNFCSEAMFRIHILELRLNRHKEMAPHRYMQLDEKLRLDSRLSDV 2666
T+ +L +KL EIQ+ E+ K + ++ K P SY+TNT KE+++L+ +NF RQY HL DR PLFL P NEC+V KFV TTLRPT + +PEL +++ CA FV+D+L P+ P+ P L S TTVL+ Q+GN FD+S LLCS+LIG+GYDAYCV+GY S ++C MD TR+ CP + KK++ KYT+KPP+DL S+FE + E K ++E +E+K L EE +R+ E EK D L GLRVHSWVLVL+GKREVPE FFI+P TGHS +LGIES+WNH+N W+NMQDC + K+L +DLG+ +WE+M TDK + + + + + +E+ + ++ + D+P SWV++IE+S + FETRCP GKK I YK+AKLEK++ YLN +GLVSR++ D ++EI E Y++R D L K N T T+YF G PQ+L+ HSYK+ P E DR + FY AR+DGL+ R ETP+ +TE + GR D L YRHA+F RVKK +N RPI K+ ERF R+ +K A+E+VAER F+V+++RI +R+H I AS REF++ + K +++ T DM +F+ + K L Y+ M+ L EK ++ ESE E EI++ R +EE + L +S+YDT RNEK+K RE ++R E+ +R+ E +LDYLAPFLA++ EKLT A ++++ECL D KQRLI+KANLIQARFEKET ELQKKQ WYQENQ+ LT EDE+ YL++CS+AMFRI ILE RLNRHKE+AP +Y+ L+EKL D RL ++
Sbjct: 48 TLRDLEKKLSEIQITVSAELPAFTKDTIDISKLPISYKTNTPKEEHLLQVADNFSRQYSHLCPDRVPLFLHPLNECEVPKFVSTTLRPTLMPYPELYNWDSCAQFVSDFLTMVPLPDPLKPPSHLYSSTTVLKYQKGNCFDFSTLLCSMLIGSGYDAYCVNGYGSLDLCHMDLTREVCPLTVKPKETIKKEEKVLPKKYTIKPPRDLCSRFEQEQEVKKQQEIRAQEKKRLREEEERLMEAEKAKPDALHGLRVHSWVLVLSGKREVPENFFIDPFTGHSYSTQDEHFLGIESLWNHKNYWINMQDCWNCCKDLIFDLGDPVRWEYMLLGTDKSQLSLTEEDDSGINDEDDVENLGKEDEDKSFDMPHSWVEQIEISPEAFETRCPNGKKVIQYKRAKLEKWAPYLNSNGLVSRLTTYEDLQCTNILEIKEWYQNREDMLELKHINKTTDLKTDYFKPGHPQALRVHSYKSMQP--EMDRVIEFYETARVDGLMKREETPRTMTEYYQGRPDFLSYRHASFGPRVKKLTLSSAESNPRPIVKITERFFRNPAKPAEEDVAERVFLVAEERIQLRYHCREDHITASKREFLRRTEVD-SKGNKIIMTPDMCISFEVEPMEHTKKLLYQYEAMMHLKREEKLSRHQVWESELEVLEILKLREEEEAAHTLTISIYDTKRNEKSKEYREAMERMMHEEHLRQVETQLDYLAPFLAQLPPGEKLTCWQAVRLKDECLSDFKQRLINKANLIQARFEKETQELQKKQQWYQENQVTLTPEDEDLYLSYCSQAMFRIRILEQRLNRHKELAPLKYLALEEKLYKDPRLGEL 869 The following BLAST results are available for this feature:
BLAST of TCONS_00068282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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