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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068259 ID=TCONS_00068259|Name=TCONS_00068259|organism=Clytia hemisphaerica|type=transcript|length=2271bp
GCCATTAGAATATGCCAGCAAATTTTGAAGGCAGaCAGACAAAAGAATCA
TCCAATAAATTCCTGGCATATATCTTGACGAGTAACAGAACTTCACCACA
GACAAAATTGAGTATTTGGCAGCATTTGGAGACTACAAGTgacgaaataa
aaatattctttgatTGACGAATCTCGATTATCTGGTAACTCTTGGTGTTC
CAGACGTAATCGAAGAGAGAACATTGAAGACATGCCACGTCCACGAAAGA
CGAGTTATGGTGATGATAAACCACCCTATAGTTACGTCGCTCTATGTGTT
ATGGCGATCGATAGCTCGCCTACCAAAATGATGACTTTGAGTGAAATCTA
TAAATTTATTACCGATAATTTTCCATTCTATAGAAAGTCGAGTAACAAAT
GGCAGAACTCATTACGTCATAATTTATCATTTAACGATTGTTTtgtgaaa
atttcgaaatcgaATGATCAGTCCGGTGGAAAAGGAAGCTACTGGACGTT
ACATCAAAGCAGTACTCAAATGTTCGAAGAGGGAAGTTTCCTCCGGAGGA
AAAGACGTTTCCACGATAAGAACACGCATTCAAACAGTGTCGAATTGGAG
GAAAGACTTATAGATAATACTGACTCCTCACACAAAACCAACCACAGACG
ATCTCCTTCTGCAGAGAAAATATCAACTAACCAACGAAGACATTCTGACC
CTCAACCCAACTTAAACAATACAAGTCCAACTAGACGTGAAATAAGAACA
GCCTCTGCTCCTTATACCTCATTCACGATAGACTCTATACTCAGTGATAA
TAAGAAAGACGAGACAAACTTTTCACGGTCTTCTCCTCATATCACATCTT
TGGAGGGGAATGTTTTGAGTAGGACTGACAGCTCACGTGTGGCTTGGAAC
AGGCCGCAACCCATGAATTATAAGTATAGACATTCGTTTGATAGTTTTCA
AAACATGCACGATATTTAAAAGTGTTTTATGGGGTGATATTCTCTTAACT
ATTTTGTTGTTGTGACTTTAGGAGATCTACATTTTAATAAGGAGACCCCC
TATACATGAACAAATTTGATTCGAAAACATAAGCAAAATTAACCTTTGAA
TATGGGATTTGgttaaatttttatcatattttagcAAAAGATCTGCCCGG
ACTTCCTGAGGATGCATCTTCAGTAGATTATCACAGATGAAATCTTATCG
TAATTTGTAGAATTTTTTCAACCCGCAGCCACTCGGGCAAGTTAAggcct
gtgcaaaaaattaactAATCAAATAATGCGTGATGGCCAGTTGTTCCACC
CCGTTTTCGggaaaagtttttgatttttctcactCGTCATATTAATGcct
tttcaaaaagtcatgggccaaaaattgtgttttagccattttggaaaaat
taaggaaaacactttacgtcagcaaaaatttaaactGCTTATAGCTCCTG
GAATATTATCCAATTGAGCTCAAATTTGGAAGGAAGTTAGGGTTTATAAA
TATCTctcgtttcaaaaaaaaacattctcgaaaaattgatgacgtcagca
aaaatcagcaattttcttttttcctcaaaaaatgctgacgtcatcaattt
ttagggaaattttttttttgaaatgaaagataTTCATGAACCCTACCTAT
TTTTTCCGGATATGAAAAACATTTATCCCCCCTACCTTcgtacaaaattt
gagctcatttcAATAAATATTCCAGGAGATATTAGTATTTCAGTGTTTTG
CCTTAAATTTCCCAAAATGACTGAAACAGAATTTTTGTCCcaggactttt
tggaaaggtattaatatgaagagtaaaaataacgaaaaattttcccataa
aAAGTGGTGGAACAACTGGCCGTCACGGCCGTCACGATTTATCGGCTTTT
TTGCACAGGCCTTAACTTGCCTGATCAAAGTAGTGAAGCCATTATTCTAA
ATTTAAgagttaaattttgaaattgcttTGTGTAAGTTTTTTGAATGTCA
ACTTTTGATTCCTCAAAGCACAAACGTTTTGTgttttagtatatttttaa
aatcataaaTGGCTTCTTATTATCTTCATAGGGGTTGGGCTtttcctgaa
gaaaaaaaatttaccccaTACGAACGGGTACCCCACTTTTGGAAGAAAAT
CTAGTCCTGGATTTTAAGACATACCtggatttttcaagaaatttgaatta
ccCTCTGGATTTTCTTGGTTTCTTAGGGTCTTTCATGATCTCCTGGACAA
GCAGAGTAAATTCTTTTTTAT Run BLAST on NCBI protein sequence of TCONS_00068259-protein >TCONS_00068259-protein ID=TCONS_00068259-protein|Name=TCONS_00068259-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MPRPRKTSYGDDKPPYSYVALCVMAIDSSPTKMMTLSEIYKFITDNFPFY
