TCONS_00068271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068271
Unique NameTCONS_00068271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068271 ID=TCONS_00068271|Name=TCONS_00068271|organism=Clytia hemisphaerica|type=transcript|length=452bp
ATTGAAGAAGTCGAACAAAATGACGGCAAAGTTCATCATTGAGTCGCTAA
CTCCAGAAAATATCACATCGTCAATGAAGGACCTACTCAAATTGTCTACA
ACCTCTCGCCAGAGTCTTGCCAACTCTGCTGCTAACTTGGTAAATCTTGT
CTTTACCAATGAATCGAGAATCTACTTGGAGAACGATGTTGTTTTAACTG
TGGATAACACCAGTATGAGTTACCAAGCCATTCTCAATGAATGTAACCCT
GGATATCAACTTCACTCGAATGGCATTCTTTGTGttgAATGTAGTTCTGG
ATCATTCAGTACAAATGGAAGAAAATGCAAACCCTGTCCGAAAAGTCATT
ATATGCCGAACACTGGATCAAGAAGATGTACGAGAtgtgaaaataaattg
attacATCAAAAGTTGGCAGTACAAGCTCCTATCAATGTTTTGAAGAGAT
AG
Run BLAST on NCBI

protein sequence of TCONS_00068271-protein

>TCONS_00068271-protein ID=TCONS_00068271-protein|Name=TCONS_00068271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
LKKSNKMTAKFIIESLTPENITSSMKDLLKLSTTSRQSLANSAANLVNLV
FTNESRIYLENDVVLTVDNTSMSYQAILNECNPGYQLHSNGILCVECSSG
SFSTNGRKCKPCPKSHYMPNTGSRRCTRCENKLITSKVGSTSSYQCFEEI
Run BLAST on NCBI

transcript from alignment at scaffold_482:384288..385065+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068271 ID=TCONS_00068271|Name=TCONS_00068271|organism=Clytia hemisphaerica|type=transcript|length=778bp|location=Sequence derived from alignment at scaffold_482:384288..385065+ (Clytia hemisphaerica)
ATTGAAGAAGTCGAACAAAATGACGGCAAAGTTCATCATTGAGTCGCTAA
CTCCAGAAAATATCACATCGTCAATGAAGGACCTACTCAAATTGTCTACA
ACCTCTCGCCAGAGTCTTGCCAACTCTGCTGCTAACTTGGTAAATCTTGT
CTTTACCAATGAATCGAGAATCTACTTGGAGAACGATGTTGTTTTAACTG
TGGATAACACCAGTATGAGTTACCAAGCCATTCTCAATGAATGTAACCCT
GGATATCAACTTCACTCGAATGGCATTCTTTGTGGTAAGACATGTTCATT
ATAATACCATATTCTAAGGCTCAAATATGTTCATTACCAAGTCTTTTGAC
AAACTTTTCAACAAAACAATACCGGATATATCGAGAGACATACAATACAA
ATTTAGAGAGATTCAGTAGCttgcttctaggctatattctcagcctgatT
AGAacaattttgagttttgtaCCCTTATATCCTTAGGTTTAAACCCGACA
TTCCTTTTTAGAAGTAAATtagagcacttaaaaatcatttgttgcGTTTA
AAAGGGAATtccttttttttattaaatattatgtacataataatattttt
tcaaatttagttgAATGTAGTTCTGGATCATTCAGTACAAATGGAAGAAA
ATGCAAACCCTGTCCGAAAAGTCATTATATGCCGAACACTGGATCAAGAA
GATGTACGAGAtgtgaaaataaattgattacATCAAAAGTTGGCAGTACA
AGCTCCTATCAATGTTTTGAAGAGATAG

Coding sequence (CDS) from alignment at scaffold_482:384288..385065+

>TCONS_00068271 ID=TCONS_00068271|Name=TCONS_00068271|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_482:384288..385065+ (Clytia hemisphaerica)
TTGAAGAAGTCGAACAAAATGACGGCAAAGTTCATCATTGAGTCGCTAAC
TCCAGAAAATATCACATCGTCAATGAAGGACCTACTCAAATTGTCTACAA
CCTCTCGCCAGAGTCTTGCCAACTCTGCTGCTAACTTGGTAAATCTTGTC
TTTACCAATGAATCGAGAATCTACTTGGAGAACGATGTTGTTTTAACTGT
GGATAACACCAGTATGAGTTACCAAGCCATTCTCAATGAATGTAACCCTG
GATATCAACTTCACTCGAATGGCATTCTTTGTGttgAATGTAGTTCTGGA
TCATTCAGTACAAATGGAAGAAAATGCAAACCCTGTCCGAAAAGTCATTA
TATGCCGAACACTGGATCAAGAAGATGTACGAGAtgtgaaaataaattga
ttacATCAAAAGTTGGCAGTACAAGCTCCTATCAATGTTTTGAAGAGATA
TTGAAGAAGTCGAACAAAATGACGGCAAAGTTCATCATTGAGTCGCTAAC
TCCAGAAAATATCACATCGTCAATGAAGGACCTACTCAAATTGTCTACAA
CCTCTCGCCAGAGTCTTGCCAACTCTGCTGCTAACTTGGTAAATCTTGTC
TTTACCAATGAATCGAGAATCTACTTGGAGAACGATGTTGTTTTAACTGT
GGATAACACCAGTATGAGTTACCAAGCCATTCTCAATGAATGTAACCCTG
GATATCAACTTCACTCGAATGGCATTCTTTGTGttgAATGTAGTTCTGGA
TCATTCAGTACAAATGGAAGAAAATGCAAACCCTGTCCGAAAAGTCATTA
TATGCCGAACACTGGATCAAGAAGATGTACGAGAtgtgaaaataaattga
ttacATCAAAAGTTGGCAGTACAAGCTCCTATCAATGTTTTGAAGAGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042612XLOC_042612Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068271-proteinTCONS_00068271-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068271-exon-scaffold_482-1491911889:384288..384571TCONS_00068271-exon-scaffold_482-1491911889:384288..384571Clytia hemisphaericaexon
TCONS_00068271-exon-scaffold_482-1510915933:384288..384571TCONS_00068271-exon-scaffold_482-1510915933:384288..384571Clytia hemisphaericaexon
TCONS_00068271-exon-scaffold_482-1575043694:384288..384571TCONS_00068271-exon-scaffold_482-1575043694:384288..384571Clytia hemisphaericaexon
TCONS_00068271-exon-scaffold_482-1491911889:384898..385065TCONS_00068271-exon-scaffold_482-1491911889:384898..385065Clytia hemisphaericaexon
TCONS_00068271-exon-scaffold_482-1510915933:384898..385065TCONS_00068271-exon-scaffold_482-1510915933:384898..385065Clytia hemisphaericaexon
TCONS_00068271-exon-scaffold_482-1575043694:384898..385065TCONS_00068271-exon-scaffold_482-1575043694:384898..385065Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:384288..385065 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.425191	0	0	0.139836	6.23965	2.78662	3.20795	7.52666	7.14164	19.9146	10.0764	6.19824	27.6646	24.679	7.17872	12.569	4.32056	6.67731	30.1332	44.5467	8.20037	7.14611	10.5623	11.2831	54.5316	34.3398	12.5638	10.8648	32.7302	17.9541
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011641Tyr-kin_ephrin_A/B_rcpt-like
IPR009030Growth_fac_rcpt_
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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