TCONS_00068246 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068246
Unique NameTCONS_00068246
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length561

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068246 ID=TCONS_00068246|Name=TCONS_00068246|organism=Clytia hemisphaerica|type=transcript|length=561bp
CTTGTTTTAATATcctcatttcaatcaaaaagcTTTGGAAGTTTGTTGAC
ACCCATCACATTGCTCATCTTTAAACCAGTGTAAATCAGGCATCATGGGT
TTCTTAATGTTCGTCAACCCACGCTCAATCTCCTCTTTGGTAAACACTCC
AGCTACGTCCATTTGCGCCACGTAAAACGGTAGTCCTTTCACGTAACTGA
CGCCGCACCCGATCTTTGAAGCGCCTGCCCATACTACTTGTTGAAAGCAA
CCAACTTTGTTATTACCAACCGCCTTATATTGTTCCCAGTCAAAGTTTCT
CTCCTGGTCATGCCATGTTTTCACCACCGTTTTCCACGAGGGGAAGATAT
TTCCCCATGCCCAGCACTCCCCACCTTCGCCGGTCTTTCCCCATATTGAG
GTATCAAGGACCCCATTATCGGCCCAATGTTGTGCTTGTACGGCCAACAT
GGGATCAAAGGTCAACATACTGACATTATGGTTCATTCGATATTTGTTGT
GATAAATGAGGCATTCTTCCTGACATTCGAAATCACATTCGCATATAACG
TTTCTTATCAT
Run BLAST on NCBI

transcript from alignment at scaffold_482:43967..44527+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068246 ID=TCONS_00068246|Name=TCONS_00068246|organism=Clytia hemisphaerica|type=transcript|length=561bp|location=Sequence derived from alignment at scaffold_482:43967..44527+ (Clytia hemisphaerica)
CTTGTTTTAATATcctcatttcaatcaaaaagcTTTGGAAGTTTGTTGAC
ACCCATCACATTGCTCATCTTTAAACCAGTGTAAATCAGGCATCATGGGT
TTCTTAATGTTCGTCAACCCACGCTCAATCTCCTCTTTGGTAAACACTCC
AGCTACGTCCATTTGCGCCACGTAAAACGGTAGTCCTTTCACGTAACTGA
CGCCGCACCCGATCTTTGAAGCGCCTGCCCATACTACTTGTTGAAAGCAA
CCAACTTTGTTATTACCAACCGCCTTATATTGTTCCCAGTCAAAGTTTCT
CTCCTGGTCATGCCATGTTTTCACCACCGTTTTCCACGAGGGGAAGATAT
TTCCCCATGCCCAGCACTCCCCACCTTCGCCGGTCTTTCCCCATATTGAG
GTATCAAGGACCCCATTATCGGCCCAATGTTGTGCTTGTACGGCCAACAT
GGGATCAAAGGTCAACATACTGACATTATGGTTCATTCGATATTTGTTGT
GATAAATGAGGCATTCTTCCTGACATTCGAAATCACATTCGCATATAACG
TTTCTTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042599XLOC_042599Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068246-exon-scaffold_482-1491911889:43967..44527TCONS_00068246-exon-scaffold_482-1491911889:43967..44527Clytia hemisphaericaexon
TCONS_00068246-exon-scaffold_482-1510915933:43967..44527TCONS_00068246-exon-scaffold_482-1510915933:43967..44527Clytia hemisphaericaexon
TCONS_00068246-exon-scaffold_482-1575043694:43967..44527TCONS_00068246-exon-scaffold_482-1575043694:43967..44527Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:43967..44527 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	11.9825	12.2368	1.78167	1.38368	4.90748	2.91419	3.0035	1.78151	2.20668	5.0591	5.77267	2.5293	0.0372999	0	0.555567	1.42092	0	0.297926	0.668901	1.58366	1.12251	0.297454	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068246 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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