RKSSNKWQNSLRHNLSFNDCFVKISKSNDQSGGKGSYWTLHQSSTQMFEE
GSFLRRKRRFHDKNTHSNSVELEERLIDNTDSSHKTNHRRSPSAEKISTN
QRRHSDPQPNLNNTSPTRREIRTASAPYTSFTIDSILSDNKKDETNFSRS
SPHITSLEGNVLSRTDSSRVAWNRPQPMNYKYRHSFDSFQNMHDI Run BLAST on NCBI transcript from alignment at scaffold_482:239136..254876+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068259 ID=TCONS_00068259|Name=TCONS_00068259|organism=Clytia hemisphaerica|type=transcript|length=15741bp|location=Sequence derived from alignment at scaffold_482:239136..254876+ (Clytia hemisphaerica)
GCCATTAGAATATGCCAGCAAATTTTGAAGGCAGGTaggatattttaaat
tttagtttgtattttgCTTATGCTTCGTCGGCAcggttttatttttgaaa
ctttctgatgtttttgtctttttatagtaaagtgttgttattttcaatat
tttttaagcaagaaCTAACTTGTACAATTGATACACGGTGTTCTATGCTG
GCGCAATCTTCAGGCAATACAATTTATTGTAGATTTgatttaaagtattt
tatttgAGCATTTTGGTGCAATTCCTGAGAgactacaaagccttaaaaat
tcTTGATTAAGTTGTTCTTTATGCTAAGCATCGTGTTTTTAGAAACTTTA
TTATGTATAAAAGAGCATGCATCGTCggataatatttgaaaatattgacg
CAACCGAGTGGTAATTTTTTCTTCTCTGAAACTTTTGTAACAAGTAGAca
gaaaaacaaacataaaaCTGTCACTCAAAAGATGACACATCGAAACAAAG
AATTCTTTAGAAAGTGAGGTACATTATGGCACAATTTTTTCTACACCATC
ATCATCCAGTCAACAGAGTAGGCACCTAACCCACTAATAATATCCGGCCA
TCGAGTCGGAAACAAAAAGATACATTTCGTGAAATTGCATTCAACcatat
tttattgcaaaaaatgtcaacgtacatcaaaatttattatacGTAACACT
GGTCAGAAATATTTGAGTGCCTCCATATGtcaattaaagtctattcacga
taagtgtgcactcttttttcatttacctataacttttgaaggaattcttc
aatctttataaatttggtatcattggaaagatattagtgagtggaacaat
ttgaaataaaaaaaactttaacaaattataataatgaagatgaaaacgaa
gaagaaaaaaatgaagatcttgtagaaaagtgctataactatcattttca
cttaatcatcgaacgtcatcactgtgaaaaaaattctcaaaaataatcat
tcagtcaaaagatatcaaacaaagttaaaagctgattgacgtctaaaaac
gctgttttctgcagttttttgctgttttttggggtcaatcacttattaac
tttgtatcataactttatattgaataaatattttaatgaaattttttcac
agtgatgatctcctaagatcaaagaatctctttcgtgaaaatgaaagtta
tagcatttttctacaagatcttcatttttttcttcttcattttcatcttc
atTTTTTAGAATTCTTTTAAAGATTTTTTTATTTCAAATTGTTCCACTCA
CTAATATCtttccaacgataccaaatttataaagattgaagaattccttc
aaaagttataggtaaaagaaaaaagagtgcacacttatcgtgaatagact
ttagtgaAAGCTATTAATTCAAATAAATCGATACCACTCCTTTATAACTC
TCAAATCTCTCAAAATTACTTTTCAATCAGCGCAaagttttttctataag
aataatGTTAAGGAGAAAATCTCTTGATGAATCAGtttgttgttttgttg
aaaatatatttacaagaaGAATGTCGTAAATAAAGGAAACCAAGAAAAGA
CTAAAGCCTATCTTTATAAACTTGCACTACAATTATCGCTTCCACATAAA
AATACACTGTCacatttcaaaagtcaaaagctCCAGTAGCTCAACTGTTC
CGAAAATGAGAGCGTGTATTTTACaaaccggtctgtaaaataccaaataT
CACCCTTAAGCTGCTTTCTTGCTATTAAGTCCGTAAGCAAGTTCAGAGCC
AATCATTCTGGTCCCTAAAATACCAACCTAAGGGATTGCTGACCTGACCT
TGCCATCTTCTACCAGCAACCAGTCGTTTAATTTTAATAGCAATTACTGA
TCTTGAAGGGAGCGTCATAATAATAACGGAAGGTGGGAgacaaaaaattt
tcgaaaattaataaccggGTGAGGACGTTTTTTCGTTTATATATGGTGCA
CTAATTCTTGTTTTTCTTGCTACTTTGAAACAATATTCAAATGTCAACAA
ATTATATCTTTTAAAcgcaaggaaaatgaaaatggagatgaagaataaag
aagaaaaattcattcTTTGCTAGAAACTGGTACCGAGTTACATTTTCTGT
CAAAATATATGGAGAATTTCGGTTATTTCAtcgtttttgtaaatttgaag
