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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068237 ID=TCONS_00068237|Name=TCONS_00068237|organism=Clytia hemisphaerica|type=transcript|length=2392bp
aatacaccgtttaggagtgtcgactgcgcacgcgtcaatccaattttcca
ttgttttgattttagcgatcacggaaaattcactctcctccgtaaaaaaa
cggtaggtaatgttgaaaatatgacgttttactTCTTACTTATCTGTATG
TCTTAACTTTTTCTGCTAATTGCTTTGTTTATTAGTTTAAAGCTGATGTC
ATTTCCATTAGGGGTTTTACATCGGCTGGCCTTTTAATTGTCACTAATTA
TTTTACTGTAGTGAAGTGTGTAATTTTTCCTTAGGCTTTTTATTATGAAG
ATAGTACTCTATGAGTGAAGTCACTTGGTGTGTCTGATTTTTAACAGGTT
ATGGGCTCAGACACAATACAGCTTTTATAGAGTACTGGAATATTTTTGTA
ATCTGGTTTTACAAACATGGCGTCTGAAGATTTTTCATTTAAGGTTGAAA
AATTGACCGCTGAGAACTACCATTCATGGAAGTTTAATATGAAAATGTAT
CTAATCGGAAAAGACTTGTGGGATATAGTCAACGGTACAGAAACTTTGAA
TGGAGATGCGACTGAGGCTGACaaacgaaaatttaaaaaacgagAAAACC
AAGCCCTGGCTGCGATTTGTCTCGGGATTGCAACGAACTTGCAAATTTAT
GTTCGATCCGCCGCAACCGCCACAGCTGCATGGGAAAATCTTGAGAAACA
TTTTCAGCAAAAGACTCTTTCGAAAAAGATTTATTACCGCCGGAAATTAT
ACTCCGCACGGATGGAGAAAGGACAAGACATGACCGAACACATTAACCAA
ATCAAAACGTTAGGGGAGCATTTGGAAGCCATCGACAATGCAATTGCCGA
GAAAGATCTTGTGATCCTTTTGATCAGCAGTTTACCGGACGACTACAATT
ATCTAATTACCGCTTTAGAGACAATCGCGGATGATGACTTGACATGGGAT
TACGTTCGCGACCGTTTAATCCACGAAAGCGAGAAGAAGTCAGAGAAAAG
CCCAACATCACCTGAAGCTCTGATCTCAAAGCTAGacaaaaagactttga
aatgtCACTATTGCAAAAAGACTGGACACTTTGCGCGAGAATGTTACaag
aagaaaaatgatcttAAAAGGAAAGAAGGTCAAGCCAAACTCGCAAAAGA
TGAAGCCGTATCTGATGTAGAAGCAAATTCCGAACTCGCTTTAAAATCAT
CGAATCGAATCGAAGACAAAAATTGGTGGATAGACTCTGGCGCTACCCAA
CATATGACGCCCCAAAAAGAAAGTATCGAAAATTATGTTGCTTTTAAAAA
ACCTATAACAGTGAGACTTGCTGATGAGAGCATTTTATACTCTTATGGAA
AAGGCGATGTACATTTGACAGTTAAGGATACGACTGAGAAagttaaaatt
gttttaaaagatGTTCTTTTTGTACCGAAAATCCAAAACAAGCTTTTTTC
CCTACCGGCTGTTACCGAAAAAGGATATATCGTTGATTTCCAGGGAGACT
CTTGCGGAATATCCATCGAAGGAAAACGTTATAGCGTCGGAAAGAAACAC
GGTAAACTTTTTAAACTGAACACGATAAATTCTGATCATACTTGCTATAT
TGGAAACGCAATGGACGAAATCGATTTATGGCACCAACGATATGATCATC
TCGGCTACGAcaacttaaaattactgaacaAGAAGGAAATGGTCAACGGC
CTTGATTTCGACTTGAAGGAGACAGTCAATCGAAACTGTGAAGGTTGCGC
GATGGGGAAGCAACATCGACAACCGTTCCCGAAGAAATCGACAAACACCA
CAAAGGGATTACTTGAATTGATTCACAGTGATGTTTGTGGTCCAATGGAT
GTACCTTCAGTGGGAGGTTCCAGGTATTTCGTTACGTTTATCGACGATTA
