TCONS_00068267 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068267
Unique NameTCONS_00068267
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length760

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068267 ID=TCONS_00068267|Name=TCONS_00068267|organism=Clytia hemisphaerica|type=transcript|length=760bp
GCAAGCTTCAACAGAAAGTTTGTTTAGACAAGAAGATCGAATGACTAGAA
CGTTACAAGATTatacttgaaaatatttttttttttcataaagaaaAGTG
AAAGGCAACTTTCAAGTGCCATCGTTTTATAACATTcacttttagtttta
aaatgttttcgAATTTGACATGGTTTGTTGCAGTTTTAATCTGTTGGAGT
TTTGTGGATTGGAAAGTCGATGCTCAGTTATCTCCTGGAAAGCCAAATGT
TTGTTCAGCTACCATTAAACAATTATATTATGTGTCTGTCCGAAAATCGA
GGATTGGTTATCAGAATTATCGGACATGTTGCAAAAGGGTTTTGAGAGCT
TGTACCAGCAGGTGTACTCGCTCTAGAAAAATTACGGTATATTACACAAC
TGCTGAAGTGCGATACAAACAGGGTTATCGATACTTCTGCTGCTCTGGAT
GGGCGAGACAAGGTGATAGCTGTCCTACACCGATTTGTAATCCTGGTTGT
GTAAATGGACATTGTTCAAGACCTGGTGTTTGCACGTGTAAATCAGGCTA
TAATGGAAACAGATGCGAAAAAGATATTGATGAATGTTTGAGGAAACCTT
GCGACCAAACTTGTAAAAACCTTCCTGGAACCTATGCATGTTCGTGTAGA
ACAGGATATAAGAAAATCAACAATGATCCAAAATCTCGTCAGTGTGTCAA
TGTGAACGAATGTTTGACAACACCATGCAAATGTGCTCAACCGAAGAATT
GCAAAGCTAC
Run BLAST on NCBI

transcript from alignment at scaffold_482:367287..374313+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068267 ID=TCONS_00068267|Name=TCONS_00068267|organism=Clytia hemisphaerica|type=transcript|length=7027bp|location=Sequence derived from alignment at scaffold_482:367287..374313+ (Clytia hemisphaerica)
GCAAGCTTCAACAGAAAGTTTGTTTAGACAAGAAGATCGAATGACTAGAA
CGTTACAAGATTatacttgaaaatatttttttttttcataaagaaaAGTG
AAAGGCAACTTTCAAGTGCCATCGTTTTATAACATTcacttttagtttta
aaatgttttcgAATTTGACATGGTTTGTTGCAGTTTTAATCTGTTGGAGT
TTTGTGGATTGGAAAGTCGATGCTCAGTTATCTCCTGGAAAGTAAGTTTT
ATTTGACTGGGaatttttttgtccacttttttgcactttttaaAGATCAA
TATCTCGAGCCCGTGTCTTCTTTACAGAGAAATACATCCTCAAAAATTAA
TGTACGTACAATGAAAACACAAACTTTTTTCGGCAATTCCCTGGTCTTGA
TAAATGCTGAAACACATTATTCTTCTAAAAAGCTCATATAATAATTTTAA
CTTAGCAAGGACTTTCTAATTTGACGAATTAAAATTCCAAGAGACTTTTT
ATAAAGCTTTAAGCATGAACTTTCAGCATCTTGCGGCTTAACATCATTAC
AATCAACTAATAATAACTCGACCATGATTTAATTAATAGCTCTTTGGTGA
CTGTTACCCTCATCATTAAtgcatttttttgcgtgatattaaaaaaaact
acgCAGCtactttaattttgaaagaccttttaaaagttatctGGAAGGGG
GTACTCataaaaaaatgccaaatacTGAAATGAAAAAGTCCCCTAGCCTA
AGAACCGAAAGCACAAAGTGAAGTTGAATAAGTCATCTAAATGGTAGATT
TTGAGAAGATGAACTCTAGACATCCCTGTATCAGTAACCAGATCCGCCTC
GGTGGATGATTTCGACCACTGGTGGGAGATACTGAGTACTCTTAGGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTCTTttagccaactgaaaatattctttaaaattaataaacgg
gggggtcctaataaggtccgggggggttggaaaattttcgtaaaattaac
aagcgggggggggaccgtttatttggcacctaagagtaagcccgctaaga
attacttaaaattttctACCCCAATTTAAACAATGAAATTTATGATCTTA
CCCCGGTCAACGAGATAGGGGTGTAACTTGGGAACCATTTAAGTCTCAAT
GATGCTGAACGAAATACACtccattctcacagacccgctaggattttttc
agctagtggggataaaaataacgatCTAAATAATGGTGggaaatcataaa
atgataTTCCCGTACTTTTTTGACTGTGGATttaaaattccattgttttc
aagttagaaaactcggtggggatgggaaaaaaggtgtcaggaaaattgcc