tTCGGGTGAGAAAATCACTTTTGAGCTATTTGTTGAATGTAATCAAATAA
TttaatttgggaggggtttgaTTTGGaagctatattctgagccttaggCC
TATGGCCGCTTCAAAATTGTTTGTGGCTAcacttctttttataagaaaca
gtatgtcttttttgtcactttgagcctcaaattgttatcatactgttctt
atttataggatgTAATCGAtttatagcaatgtgccctcccggtagGATGT
AATTGAGGTAATTTAGGCGTTATATCCAATTTGTACTACTTTGACtgcta
aattgcttgaaatcgagtaattccaggctcagcattgttctaaaattgtt
cttatttttatgagtttttgagcctcatcgttcttataaaattgttctta
taaaaaaagtgtatgaggctataagatttcgtgggaatttcctcTTGTTC
TCTAATGACCTTGATTGGAGCCGCAAAAGCCAATGTTTTTCGCTTCACCT
GCCCAACTTTTAGCTTTTAGAGACTTTCGATGCAATACTTTTTAACATTA
ACtgatgacaaaaattttttatctaatGTAATGTTttatctaatgtaaaa
aaagtttttatctaatgtaattatttttctcagaTACTGTAGTGctctga
aatatctttccaacggtatatatcATACTAtagtacacccctgtgtcaca
gacccactgggacatttggcaaaaatttcgtccccggtgagaaaataccc
tggaattccAGCTCcgctgggaaattgactttgattacatccccattcaa
aattaaacgattaaaaattgcactccaaaccatccccactagatttttta
accttggaacaatagaatttctacaATCATTGTGCtttcaataagaattt
ttattccCAATGAGGGAAAaacttccaccggggctgtgagacaggggtgt
tatagcTGACGATAGTGTAAAAATGAAAAGCGAAACCTGAATACTGAATC
AGCGCACACTTGAGTGGGTCAAATTTAAGAAGTTAAAACTAAAATATTTA
AAGTAAAGTCTGTCCCAATATAAGCTGCATCTGAGACAAAAaatgctata
acttttgatttaccGAGTTAGATGGAAGTTTCGTGCTAGTTAAAATGATA
ATCTGGAGTGGAAtcaataaaaaggaaaaatgaagatgaaaaatgaagaa
gaaactcaacttcttgtagaataatgctatCATTACTAATCTTCAAACTT
AGAAGGTCATAAatatgaaaaaactttcaaatacagcTTTAAACTTTCCC
TGGTTCGCGAGAGAACTAGGGCtccttttgttgttttttgatgattttgg
aaGTCAATCAGTGATAAACTTTGTACTATATTTATATCAATTGAACaagt
ttcttttgaaattttttttaatacctTGATaatgttctaagatcaaagaa
tcactcatgtgaaaatgaaaattatagcacaattattgaagaagatgatt
tttctcttttttcatttttcatcttcattttttcaactttttttttaact
ttttcttttcgtAATATTATTCCGCTCctatttatcttttcaacgagcac
aaaaccacTATTTAATTTGATTTCTGTCAAAATTGCAGCCTTTTCTGTCT
CCGCTTCAGATTATATTGagataataaaataattttcttcttaaaaCAAG
TTTTTTAGAACGGTTTGTTCAGTCGAAAGATGTTCTAATCGAACATTTTG
TTGGGCTTCAGGTATTGTTCAGGCTTTCCCTCCTAAAACTCGGCTCCAAT
AATGCAGTAAAGTCCATTGAAActtggtcaattttttttacatacGATAA
ACAAATATCGAAAAAGTCGTTCACGGACTGGTCTATAAAATACACGCCCT
AGATTTGGAGAAGAATATTGAGATCAGAAGAATTTTTGGGGCTTTTGagt
tgaaatttggaaaattagtttttctttGAAGCAATTTACAAAATCTTAAG
TCAGTCACCTGGTTGGtaagtattttacagaccggtcagtATTTTAAACG
AAAtgtttaaacttttaaataacCACCGACCTAAATTCGTTGAAATGGTA
ATTTGTATTCAACGATATTTCAGCGGGCCTTGGTCTTAGAGGATTCTCGT
TGATAAAAACTCATCCCTGCAGACAGTTGAttattaaaatctattaaatt
gATAAATTTCGCCAATTTCCAACTCAATCAGATGGcaaactttcaaattt
gtacAATTGTAATGTTTCCattattcaaaagatttttactaCTCCGCTGT
TCGAGTAATAGTGACTTTTTGAAGTGAAGCGACTAGAGTGCAAACTTata
actatttaaaacatcatgAAATTTACTAATGAGCAGTTGCTTAAGCCAGC
TGAAAGTAAATCAAGTTGCTAATTCGAGGTAATTGCAATATTTTTTCTAC
GGAAGCCAATTGAACCATTTTTAGAAATGGTCACGTGTTTTATATGTCCG
CTTTTGTTATCGTAAACGatatttccaatattttatgGATGGGATATTTT
TGACGTTTCTGGATGAAAAGACCTTAGTATGTTATTGCTTTTACGATTTG
TTAAGTCatgctttttgatattttgtttgcATTTCTGGAGCGATGTTTTT
TTTCGCCAAACTTTTCGATTTTAGCGGGGTTAGAACCACGACAACACAAT
