TCONS_00068235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068235
Unique NameTCONS_00068235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length207

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068235 ID=TCONS_00068235|Name=TCONS_00068235|organism=Clytia hemisphaerica|type=transcript|length=207bp
AGCCGcacaacttgaaaaatttcgcaTAAATTTTGGCGTTCCCAAAAAGA
GCATAGGAAACGCACTCGGCAATCNAttggaaacacccctgtctcaacga
CAATAATTTAGCATAGTCCTTTATAGAATACATTTCGTGAAACaaagttt
ggccatgaaatttaagaagttttttctttatccttCTGGAGCATTCTTTT
TCCCGTG
Run BLAST on NCBI

transcript from alignment at scaffold_481:101084..101290

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068235 ID=TCONS_00068235|Name=TCONS_00068235|organism=Clytia hemisphaerica|type=transcript|length=207bp|location=Sequence derived from alignment at scaffold_481:101084..101290 (Clytia hemisphaerica)
CACGGGAAAAAGAATGCTCCAGaaggataaagaaaaaacttcttaaattt catggccaaactttGTTTCACGAAATGTATTCTATAAAGGACTATGCTAA ATTATTGtcgttgagacaggggtgtttccaaTNGATTGCCGAGTGCGTTT CCTATGCTCTTTTTGGGAACGCCAAAATTTAtgcgaaatttttcaagttg tgCGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042595XLOC_042595Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068235-exon-scaffold_481-1491911889:101084..101290TCONS_00068235-exon-scaffold_481-1491911889:101084..101290Clytia hemisphaericaexon
TCONS_00068235-exon-scaffold_481-1510915933:101084..101290TCONS_00068235-exon-scaffold_481-1510915933:101084..101290Clytia hemisphaericaexon
TCONS_00068235-exon-scaffold_481-1575043694:101084..101290TCONS_00068235-exon-scaffold_481-1575043694:101084..101290Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_481supercontigscaffold_481:101084..101290 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 2.03143 0 3.87337 12.6917 3.80818 3.1447 1.52616 3.00971 7.0129 3.12127 0.85537 0.917943 2.26166 2.31813 0 3.35131 1.45645 0 1.72718 1.57026 1.61733 5.77371 2.06554 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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