cccgagaaaactANAAGATGACCATTGGGTATACCCACCGTTCACTTAAG
GTTAAATTCAAACAGTTTAAACCTACTAAAGCTTTATTTTATATTCCAGT
TTTTTTCGGTGTCAGGAAAATTTCCCCcgagaaaactgccccccggaaaa
ctgccccctagaaaattgccccccggaaaacggccccccagaaaattgcc
ccccaggaaaattgccccccggaaaacggcccccagaaaattgcccccta
ggaaaattgccccctaattttccatttttcgaaactaaatctaactcaat
tttcaacatCCTTTCTTTAATCAATCAACAAACATTGGAGCTCGATTGGC
TCGATTTGATTCAAAGTTTTCGAAACGTTAAAGTTTTTGGatgttttcaa
tgactaaaAAGGGACTTAAAACATTTCTTTGTGAAACTTTTTGGAGATTT
GAAATTTCCCATGTAAAAAACGGATTTTGTAGACCGTGCACggtaaaaca
aaaacattgaattatcaaatgaattaaaattcttaattcttaaagaaaaa
agacgcctcaaaaacgacttttacaagttttgtatgAGGTGGAGAAAGAT
AGTCGAGTaataaaatcactttcaaaaaaatctttccccaTTTCTTAACC
CTAAGCGCTTAagctaagggaactaatttttactaactcgccaaaataag
ttcccaccaaaattaaaatttcagttttcttggctaaataacccctgaaa
ttcaacaaagttgctcaaaataagatgaAATAGAGCAGATTTGCGTtgtc
attcgctaaaattaattccaaccacagttaaaaaattaattacagttttc
cccaaaaaaagttcccaccaaaataatctatttttcgaaaattttctacc
caggacattgtTGATCCAACCCCTCCTCCGCTTATCAATTTTTCGGAATN
NNNNNNNNNNNNNNNNNNNNNNNctagggggcaattttcctagggggcaa
ttttcctagggggcaattttctagggggcaattttccgggggcagttttc
cggggggcaattttctcggGGGCAGTTTTCCTAGAACCGGGAAAAAATAG
CAtggttttatttgattattttcagtggggactaAAATTGGAGGATGATT
TTTCCACTGGAgacgatatttttgccaatttttccagtgggaagggccAG
TGGGCCTTTCAGAAGGGGGTGTCGAAATAGGTAGCTTGTAAAATTAGCAA
TGCATTCTCTTCGTACATGATTATTTTCAGATAAATTTTTATTAGTTGTT
GACATTCAGCACGATAAATATCGACCAAATGCTTATCACAGCTTGTATTT
CTAAGAAGGCCCATGAGACCCATAGCTCACGGTGCGTTAGTAGAGATTCT
GTGTGAACACAATCATTTCCCTACCTTGAACGATACATTTTGATATTCGA
TATTTTCTTCCTTGCTTTATTAGCTATCGTTCAAGATTGTTTTGAGAATG
CTACTTCCCTTATGAAATTTGAGATTATCAAAAAAGCCAACAATTGCATT
TTCTTGTTATCAAGTAAATACTCCCCCAAAAACTTGCGAATCCTTCTGCA
AATAAGAAACGCAAGAATTGTAAAATGTGACTAGAaacaatagatcttat
cggagtttttgatttttctaaaaaagtgatgcattgtgggattgtttcgg
aaGTATCACAATAGGATttcctcgaggaattcctaagagatttttatttt
aatactcccaaaacaatcccacaatgcattgcttttttagaaaaataNAG
AAGGGGGTGTCGAAATAGGTAGCTTGTAAAATTAGTAATGCATTCTCTTC
GTACatgattattttcaaataaatttttattagtTGTTGACATTCAGCAC
GATAAATATCGACCAAATGCTTATCACAGCTATGTATTTCTAAGAAGGCC
CATGAGACCCATAGCTCACGGTGCGTTAGTAGAGATTCTGCATCAACACA
AACATTTCTCTACCTTGAACGATACATTTTGATATTCGATATTTTCTTCC
TTACTTTATTAGCTATCGTTCAAGATTGTTTTGAGAATGTTACTTCCCTT
ATGAAATTTGAGATTATCAAAACAAAGTGAAAATTCTAACTCAACGCAAA
TCAAAGAGATAATCATTCTAAAAAGCCAACAATTGCATTTTCTTGTTATC
AAGTAAATTCTCCCCCAAAAACTTGCGAATCCTTCTGCAAATAAGAAACG
CAAGAATTGTAAAATGTGACTAGAaacaatagatcttatcggagtttttg
atttttctaaaaaagtgatgcattgtgggattgtttcggaaGTATCACAA
TAGGATttcctcgaggaattcctaagagatttttattttaatactcccaa
aacaatcccacaatgcattgcttttttagaaaaataaaaaacttcgaTAA
GATTTATTgtcgtttttttttcacttttttagaagaaaaaaactttttag
taaGTAAGGACTCAAAATTAGGTCaatttttaagctattttcagtttgat
tttaaaacttttggaaCATATTTTGACAACGTTTAGCGAATTAAATAACA
TTTAATGATTAacgcaagaaagtgcatgtttCCCTCGTGTTTCATCGTCA
AATCTGCATGTTGAGTGTTTGTAAAACGAGTGGTCGAGGTTGAGTCAatt
tatacacccccttctcacagacccggtaggatctttcagccagtggggat
