TCONS_00068237-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068237-protein
Unique NameTCONS_00068237-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length511

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068237-protein ID=TCONS_00068237-protein|Name=TCONS_00068237-protein|organism=Clytia hemisphaerica|type=polypeptide|length=511bp
MASEDFSFKVEKLTAENYHSWKFNMKMYLIGKDLWDIVNGTETLNGDATE
ADKRKFKKRENQALAAICLGIATNLQIYVRSAATATAAWENLEKHFQQKT
LSKKIYYRRKLYSARMEKGQDMTEHINQIKTLGEHLEAIDNAIAEKDLVI
LLISSLPDDYNYLITALETIADDDLTWDYVRDRLIHESEKKSEKSPTSPE
ALISKLDKKTLKCHYCKKTGHFARECYKKKNDLKRKEGQAKLAKDEAVSD
VEANSELALKSSNRIEDKNWWIDSGATQHMTPQKESIENYVAFKKPITVR
LADESILYSYGKGDVHLTVKDTTEKVKIVLKDVLFVPKIQNKLFSLPAVT
EKGYIVDFQGDSCGISIEGKRYSVGKKHGKLFKLNTINSDHTCYIGNAMD
EIDLWHQRYDHLGYDNLKLLNKKEMVNGLDFDLKETVNRNCEGCAMGKQH
RQPFPKKSTNTTKGLLELIHSDVCGPMDVPSVGGSRYFVTFIDDYSRYTT
VYMMKHKSEVG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042597XLOC_042597Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068237TCONS_00068237Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR025724GAG-pre-integrase_dom
IPR012337RNaseH-like_dom
IPR025314DUF4219
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 212..228
e-value: 0.0041
score: 25.9
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 186..218
e-value: 2.4E-4
score: 20.4
coord: 219..398
e-value: 3.1E-4
score: 20.0
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 212..226
e-value: 3.9E-4
score: 20.3
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 212..226
score: 9.076
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 206..234
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 382..449
e-value: 5.6E-12
score: 45.2
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 457..510
e-value: 7.4E-6
score: 25.2
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 464..508
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 56..193
e-value: 1.3E-37
score: 128.5
IPR025314Domain of unknown function DUF4219PFAMPF13961DUF4219coord: 13..39
e-value: 9.4E-10
score: 37.9

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068237-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top