TTTGGTAGTTcatgttatttttcatttacttCAATCAAAGTAATCGCGCC
TAATTGTTCGGTTTTTTAAGGAATACAGTTTTACTTATTTATTTCATAAA
TAATTGGGTGAACCAAATTGAATTTGTTGATCTACGGGCCTGACCGATTG
ACTGATCCTTATTTTAATGAAACTAAAAAAAGaagtataaaatttattta
actCATGTAAATGCTGGTTTTTAGAAAGAATCACACTTCGTGTGTTTCAC
AGCTTTGATCTAGatacctccttctcacagacccaatgGGCCCCTTCCCA
TTgtaaaatttggccaaaatattgtccccagtggaaaattataatccaat
ttttgtccccactgaaaataatcaaataaaccaatcctcactgcaaaata
tcatgctatttttcccatccgtactgaattttctgacttgtaaacaatgg
aatttaaaatTCCCAGCAATAAAAGATAAGAGAATATCAACCCACcctcg
agtttcagtccgttatttttatccccactggttgAAAAAATCCTAATTGA
TCCGTGATGAGGGGGTTTATGTAGAAAAACTCCAAAAGAGGTGTTTCATG
AAAAGCCATTTCTTCCGACAATCTGCCCGTGAAGTACAAATCTAATTTGT
TTCACTCAAATAGTAAACAAGCAATGAACAAATTATATATATTAATTAAT
TAAATATTTAATTCTGTCGTAGGATTGCTTAAAAATTCAGTGAAGGTTCA
ACAACgttcaacaacaaaacaaaaacggGTCCTTATTATCGTCCATTATG
GTATTATggattgaataaaatttcaattcaaaattcattCTTCATCTAAG
GAAAAATATCAGGCTACAAACATTTCGTGGTTAAAAAGATCACAGCCTTG
TAAAGAAGAAGTAATATTCGTTCTAATTTTAACACTCTATTGTCATGCAG
CctcatttgaaatttcaaattgaataaaattaacCAAGTTTTAAACCAAA
TAAATATAAtatttggtttttcgaagatatGATTCTTACAGTGACTTCCA
ACaggtaaaaacaaaaatacaaccATTATTCTAATAACCTCCAAGATAGG
GTGTTGCACTCAATGcttacaatgctggacaaaaggtttgtagacttctg
caatatttgcacaatacttcaatatcgatcaaaaacaagttcccaagagg
gtctgggtgctttccaaacccattcaaagctgttcaaagctGTTcacttt
gaaagtcacccactgcagtctaaccacaagggcaaaccacaaggtcttga
ttaactggcttacaccagtatcaaaacgctgattttttgcttgtggttcc
ctcaaaagcaagtcaaaagcaatgcaacgacttcaaaagtgtttttctta
acttccatcccctttcagataCATTGAAGAGTCGTTTTgctctcatcatt
tttcactgaaattttatttttctacaaccttttgtccagcattgtacaGT
ATGTGGAAATGTCATTCAAAGGCACTTCAAAAAGCAAGTTTCTGACAGTA
AAATATTCATAAATGGAGGAATATTTCTTCccagaaattaaaaaatgtga
ATTCATTTTGAGGATAAAAAAGTAGagcataaaatatatattttagatAT
AATtcaaaatctgtttttttttttaattcatttattttccaaaaacttat
ttttgtgtaccttaaaaataaaattaatttctaatttttagAGGAGTAAA
TTTCTATATTGATGAATTGATAAcgaggaaaattgaaaaagtattTGATT
CAAAATATCAAGCACAACTGAAATAAAAACCTATTTCAAACTTCGAAACG
GTTGTACACGTGCGACGTATTATGATGCTGGTTAAATCCTTACGCTGAtt
agatttgaaaataaagtcTTAACAAAATATCtgtaaaaaaaaaccaaaat
aaccaaaaaggCTCCACATAAAAGCAGGATGAAGACATTACATTTTGTTG
TCTAACAAGAGCAATTTCTGATTGataacatcaaaatcaaaattatattt
atccCAACATCAATTTGACTCAAAAAAATCTATACCATCACAATCGCGTC
CTAATGTAATATCTCGTTAATATCTTGTTTTGTTTACCTCAGCAATGTTT
ATTTGATCACACCcaaattccagaaaaaaaagcCATTAATTGCATTGTAA
CCATGACATAAGGACTTTTTTCATTGTTCCTAAAAGAATGCATCTCGTTT
ACTAGTTTTACCAATCATTACGGTTCAAGAGGTAGTTCGTGGTTTAAGAC
AGGCTTTCTCATCTGACTGGAAAGccactgaaaattaaaatgatATTGGA
CTATTCCAGGTAAAGTGTTTTTCTTATACAGTTTTTGTTATCTGTAAACA
TTTGCAGCGACCAAAAAATCACTTGATAACGACATTTTTTAAGATCGAAA
AGATTTTTAGAGGCAATTTGATTTGACGGTTGCAAAAGTTTTTATTACGA
AATGAAATTGTCTCGAAGCATGAAATAGCCCGGTTTTGGGGAATACAAAC
AATTTTGACGGGAAATTAACTTGATTAACTAAATTTATTCCTTTGATata
taaagaattaaaatatcaaaaaaaatagTATATGGAATGATTGGTGGTTT
CCAACTAAAAGTATTTTGCATTTGAATTAGGTTGAATTTaaagtagagtc