aaaaaaaacagactgaaactcgatgagattgatattcccatattctttat
ggttgaagatttgaaattcattttttttcaagtcagtGGGGAtaggaaaa
atagcataatattgtGCAATTCCCGGGGTTTGTGAGTGTATGGGTGTGTG
GGTGTATTTATAAGGCTAGCATATGAATTATTTACTGACAAACTGCTTGA
AATAACTCATGGCTTAAAGTCTACACTAACACATACTAAATGCATGATAA
CTAATCTTATTATAGAGCTAATGTTTGCGCTGAAACAATCAAACAACCTT
ACTACGTGTCTGTCCGAAAATCGAGAACTGACTATCAAAATTACCGGACA
TGTTGCAGAAGAGTTTTACGCTTTTGCACAAGCAGGTGTACTCGCTCAAG
GTAATAACTATTTCCATATTCTCATAGGCCAAATGTTTGTTCAGCTACCA
TTAAACAATTATATTATGTGTCTGTCCGAAAATCGAGGATTGGTTATCAG
AATTATCGGACATGTTGCAAAAGGGTTTTGAGAGCTTGTACCAGCAGGTG
TACTCGCTCTAGGTAAGTTtataatttatatttatattactAAATAATGG
CGAGAAGAACTCtcacaaaaattatatttccccTACGGTATACTGAAAAG
ATCGATCAGAATGTATTTAAGTAAAAATCAACTTAAAAACTCAATGCATA
CTCTCAAGTTGaacatttacaagaattttcgtcattttcgtcccttatta
tatttttctaaagaacgcgtcatctctattgttttaaataaccaattatg
tgagcatcttgtaaaaaactTCAATACAACTGACTCTTACTCCTTCATGT
GTGTCTCATTTTAAAAACGTAAATTTTTTCTTCCAGAAAAATTACGGTAT
ATTACACAACTGCTGAAGTGCGATACAAACAGGGTTATCGATACTTCTGC
TGCTCTGGATGGGCGAGACAAGGTGATAGCTGTCCTACACGTAAGTTTTT
TAAATCAAGAATCCTCGCtgtttttttgccaaatcttcgaaaaaactcCC
TGAGTTGTATATATGTATCTTAAGGTATTTAATATGTTATAAGCTTAACT
TTGCTTATAGCGTTTGATATACAATGGAGTCTCGATAAGTTAAACACCCA
CGGGCGGGGATTATAGATTTGTTCGCGTTGAGGAAATTTTGAGCTttaga
gtaaggtttataactGAAGGAACCATAAAACTAGTTTAAGtttaggagac
attcgagttaaagaggccCGAACTATCTTTGTATTTGACTTTTAATcgga
ataccttatcggggaaaaattttggtcggggaaaattttggtcggggaaa
aatattcgttatatggccgaaatttcgtcacttttccccgacgaagtttt
cccgaTAAGGTAACTGCGTAAGTTTTATCGCACATAAGACTTTTAAAGAA
AGACAAATGAATGAGGAATCTTACCTACCTTTAATGAAGAAGCtgtttta
ttcttcattttagCGATTTGTAATCCTGGTTGTGTAAATGGACATTGTTC
AAGACCTGGTGTTTGCACGTGTAAATCAGGCTATAATGGAAACAGATGCG
AAAAAGGTCGATAATTCCACTACTTTTTAGACAAACTCTTTCATTCATTC
TTGTGCATTACCTATCAAATATTCagaaatgattttcaaaacttACGAAT
ACCAACGCTTATGTCTAATAGAGATAAATTTTCCATTCAATAATCTCCCT
CAGAAGGAGATTtagaaattttcgaaatttggtgaGACAAGGTTGTTTTG
GAGAGTACGACAATTAACAGACCAGAACCATCTTATAATTTTACCATATC
ATTTCTATTACAGATATTGATGAATGTTTGAGGAAACCTTGCGACCAAAC
TTGTAAAAACCTTCCTGGAACCTATGCATGTTCGTGTAGAACAGGATATA
AGAAAATCAACAATGATCCAAAATCTCGTCAGTGTGTCAGTAAGTCAGTA
ATGACTGGATGAATGtgttaagctttttttccttTGACGCCATAGTGGCG
GTTACTACATAACACCCAGGGGCGGGGGTACTACGGTTGGCGGACgtggg
gtatgtgcggacgggacctacAAAAACCGACTCtaagagagacttttttt
ttaattttcttcgatttttaaaaaaagtggtacccttaaagagacttttt
tacaattttttctcttgaaatcaaaaaaaattcccaaaatcgtgaatttt
ccgacccttagagagagtaatttaaagttttctgatttttccgacccgta
gagagactttgaaaggtgaaaagaccgacccttaccgtccgcaccaGCAC
CCATTGTTGCCTAAGTATCCTTCTCAGGAGAATACATCACCACGACCTTA
TTTCTTACTTTTTAAGATGTGAACGAATGTTTGACAACACCATGCAAATG
TGCTCAACCGAAGAATTGCAAAGCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042611XLOC_042611Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068267-exon-scaffold_482-1491911889:367287..367527TCONS_00068267-exon-scaffold_482-1491911889:367287..367527Clytia hemisphaericaexon