CTCCAGATATACGACTGTTTATATGATGAAGCATAAATCAGAAGTTGGCT
AAATTTACCGAATTTGTAAATCTTCTCGAGAATCGAACGGGACTGAAAGT
TAAACGGCTGAACGTAGAGAACCAAACAATCCAACGTTTACGTTCTGATA
ATGGTGGTGAATATACGTCGACCGAATTCGCAAGTTTTTGCACCGACCGT
GGAATCTCGCGTGAACCAACTATACCGTATTCTCCTCAACAGAATGGAGT
TCCTGAACGTATGAATCGAACTCTTTTAGAAACTGCACGGTCGATGTTGC
ATCACGCTCAGAAACCGATTAAATTTTGGGCTGAGGCTATTTCGACTGCT
TGCTACGTCCGAAATCGTAGTCCAACAGCATTTCTGAAGGAGACCACACC
TTATGAAATATGGCACCGAAAGAAACCGGATGTGAGTAATTTGAAAGTTT
TCGGATGTAAGTCCTACGTACACGTTCCAGATACCAAACGNN Run BLAST on NCBI protein sequence of TCONS_00068237-protein >TCONS_00068237-protein ID=TCONS_00068237-protein|Name=TCONS_00068237-protein|organism=Clytia hemisphaerica|type=polypeptide|length=511bp
MASEDFSFKVEKLTAENYHSWKFNMKMYLIGKDLWDIVNGTETLNGDATE
ADKRKFKKRENQALAAICLGIATNLQIYVRSAATATAAWENLEKHFQQKT
LSKKIYYRRKLYSARMEKGQDMTEHINQIKTLGEHLEAIDNAIAEKDLVI
LLISSLPDDYNYLITALETIADDDLTWDYVRDRLIHESEKKSEKSPTSPE
ALISKLDKKTLKCHYCKKTGHFARECYKKKNDLKRKEGQAKLAKDEAVSD
VEANSELALKSSNRIEDKNWWIDSGATQHMTPQKESIENYVAFKKPITVR
LADESILYSYGKGDVHLTVKDTTEKVKIVLKDVLFVPKIQNKLFSLPAVT
EKGYIVDFQGDSCGISIEGKRYSVGKKHGKLFKLNTINSDHTCYIGNAMD
EIDLWHQRYDHLGYDNLKLLNKKEMVNGLDFDLKETVNRNCEGCAMGKQH
RQPFPKKSTNTTKGLLELIHSDVCGPMDVPSVGGSRYFVTFIDDYSRYTT
VYMMKHKSEVG Run BLAST on NCBI transcript from alignment at scaffold_481:108576..110967 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068237 ID=TCONS_00068237|Name=TCONS_00068237|organism=Clytia hemisphaerica|type=transcript|length=2392bp|location=Sequence derived from alignment at scaffold_481:108576..110967 (Clytia hemisphaerica)
NNCGTTTGGTATCTGGAACGTGTACGTAGGACTTACATCCGAAAACTTTC
AAATTACTCACATCCGGTTTCTTTCGGTGCCATATTTCATAAGGTGTGGT
CTCCTTCAGAAATGCTGTTGGACTACGATTTCGGACGTAGCAAGCAGTCG
AAATAGCCTCAGCCCAAAATTTAATCGGTTTCTGAGCGTGATGCAACATC
GACCGTGCAGTTTCTAAAAGAGTTCGATTCATACGTTCAGGAACTCCATT
CTGTTGAGGAGAATACGGTATAGTTGGTTCACGCGAGATTCCACGGTCGG
TGCAAAAACTTGCGAATTCGGTCGACGTATATTCACCACCATTATCAGAA
CGTAAACGTTGGATTGTTTGGTTCTCTACGTTCAGCCGTTTAACTTTCAG
TCCCGTTCGATTCTCGAGAAGATTTACAAATTCGGTAAATTTAGCCAACT
TCTGATTTATGCTTCATCATATAAACAGTCGTATATCTGGAGTAATCGTC
GATAAACGTAACGAAATACCTGGAACCTCCCACTGAAGGTACATCCATTG
GACCACAAACATCACTGTGAATCAATTCAAGTAATCCCTTTGTGGTGTTT