tctttaaccctttaagtaccaaTGTCGAGTATATTGGACATGGTCTATAT
ATGAGGACATAGCCCTCCTGCAATGCCCAGTTTCaattagaaatcgtcat
ttttcgtctaactcgtaggaatcggattatgcttcatggtcaagcaaaaa
aaatcaaaagtgattcaaaaagtttaaaaaaatgtaaagattagacaaaa
atcttttttgagattttgaccgttttttgatcatttttgacCAACAAGTG
ATccaaaaatctccaaatttggCTATGTTTTACTTCATTTTGTCATCCAa
cgaattgatttgaagttttaccactggttACCTTTTCGTCATTCAGTCAG
GTCCACGCAGCTGGCCTAACTGCTTTCGTTCCCTAATCTAGCCCCTTAGC
TGCTGCCCActacgcccttcctaaatcagACGACGTCAGAGAAGAAGAAT
aaactctaagctatccaaagAACTTCTAATTCCTTATGGTTCCTGAAATA
TAAGCTTTTAAGTCTTTTAAGTTTGATCTATagtgattttcttaaaaaaa
ttagaaaaaaggaccgtagcactgaaagggttaactcgaaaaatttttAT
GACCCTGTCAATTAACAAGGCCTTATGACCTTTTTCCATAAcacaaaatt
tccttaactcgaacaaatttgtgttcccatgcatgtttgagttatggaga
ctctacaattgtatatttagaaaaattgtaATTGTAAAAGTtgtctgaaa
aaatctttttagttCGTAAATATTTGTAGGaagaaaatatgtttttgttA
TATTGTAAAAGCTTCAGAGCCCACCTCGTCCTTATACACCTCTTACATAA
TCGCAAAATACTCAAGAAATGAAATTTGTATTTGTTTTAAGAGGTGTAAC
CCCTGCTAGATATTCTTGATTTTACCCTGAAACACTGTTTCAAAAGAAGA
TAGGGGTTTAGTGGTTCATTTCTGACCCTAATTCgaagggctgtaacttt
ttagaaagaaagaTATGTGATATCTGGCCCAAATATTGTacaaatgggct
tttccagaaatagtccgtgccccgccccccctgttgaggatattggatAT
CTAGgaggttaacgatttttgttcaaaaatggatattcagggggttaaat
atctacaagcgagcggatatccagggggtaagtgtcttttcaagtaaaaa
ctgcgatatccaggggtaagcatcttaaTAAGAGAGAATATctagggggt
tgagcatatttttaacagtggatatccagggggtctttactaataaagta
ggatatccagggggttcgatacttcgaaaaccaatatcctcaacagtggg
ggtaaaattttttttctggaaaagctcaaGTCTGATGTCATGATTTTTGA
AACGGAGggaaatcttcatttttcatcattcGTTCAAAAACCTTTAATTT
ATTAGATTATTCTCCTTGTAAATATGTTTCCAAGGGTGTCATCAATATAA
TTATAGCCGCATGTGTCTGAAGCCTTTCTCTGCAGCGTTTTGATTTCGGA
AAAGAATAATAAAGGATTAAAATCAATAGCATTTCTCTTAGACCAGCCTT
tgagtaatttttattttttcacaagtATGAATCATTTAATTTTTACTGGG
TTAAAACAACTCtatttatacagggtgtccggaaaaaagtatcgagttcg
aacatgatgTAGAAGGGAATGCacgtgtttaacaaaatgtaatgCCTCGC
CacctttttcatcaaattgtaACACTTTTGCgtgtttcatttttcaaatg
tttgatgaaaaatttttcaagtgGCAGCAGACATTAACTTTCAGTTAACG
TGATCAAAAATCTACTATTTGAAATTACAGGTTATATTTTAACGCAAACC
CGGCCGGCATGAGGTTCCCGCATTCTAGACTTTTATCACTTTCGAGTCAG
ATTTAGCCTACGGCATTTTTTCTACGCAGTAACGAAACagaaaatcccgg
tttttggtgaggtagtCACTAAGTCAGATTAAATAGGCACTCAAGAGATT
ATCGAATAATTGAATTATTGCAGTTATTATCAACTGAAACAGGAAATCGA
AACCAAAAAAAAAGGTAATCCACGTTGCAATTAGTACAAAGCTCACTTCC
CCATTAGTGCCTATTAATATTTCTCACTAATTAACTTTTTCCTTAATATA
TTATTCCGTATATTTTCTCAGATAGCAGATGATCGTTCTTAAAGTATATT
TTATGtctatctttttcattttccgtTTCGTTTGTATTCACTCGGAATTC
GACTTTTTCACCTCTTGAATATCATCAAAAAGTAATTTAAACATAAAGAT
CCTTAATAAAGCAACTGAACCGCTTAAATACACACCAAAGTAAAAACTCT
CGgaattataaattttctctGTAATACGTAAACTACAGCCATTAGGGAGC
TAGAGTTTTTTGAAAGGCAAATCGATTTGTTTCGGAAATCGATTTGTTAT
TGtggtttctttttgttttttagtaCGGGTCACTAAGGATAATTTCTCGG
AAGTGTTTTTATGGagattgttttaaattgcctcgaactatgaaaaacct
ttTCTGTAGCCGGTAGAAACAATCTGAAGTGgtcaaaaatattgttttaa
tgttctgaaaaaaaaattttcataaaatttaaatTGCACGCGATGGAATC
