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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068239 ID=TCONS_00068239|Name=TCONS_00068239|organism=Clytia hemisphaerica|type=transcript|length=2933bpRun BLAST on NCBI transcript from alignment at scaffold_482:17409..43128+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068239 ID=TCONS_00068239|Name=TCONS_00068239|organism=Clytia hemisphaerica|type=transcript|length=25720bp|location=Sequence derived from alignment at scaffold_482:17409..43128+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00068239 vs. Swiss-Prot (Human)
Match: MCM9 (DNA helicase MCM9 OS=Homo sapiens GN=MCM9 PE=1 SV=4) HSP 1 Score: 772.311 bits (1993), Expect = 0.000e+0 Identity = 376/645 (58.29%), Postives = 493/645 (76.43%), Query Frame = 2
Query: 140 VEHVFHTFLRQHCENEVMEILNAENELEHYSLHVNALELFDMNMLISTXXXXXXXXXXXXFERAAFKVQRECLRDLVPNESQYSMSVKTNCHVRLSNLPICPELTRNRLPQSEDVGTFLAFSGTVIRCSIAKLLEYERQFMCNKCRHVFTVEVEFEQNYNLPTPTSCPSSDGCNSYKFTEMKD-GKGPSKCKDYQELKVQEQVQRLDVGTIPRSIVVIMEDDLVDKCKPGDDVTVSGVVLRRWQNVYQDTRCQIEIVIKASDVIISNDQRSSVTMTDQHXXXXXXXXXXXXHSPLKGRNEILSGFCPQVYGLYVVKLAVTIALIGGVQRVKESGTRIRGESHLLLVGDPGTGKSQFLKYAAKVMPRSVLTTGIGSTSAGLTVTAVKDSGEWQLEAGALVLADGGICCIDEFNSIREHDRTSIHEAMEQQTISVAKAGLVCKLNTRTTILAATNPKGKYDRHESVSVNVALASPLLSRFDVVLVLIDKQNEDWDRIISNFILRRR-RPTASIDFWSLDRMQAYFSFVKRKAPTLSEDSMRILRAYYQGQRSADLRNAARTTIRLLESMIRISEAHARLMFREEVTIQDAVMAVCIMECSMQNTALLQGLMNPLHTSFPKDADAEYIDQATVILNKLKLNDILEKVL 2068
V VF +++ ++ +N+++ IL +E HY + VNA+ LF+ NM I P ++L +F+ A ++R L L ++S+K N H R+S LP+CPEL R +P+++DVG FL+ +GTVIR S+ K+LE+ER +MCNKC+HVF ++ +FEQ Y P+SCPS + C+S KFT + P++C+DYQE+K+QEQVQRL VG+IPRS+ VI+EDDLVD CK GDD+T+ G+V++RW+ QD RC++EIV+KA+ + ++N+Q S + M ++ ++EFE FWE + P GRN IL+ CPQV+G+Y+VKLAV + L GG+QR +GTR+RGESHLLLVGDPGTGKSQFLKYAAK+ PRSVLTTGIGSTSAGLTVTAVKDSGEW LEAGALVLAD G+CCIDEFNS++EHDRTSIHEAMEQQTISVAKAGLVCKLNTRTTILAATNPKG+YD ESVSVN+AL SPLLSRFD++LVL+D +NEDWDRIIS+FIL + P+ S WS+++M+ YF ++ PTLS+ ++L YYQ QR +D RNAARTTIRLLES+IR++EAHARLMFR+ VT++DA+ V +ME SMQ ALL G+ N LHTSFP++ +Y Q +IL KL+L +L + L
Sbjct: 9 VGQVFESYVSEYHKNDILLILKERDEDAHYPVVVNAMTLFETNMEIGEYFNMFPSEVLTIFDSA---LRRSALTILQSLSQPEAVSMKQNLHARISGLPVCPELVREHIPKTKDVGHFLSVTGTVIRTSLVKVLEFERDYMCNKCKHVFVIKADFEQYYTFCRPSSCPSLESCDSSKFTCLSGLSSSPTRCRDYQEIKIQEQVQRLSVGSIPRSMKVILEDDLVDSCKSGDDLTIYGIVMQRWKPFQQDVRCEVEIVLKANYIQVNNEQSSGIIMDEEVQKEFEDFWEYYKSDPFAGRNVILASLCPQVFGMYLVKLAVAMVLAGGIQRTDATGTRVRGESHLLLVGDPGTGKSQFLKYAAKITPRSVLTTGIGSTSAGLTVTAVKDSGEWNLEAGALVLADAGLCCIDEFNSLKEHDRTSIHEAMEQQTISVAKAGLVCKLNTRTTILAATNPKGQYDPQESVSVNIALGSPLLSRFDLILVLLDTKNEDWDRIISSFILENKGYPSKSEKLWSMEKMKTYFCLIRNLQPTLSDVGNQVLLRYYQMQRQSDCRNAARTTIRLLESLIRLAEAHARLMFRDTVTLEDAITVVSVMESSMQGGALLGGV-NALHTSFPENPGEQYQRQCELILEKLELQSLLSEEL 649 The following BLAST results are available for this feature:
BLAST of TCONS_00068239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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