TCONS_00068231 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068231
Unique NameTCONS_00068231
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068231 ID=TCONS_00068231|Name=TCONS_00068231|organism=Clytia hemisphaerica|type=transcript|length=464bp
aaaaaagtataaaatgtaTGCTCATTTTTAGTTCGATCTTCATTTTCAGG
TTGATGCTCATTTTCAGGGTTGTGCTTCTTCCAAAAATCGTTCCAAGATT
TCTTTCTGTAATGCATGACAGCCATAAAATGCTTGCACGGAAGGTGTCGC
CTCTTCCAATCAAAGGATGTGCAACTTGGTAAATCGGTGTCGTTTCCAAA
GAAGACTTCATATGTAGTTGATGTTGTGAATGAGTGAACCTTGAAGTTCA
GGTGGTCAATTTCTGTTATCATGTCATCATTGGCGTCATCAATCACTGAT
TTTACCTTTGTTAGGCAATGTTGCACCAATTTCTTTGGCTGGCTGTTGAA
ACCAAGTTCATTGGCTTTCGCATCATAGATCTTGAATTTTTTGGACGATT
TCACATTCTTTAAGATGCAGCTGCAATGATAAATTGaatcaactttttga
gttttggcCTATCG
Run BLAST on NCBI

transcript from alignment at scaffold_481:57160..57623

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068231 ID=TCONS_00068231|Name=TCONS_00068231|organism=Clytia hemisphaerica|type=transcript|length=464bp|location=Sequence derived from alignment at scaffold_481:57160..57623 (Clytia hemisphaerica)
CGATAGgccaaaactcaaaaagttgattCAATTTATCATTGCAGCTGCAT
CTTAAAGAATGTGAAATCGTCCAAAAAATTCAAGATCTATGATGCGAAAG
CCAATGAACTTGGTTTCAACAGCCAGCCAAAGAAATTGGTGCAACATTGC
CTAACAAAGGTAAAATCAGTGATTGATGACGCCAATGATGACATGATAAC
AGAAATTGACCACCTGAACTTCAAGGTTCACTCATTCACAACATCAACTA
CATATGAAGTCTTCTTTGGAAACGACACCGATTTACCAAGTTGCACATCC
TTTGATTGGAAGAGGCGACACCTTCCGTGCAAGCATTTTATGGCTGTCAT
GCATTACAGAAAGAAATCTTGGAACGATTTTTGGAAGAAGCACAACCCTG
AAAATGAGCATCAACCTGAAAATGAAGATCGAACTAAAAATGAGCAtaca
ttttatactttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042591XLOC_042591Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068231-exon-scaffold_481-1491911889:57160..57623TCONS_00068231-exon-scaffold_481-1491911889:57160..57623Clytia hemisphaericaexon
TCONS_00068231-exon-scaffold_481-1510915933:57160..57623TCONS_00068231-exon-scaffold_481-1510915933:57160..57623Clytia hemisphaericaexon
TCONS_00068231-exon-scaffold_481-1575043694:57160..57623TCONS_00068231-exon-scaffold_481-1575043694:57160..57623Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_481supercontigscaffold_481:57160..57623 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.334915	0	0	0	0	0.0925299	0	0	0.0847809	0	0	0	0	0	0	0	0	0	0.399944	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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