TTTTGTTGACAATTGACAATATTCTGAATGGCTTTTGAGTTTGCTTAGTC
AGCATAACATAACGAAGAATGCTTCCAAATTCACAAATTCGCGTCTGAAC
AAACTTTAAGATGGTTAGAATTCTTCTGATTTACTGGTCAAATGTCACGA
TTTAAGTACCGTGAGTGTCACAGCGTATGAATAACGCGCTGTGAAGACAA
ATACCGATTTTATAATACAAAACCAATGGCAGTCCAGGATGTTGGATGAG
GCCGCACGAATCGAATCACAAATAAAAGATGTAGAAAAGAGTCGATGAAC
GAGTGTAATCTCAGAAAATAACTtacatatttttatataatagaGAATCG
ATTAAAAAGTATTTTATCAATGAGTGGGTATTTGCTGCTACACAAAAAAG
TTAGTTTGAAGGAAACTCGTTTTACTGATTTTCATAAGCCACTTCAGAAG
AGTTTTGAATTACTGGAAATACTAAAATTATATATATGatatatatgaaa
tatatgATCTCCATCTTCGAGAAAATTCTTTGGGTAATAATGTCATTGAT
ACATGCGCGCAATGAAGTACAAgcaatcgaatctccttggtaggatttga
agcctaccgaatcctaccaaagttgtgtGGCCTAGCACGGTCTttctggt
ttttacacaaatgacagattgaaactaaaatttacacctaaatttcgaaa
aagatatcactcgaaaacaaaggaatcgctagattcaatccgtcgtcaaa
aatacggtgcatattttaaggcttcactttttcttgcctggttAAATATT
CCGTCTCTGTCAGGTattccaaatttcataaagtttcgagtattagttct
tgagatattcaactttttaaaatgatgacgtcataaataatgacgtcata
atcactttttcctaaaaaaactcaaattttgctgagaaaaaatttaagtt
acaccgaatacggtattctccATCCAGAtatgcttccaaaaatgtatagt
ttgttatagtttagggactggaactggggcggaaaaattaatgcaattct
gggacatgcattaagttacctgAGTCATTCTTCATcttcgttttcaaatt
tttagagaatttttcgAAGCTTTCATCAAACTACTGAAAATTATCTTGCC
AACGATTTATTACTTTAATTTGATTTTACTATCCGATGTGCGTAAATAGC
GACATCTGATTGGCTTTTTTGCTGTCCgatattttcgaatatatagcttc
catggaggctacatatttcaaaaattacctAAAATATGTATGAAATATAT
TTCCTTAGAactaccaagaaaccagatttacgagcatataaattggaatt
atgtttgaaaacgagatgaacggataataaaccatttatttggacgcagt
ctcatccgGGGGCCcctcatccaatatgaaaaatattaggctacgagaaa
agatatcttttctcgcacgcccaatatttttgcattttggattcgacttt
gtccaataactgctaAATATCTTTCTCTCATTggcaatgtttaaaaaaat
acagaTTGCTAGTATAATGAGGACGAATCCATTAGTGGAGACCAACAGCC
TACATGCGAGGGAAATTAGATATCACCCACCTAATAAATAAGGGGAGTAT
AGAGGGATTTGTCATGTTTTATGGTGTGGCTCTCTCTTTtttactctctc
tctctctctccctCTCTGCAACGTTGGTAACATTGGCATTTATGAAATAC
GCCCACATGTGTATACGTATGTGTAACGCCCACAATTTCAATTTGGAAGA
TAGGAATACTCTGATATCCGTAATGTACCTTGTGTCAAAGCCACACCATT
TATATTTATAGTTTTTGATGTACAAATAGATTCGAATTTCCTTTCGATAT
TCTTGTAGTCTTGTAATAAAACGTGTAGGTAGAAGCCATTATCATGTAGT
TTCAATGGGAAACATTTTATCGTCATATTTCCGAAATAGATAGCGAAgtg
tttattttgaagattcCAGTTATTTCCAAAGAATGAAACATCTCATTTGT
CGCCGCAATGATTTTGATAATACTTCTATCCCGATGTGGGGCTGTGAGGC
ACGGGTGTTAGTATAGAGGTTACAAGCACAAGGTTTTGCCGCTATACAGG
CATCTTTATTCACTCCCTCAAACCTAGGGCGTAAAACTTTGAGAGCATTT
TAGAAGGAAATTTTGTCTCATTCATGGTTCCCTTaactcaaattttatca
aatgatTTGTTAAAAATAGGTTCTatgtagggtccattttttgaaTCCTC
CCTCAGGCAAAATTAATTTTCCCATAGATAGCTGGTCTTTCTAATAACAA
AACCAATTGAACAAAAAACAGAAAGAGATTGATTGCCTTCATCACCCTCA
CGCCACCCTCATCTCTCAGTCACCCGCCCTGGAAGCTCATATTTAATGCA
GAAATTACAATCTTTGCATTCCACTGGACAATTATGTTCTAATTTACAGG
CTATTTATGGCTTTCCCGTTCTGTTTAGCCTGCTCTTTCCCTCAATAACA
CTATAAATACCACAGCTATTTGATCAGAcatatcattttcaaagtttgtt
tgtttttcggTTTGTTACTATAGTGAGAACCATACCATCATTTCGTCCCA
TTTTGTTATTTAATTGATTCAAATGAGACATAGTTGGTGGTATATCTCAA