GTCGATTTCTTCGGGAACGGTTGTCGATGTTGCTTCCCCATCGCGCAACC
TTCACAGTTTCGATTGACTGTCTCCTTCAAGTCGAAATCAAGGCCGTTGA
CCATTTCCTTCTtgttcagtaattttaagttgTCGTAGCCGAGATGATCA
TATCGTTGGTGCCATAAATCGATTTCGTCCATTGCGTTTCCAATATAGCA
AGTATGATCAGAATTTATCGTGTTCAGTTTAAAAAGTTTACCGTGTTTCT
TTCCGACGCTATAACGTTTTCCTTCGATGGATATTCCGCAAGAGTCTCCC
TGGAAATCAACGATATATCCTTTTTCGGTAACAGCCGGTAGGGAAAAAAG
CTTGTTTTGGATTTTCGGTACAAAAAGAACatcttttaaaacaattttaa
ctTTCTCAGTCGTATCCTTAACTGTCAAATGTACATCGCCTTTTCCATAA
GAGTATAAAATGCTCTCATCAGCAAGTCTCACTGTTATAGGTTTTTTAAA
AGCAACATAATTTTCGATACTTTCTTTTTGGGGCGTCATATGTTGGGTAG
CGCCAGAGTCTATCCACCAATTTTTGTCTTCGATTCGATTCGATGATTTT
AAAGCGAGTTCGGAATTTGCTTCTACATCAGATACGGCTTCATCTTTTGC
GAGTTTGGCTTGACCTTCTTTCCTTTTaagatcatttttcttcttGTAAC
ATTCTCGCGCAAAGTGTCCAGTCTTTTTGCAATAGTGacatttcaaagtc
tttttgtCTAGCTTTGAGATCAGAGCTTCAGGTGATGTTGGGCTTTTCTC
TGACTTCTTCTCGCTTTCGTGGATTAAACGGTCGCGAACGTAATCCCATG
TCAAGTCATCATCCGCGATTGTCTCTAAAGCGGTAATTAGATAATTGTAG
TCGTCCGGTAAACTGCTGATCAAAAGGATCACAAGATCTTTCTCGGCAAT
TGCATTGTCGATGGCTTCCAAATGCTCCCCTAACGTTTTGATTTGGTTAA
TGTGTTCGGTCATGTCTTGTCCTTTCTCCATCCGTGCGGAGTATAATTTC
CGGCGGTAATAAATCTTTTTCGAAAGAGTCTTTTGCTGAAAATGTTTCTC
AAGATTTTCCCATGCAGCTGTGGCGGTTGCGGCGGATCGAACATAAATTT
GCAAGTTCGTTGCAATCCCGAGACAAATCGCAGCCAGGGCTTGGTTTTct
cgttttttaaattttcgtttGTCAGCCTCAGTCGCATCTCCATTCAAAGT
TTCTGTACCGTTGACTATATCCCACAAGTCTTTTCCGATTAGATACATTT
TCATATTAAACTTCCATGAATGGTAGTTCTCAGCGGTCAATTTTTCAACC
TTAAATGAAAAATCTTCAGACGCCATGTTTGTAAAACCAGATTACAAAAA
TATTCCAGTACTCTATAAAAGCTGTATTGTGTCTGAGCCCATAACCTGTT
AAAAATCAGACACACCAAGTGACTTCACTCATAGAGTACTATCTTCATAA
TAAAAAGCCTAAGGAAAAATTACACACTTCACTACAGTAAAATAATTAGT
GACAATTAAAAGGCCAGCCGATGTAAAACCCCTAATGGAAATGACATCAG
CTTTAAACTAATAAACAAAGCAATTAGCAGAAAAAGTTAAGACATACAGA
TAAGTAAGAagtaaaacgtcatattttcaacattacctaccgttttttta
cggaggagagtgaattttccgtgatcgctaaaatcaaaacaatggaaaat
tggattgacgcgtgcgcagtcgacactcctaaacggtgtatt Coding sequence (CDS) from alignment at scaffold_481:108576..110967 >TCONS_00068237 ID=TCONS_00068237|Name=TCONS_00068237|organism=Clytia hemisphaerica|type=CDS|length=1536bp|location=Sequence derived from alignment at scaffold_481:108576..110967 (Clytia hemisphaerica)
TTAGCCAACTTCTGATTTATGCTTCATCATATAAACAGTCGTATATCTGG
AGTAATCGTCGATAAACGTAACGAAATACCTGGAACCTCCCACTGAAGGT
