TCONS_00068259-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068259-protein
Unique NameTCONS_00068259-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length245

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068259-protein ID=TCONS_00068259-protein|Name=TCONS_00068259-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MPRPRKTSYGDDKPPYSYVALCVMAIDSSPTKMMTLSEIYKFITDNFPFY
RKSSNKWQNSLRHNLSFNDCFVKISKSNDQSGGKGSYWTLHQSSTQMFEE
GSFLRRKRRFHDKNTHSNSVELEERLIDNTDSSHKTNHRRSPSAEKISTN
QRRHSDPQPNLNNTSPTRREIRTASAPYTSFTIDSILSDNKKDETNFSRS
SPHITSLEGNVLSRTDSSRVAWNRPQPMNYKYRHSFDSFQNMHDI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042605XLOC_042605Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068259TCONS_00068259Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001766Fork_head_dom
IPR011991WHTH_DNA-bd_dom
IPR030456TF_fork_head_CS_2
IPR018122TF_fork_head_CS_1
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001766Fork head domainPRINTSPR00053FORKHEADcoord: 57..74
score: 75.44
coord: 34..51
score: 57.23
coord: 13..26
score: 66.5
IPR001766Fork head domainSMARTSM00339forkneu4coord: 11..102
e-value: 3.5E-52
score: 189.3
IPR001766Fork head domainPFAMPF00250Forkheadcoord: 13..98
e-value: 7.5E-36
score: 122.2
IPR001766Fork head domainPROSITEPS50039FORK_HEAD_3coord: 13..108
score: 36.396
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 2..101
e-value: 1.5E-36
score: 124.1
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 12..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..176
NoneNo IPR availableCDDcd00059FHcoord: 13..91
e-value: 8.94477E-42
score: 138.071
IPR030456Fork head domain conserved site 2PROSITEPS00658FORK_HEAD_2coord: 57..63
IPR018122Fork head domain conserved site1PROSITEPS00657FORK_HEAD_1coord: 13..26

Blast
[Close]
BLAST of TCONS_00068259-protein vs. Swiss-Prot (Human)
Match: FOXB1 (Forkhead box protein B1 OS=Homo sapiens GN=FOXB1 PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 6.288e-50
Identity = 72/110 (65.45%), Postives = 87/110 (79.09%), Query Frame = 0 
Query:    1 MPRPRKTSYGDDKPPYSYVALCVMAIDSSPTKMMTLSEIYKFITDNFPFYRKSSNKWQNSLRHNLSFNDCFVKISKSNDQSGGKGSYWTLHQSSTQMFEEGSFLRRKRRF 110
            MPRP + +Y D KPPYSY++L  MAI SSP KM+ LSEIYKFI D FP+YR+++ +WQNSLRHNLSFNDCF+KI +  DQ  GKGS+W LH S   MFE GSFLRR++RF
Sbjct:    1 MPRPGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRHNLSFNDCFIKIPRRPDQP-GKGSFWALHPSCGDMFENGSFLRRRKRF 109
The following BLAST results are available for this feature:
BLAST of TCONS_00068259-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FOXB16.288e-5065.45Forkhead box protein B1 OS=Homo sapiens GN=FOXB1 P... [more]
back to top