ATACCGTTTCAAAAATACGGAAACAGCTCCTCTCAAAGAAGTCTGCCTAC
GCAATTTATTTTATATGTTGTCAGAAAATACATACTAAAAGATAAtgcta
aaaagtcaaaatttgtgtTCTTTTATACaaacaaatgaattcaacatgca
GTAACATCTCAATCTAAGCTTTTTTCCAGCGGTATACTTAAGGGGTAgag
aatatttttatatttttagaggTGATAATATATTTAGAAGATGATTGTAC
TTGGTAAAAGCTACATACGTTAGATAGTGGTGTGTGGTCATTCACATAAT
CGCCTCTGATGAAAAATCCTCTAATACCATTGTAAAGCCACAAAATTCTT
CAGTATGAATCTCTAAGCAATTTGTATGGAATTCTGGATGTTTTTAATAA
AACTGAATGTATTAGGTCCACAACCATTAACACCAAGAAATGACAGAGCT
TGCAAGTAACATCAACATCTCTTTTAAAAgtataaaatttctttctttct
ttagaCAGACAAAAGAATCATCCAATAAATTCCTGGCATATATCTTGACG
AGTAACAGAACTTCACCACAGACAAAATTGAGTATTTGGCAGCATTTGGA
GACTACAAGTgacgaaataaaaatattctttgatTGACGAATCTCGATTA
TCTGGTAACTCTTGGTGTTCCAGACGTAATCGAAGAGAGAACATTGAAGA
CATGCCACGTCCACGAAAGACGAGTTATGGTGATGATAAACCACCCTATA
GTTACGTCGCTCTATGTGTTATGGCGATCGATAGCTCGCCTACCAAAATG
ATGACTTTGAGTGAAATCTATAAATTTATTACCGATAATTTTCCATTCTA
TAGAAAGTCGAGTAACAAATGGCAGAACTCATTACGTCATAATTTATCAT
TTAACGATTGTTTtgtgaaaatttcgaaatcgaATGATCAGTCCGGTGGA
AAAGGAAGCTACTGGACGTTACATCAAAGCAGTACTCAAATGTTCGAAGA
GGGAAGTTTCCTCCGGAGGAAAAGACGTTTCCACGATAAGAACACGCATT
CAAACAGTGTCGAATTGGAGGAAAGACTTATAGATAATACTGACTCCTCA
CACAAAACCAACCACAGACGATCTCCTTCTGCAGAGAAAATATCAACTAA
CCAACGAAGACATTCTGACCCTCAACCCAACTTAAACAATACAAGTCCAA
CTAGACGTGAAATAAGAACAGCCTCTGCTCCTTATACCTCATTCACGATA
GACTCTATACTCAGTGATAATAAGAAAGACGAGACAAACTTTTCACGGTC
TTCTCCTCATATCACATCTTTGGAGGGGAATGTTTTGAGTAGGACTGACA
GCTCACGTGTGGCTTGGAACAGGCCGCAACCCATGAATTATAAGTATAGA
CATTCGTTTGATAGTTTTCAAAACATGCACGATATTTAAAAGTGTTTTAT
GGGGTGATATTCTCTTAACTATTTTGTTGTTGTGACTTTAGGAGATCTAC
ATTTTAATAAGGAGACCCCCTATACATGAACAAATTTGATTCGAAAACAT
AAGCAAAATTAACCTTTGAATATGGGATTTGgttaaatttttatcatatt
ttagcAAAAGATCTGCCCGGACTTCCTGAGGATGCATCTTCAGTAGATTA
TCACAGATGAAATCTTATCGTAATTTGTAGAATTTTTTCAACCCGCAGCC
ACTCGGGCAAGTTAAggcctgtgcaaaaaattaactAATCAAATAATGCG
TGATGGCCAGTTGTTCCACCCCGTTTTCGggaaaagtttttgatttttct
cactCGTCATATTAATGccttttcaaaaagtcatgggccaaaaattgtgt
tttagccattttggaaaaattaaggaaaacactttacgtcagcaaaaatt
taaactGCTTATAGCTCCTGGAATATTATCCAATTGAGCTCAAATTTGGA
AGGAAGTTAGGGTTTATAAATATCTctcgtttcaaaaaaaaacattctcg
aaaaattgatgacgtcagcaaaaatcagcaattttcttttttcctcaaaa
aatgctgacgtcatcaatttttagggaaattttttttttgaaatgaaaga
taTTCATGAACCCTACCTATTTTTTCCGGATATGAAAAACATTTATCCCC
CCTACCTTcgtacaaaatttgagctcatttcAATAAATATTCCAGGAGAT
ATTAGTATTTCAGTGTTTTGCCTTAAATTTCCCAAAATGACTGAAACAGA
ATTTTTGTCCcaggactttttggaaaggtattaatatgaagagtaaaaat
aacgaaaaattttcccataaaAAGTGGTGGAACAACTGGCCGTCACGGCC
GTCACGATTTATCGGCTTTTTTGCACAGGCCTTAACTTGCCTGATCAAAG
TAGTGAAGCCATTATTCTAAATTTAAgagttaaattttgaaattgcttTG
TGTAAGTTTTTTGAATGTCAACTTTTGATTCCTCAAAGCACAAACGTTTT
GTgttttagtatatttttaaaatcataaaTGGCTTCTTATTATCTTCATA
GGGGTTGGGCTtttcctgaagaaaaaaaatttaccccaTACGAACGGGTA
CCCCACTTTTGGAAGAAAATCTAGTCCTGGATTTTAAGACATACCtggat
ttttcaagaaatttgaattaccCTCTGGATTTTCTTGGTTTCTTAGGGTC