ACATCCATTGGACCACAAACATCACTGTGAATCAATTCAAGTAATCCCTT
TGTGGTGTTTGTCGATTTCTTCGGGAACGGTTGTCGATGTTGCTTCCCCA
TCGCGCAACCTTCACAGTTTCGATTGACTGTCTCCTTCAAGTCGAAATCA
AGGCCGTTGACCATTTCCTTCTtgttcagtaattttaagttgTCGTAGCC
GAGATGATCATATCGTTGGTGCCATAAATCGATTTCGTCCATTGCGTTTC
CAATATAGCAAGTATGATCAGAATTTATCGTGTTCAGTTTAAAAAGTTTA
CCGTGTTTCTTTCCGACGCTATAACGTTTTCCTTCGATGGATATTCCGCA
AGAGTCTCCCTGGAAATCAACGATATATCCTTTTTCGGTAACAGCCGGTA
GGGAAAAAAGCTTGTTTTGGATTTTCGGTACAAAAAGAACatcttttaaa
acaattttaactTTCTCAGTCGTATCCTTAACTGTCAAATGTACATCGCC
TTTTCCATAAGAGTATAAAATGCTCTCATCAGCAAGTCTCACTGTTATAG
GTTTTTTAAAAGCAACATAATTTTCGATACTTTCTTTTTGGGGCGTCATA
TGTTGGGTAGCGCCAGAGTCTATCCACCAATTTTTGTCTTCGATTCGATT
CGATGATTTTAAAGCGAGTTCGGAATTTGCTTCTACATCAGATACGGCTT
CATCTTTTGCGAGTTTGGCTTGACCTTCTTTCCTTTTaagatcatttttc
ttcttGTAACATTCTCGCGCAAAGTGTCCAGTCTTTTTGCAATAGTGaca
tttcaaagtctttttgtCTAGCTTTGAGATCAGAGCTTCAGGTGATGTTG
GGCTTTTCTCTGACTTCTTCTCGCTTTCGTGGATTAAACGGTCGCGAACG
TAATCCCATGTCAAGTCATCATCCGCGATTGTCTCTAAAGCGGTAATTAG
ATAATTGTAGTCGTCCGGTAAACTGCTGATCAAAAGGATCACAAGATCTT
TCTCGGCAATTGCATTGTCGATGGCTTCCAAATGCTCCCCTAACGTTTTG
ATTTGGTTAATGTGTTCGGTCATGTCTTGTCCTTTCTCCATCCGTGCGGA
GTATAATTTCCGGCGGTAATAAATCTTTTTCGAAAGAGTCTTTTGCTGAA
AATGTTTCTCAAGATTTTCCCATGCAGCTGTGGCGGTTGCGGCGGATCGA
ACATAAATTTGCAAGTTCGTTGCAATCCCGAGACAAATCGCAGCCAGGGC
TTGGTTTTctcgttttttaaattttcgtttGTCAGCCTCAGTCGCATCTC
CATTCAAAGTTTCTGTACCGTTGACTATATCCCACAAGTCTTTTCCGATT
AGATACATTTTCATATTAAACTTCCATGAATGGTAGTTCTCAGCGGTCAA
TTTTTCAACCTTAAATGAAAAATCTTCAGACGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068237-exon-scaffold_481-1491911889:108576..110967 | TCONS_00068237-exon-scaffold_481-1491911889:108576..110967 | Clytia hemisphaerica | exon |
| TCONS_00068237-exon-scaffold_481-1510915933:108576..110967 | TCONS_00068237-exon-scaffold_481-1510915933:108576..110967 | Clytia hemisphaerica | exon |
| TCONS_00068237-exon-scaffold_481-1575043694:108576..110967 | TCONS_00068237-exon-scaffold_481-1575043694:108576..110967 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_481 | supercontig | scaffold_481:108576..110967 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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