TCONS_00068267-exon-scaffold_482-1510915933:367287..367527TCONS_00068267-exon-scaffold_482-1510915933:367287..367527Clytia hemisphaericaexon
TCONS_00068267-exon-scaffold_482-1575043694:367287..367527TCONS_00068267-exon-scaffold_482-1575043694:367287..367527Clytia hemisphaericaexon
TCONS_00068267-exon-scaffold_482-1491911889:372264..372398TCONS_00068267-exon-scaffold_482-1491911889:372264..372398Clytia hemisphaericaexon
TCONS_00068267-exon-scaffold_482-1510915933:372264..372398TCONS_00068267-exon-scaffold_482-1510915933:372264..372398Clytia hemisphaericaexon
TCONS_00068267-exon-scaffold_482-1575043694:372264..372398TCONS_00068267-exon-scaffold_482-1575043694:372264..372398Clytia hemisphaericaexon
TCONS_00068267-exon-scaffold_482-1491911889:372723..372826TCONS_00068267-exon-scaffold_482-1491911889:372723..372826Clytia hemisphaericaexon
TCONS_00068267-exon-scaffold_482-1510915933:372723..372826TCONS_00068267-exon-scaffold_482-1510915933:372723..372826Clytia hemisphaericaexon
TCONS_00068267-exon-scaffold_482-1575043694:372723..372826TCONS_00068267-exon-scaffold_482-1575043694:372723..372826Clytia hemisphaericaexon
TCONS_00068267-exon-scaffold_482-1491911889:373350..373442TCONS_00068267-exon-scaffold_482-1491911889:373350..373442Clytia hemisphaericaexon
TCONS_00068267-exon-scaffold_482-1510915933:373350..373442TCONS_00068267-exon-scaffold_482-1510915933:373350..373442Clytia hemisphaericaexon
TCONS_00068267-exon-scaffold_482-1575043694:373350..373442TCONS_00068267-exon-scaffold_482-1575043694:373350..373442Clytia hemisphaericaexon
TCONS_00068267-exon-scaffold_482-1491911889:373700..373825TCONS_00068267-exon-scaffold_482-1491911889:373700..373825Clytia hemisphaericaexon
TCONS_00068267-exon-scaffold_482-1510915933:373700..373825TCONS_00068267-exon-scaffold_482-1510915933:373700..373825Clytia hemisphaericaexon
TCONS_00068267-exon-scaffold_482-1575043694:373700..373825TCONS_00068267-exon-scaffold_482-1575043694:373700..373825Clytia hemisphaericaexon
TCONS_00068267-exon-scaffold_482-1491911889:374253..374313TCONS_00068267-exon-scaffold_482-1491911889:374253..374313Clytia hemisphaericaexon
TCONS_00068267-exon-scaffold_482-1510915933:374253..374313TCONS_00068267-exon-scaffold_482-1510915933:374253..374313Clytia hemisphaericaexon
TCONS_00068267-exon-scaffold_482-1575043694:374253..374313TCONS_00068267-exon-scaffold_482-1575043694:374253..374313Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:367287..374313 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0633952	0.10718	0	0	1.23096	0	1.57745	2.32858	2.17914	6.59405	4.34299	1.34774	5.50265	6.69499	2.30738	4.32695	1.91217	2.05359	8.14451	12.3632	2.23497	1.7296	1.06737	2.81546	13.6914	7.47583	0.969285	1.17497	5.2431	4.25475
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068267 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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