TTTCATGATCTCCTGGACAAGCAGAGTAAATTCTTTTTTAT Coding sequence (CDS) from alignment at scaffold_482:239136..254876+ >TCONS_00068259 ID=TCONS_00068259|Name=TCONS_00068259|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_482:239136..254876+ (Clytia hemisphaerica)
ATGCCACGTCCACGAAAGACGAGTTATGGTGATGATAAACCACCCTATAG
TTACGTCGCTCTATGTGTTATGGCGATCGATAGCTCGCCTACCAAAATGA
TGACTTTGAGTGAAATCTATAAATTTATTACCGATAATTTTCCATTCTAT
AGAAAGTCGAGTAACAAATGGCAGAACTCATTACGTCATAATTTATCATT
TAACGATTGTTTtgtgaaaatttcgaaatcgaATGATCAGTCCGGTGGAA
AAGGAAGCTACTGGACGTTACATCAAAGCAGTACTCAAATGTTCGAAGAG
GGAAGTTTCCTCCGGAGGAAAAGACGTTTCCACGATAAGAACACGCATTC
AAACAGTGTCGAATTGGAGGAAAGACTTATAGATAATACTGACTCCTCAC
ACAAAACCAACCACAGACGATCTCCTTCTGCAGAGAAAATATCAACTAAC
CAACGAAGACATTCTGACCCTCAACCCAACTTAAACAATACAAGTCCAAC
TAGACGTGAAATAAGAACAGCCTCTGCTCCTTATACCTCATTCACGATAG
ACTCTATACTCAGTGATAATAAGAAAGACGAGACAAACTTTTCACGGTCT
TCTCCTCATATCACATCTTTGGAGGGGAATGTTTTGAGTAGGACTGACAG
CTCACGTGTGGCTTGGAACAGGCCGCAACCCATGAATTATAAGTATAGAC
ATTCGTTTGATAGTTTTCAAAACATGCACGATATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068259-exon-scaffold_482-1491911889:239136..239169 | TCONS_00068259-exon-scaffold_482-1491911889:239136..239169 | Clytia hemisphaerica | exon |
| TCONS_00068259-exon-scaffold_482-1510915933:239136..239169 | TCONS_00068259-exon-scaffold_482-1510915933:239136..239169 | Clytia hemisphaerica | exon |
| TCONS_00068259-exon-scaffold_482-1575043694:239136..239169 | TCONS_00068259-exon-scaffold_482-1575043694:239136..239169 | Clytia hemisphaerica | exon |
| TCONS_00068259-exon-scaffold_482-1491911889:252640..254876 | TCONS_00068259-exon-scaffold_482-1491911889:252640..254876 | Clytia hemisphaerica | exon |
| TCONS_00068259-exon-scaffold_482-1510915933:252640..254876 | TCONS_00068259-exon-scaffold_482-1510915933:252640..254876 | Clytia hemisphaerica | exon |
| TCONS_00068259-exon-scaffold_482-1575043694:252640..254876 | TCONS_00068259-exon-scaffold_482-1575043694:252640..254876 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:239136..254876 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
BLAST of TCONS_00068259 vs. Swiss-Prot (Human)
Match: FOXB1 (Forkhead box protein B1 OS=Homo sapiens GN=FOXB1 PE=1 SV=3) HSP 1 Score: 166.392 bits (420), Expect = 1.990e-45 Identity = 72/110 (65.45%), Postives = 87/110 (79.09%), Query Frame = 1
Query: 232 MPRPRKTSYGDDKPPYSYVALCVMAIDSSPTKMMTLSEIYKFITDNFPFYRKSSNKWQNSLRHNLSFNDCFVKISKSNDQSGGKGSYWTLHQSSTQMFEEGSFLRRKRRF 561
MPRP + +Y D KPPYSY++L MAI SSP KM+ LSEIYKFI D FP+YR+++ +WQNSLRHNLSFNDCF+KI + DQ GKGS+W LH S MFE GSFLRR++RF
Sbjct: 1 MPRPGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRHNLSFNDCFIKIPRRPDQP-GKGSFWALHPSCGDMFENGSFLRRRKRF 109
The following BLAST results are available for this feature:
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