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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068216 ID=TCONS_00068216|Name=TCONS_00068216|organism=Clytia hemisphaerica|type=transcript|length=929bp
aatttagattgaaaaaaatatatttaaaatccaaaaaatctaATAGTAAA
ATGATTCGTTTTATGGTATTAATAGTTGTCTTAACTGCTGGACTTGTTGT
TGGATCACCAGAGCTTCCCAAAGGAGATATTTGTTTGGAATGTGAACAAG
TTCTTGGTACAATCCATTTAATATTGTCAAACAATGAAACTGAAAGTGAA
GTATTGAGTGCAATGAACCAAGTCTGCAAAATGTTACCTCAAGAATATGC
TCCTATTTGTACAGAAGCTGTATCGTTATACGGACGACAACTGATTGATG
CTCTTGTCAAGTATTTTGCACAGCCACAACAATTTTGCAGTTTGATTGGG
CTATGCAACTCAACCAAGACAGCACAAAGAGAGGCTTTTGAGTTCCTGCA
AGATCTGAGAGCATATTATGCTCAAAAAGGagtcaaaatcttcaaagtca
AAACAGTTGGAATGTCGGATTGTGCTATTTGTGAATTTATCATGGACCTT
GTTCAAACAACAATGGCTGATAAACCTATGGTAGAATTCTTCAATGATGC
ATTGGTCAAATTGTGTGCTTATTTGCCAAAAGAGATCCAACCAGAATGTC
AGCAAATCATCACTGTCGATGAACCCCAGTGGTATGCTGAGTTTGTCAAG
AAGTATCTCGATCCTATCAATTTCTGCACTGGTGTTGAAGTTTGCCCAAA
AGTGTGAATCTTCATTTGAAATGAGTTATGACAACGCCAGGGTCAAGACA
AGCATTATTATAGTaagtgattttgaaatttcaaagaaGAGATCGATCAA
GGATTAATTTAATGTTTTAGTATTAGCAGGGTGGCCAGCGATACtggaaa
tacttgaaaatacttgaatatactggaaaaaaatattggtacttgattat
actggagtttttgaaaaaatgcccatttt Run BLAST on NCBI transcript from alignment at scaffold_480:88694..92438+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068216 ID=TCONS_00068216|Name=TCONS_00068216|organism=Clytia hemisphaerica|type=transcript|length=3745bp|location=Sequence derived from alignment at scaffold_480:88694..92438+ (Clytia hemisphaerica)
aatttagattgaaaaaaatatatttaaaatccaaaaaatctaATAGTAAA
ATGATTCGTTTTATGGTATTAATAGTTGTCTTAACTGCTGGACTTGTTGT
TGGATCACCAGAGCTTCCCAAAGGAGATATTTGTTTGGAATGTGAACAAG
TTCTTGGTACAATCCATTTAATATTGTCAAACAATGAAACTGAAAGTGAA
GTATTGAGTGCAATGAACCAAGTCTGCAAAATGTTACCTCAAGAATATGC
TCCTATTGTAAGTTTCCATATTTTCTCTGCACAATATGTTGTGGACACCT
TCTCAATATATATTGCTAGTACTTACTCAgcaatatgtaatagttatgtC
ACGTTACAGAGTacaatatttgaattttttttcgagttcagatttttcgt
aATATTTTCTGAGCTTTCAGGCGAGCCTTTTTTGAACGTGGTCTatattt
gtacggtacaatatgaaGTATAGCATTTATGTTCACGTGTTTAACCActc
agattgctcatatttttcaagttgacaatagattgtcaatatattgcctg
aaaatgattgtgtagtgtatgtagcccccTTGAGTTGAGGAACTTCTTAA
ACTAATGAcagatcattttattttgttgaaaatctaCTAAATCCTTTGAA
TCCCCTTTGAATCTAAAGTCATACACTTGTGACGTCATGTTTGCTTATCT
TGCAGTAGCAATGCAGAATATTTAACAAAATCTATCAAAAATGTTGTCCA
ATATTTTATGCCAAATCCCTCTTTTGAAGAACAACATAATTATTTATGGT
CCACCTCTAGGCAAAACGCACTGTCGGATATTTTTAGATATATCCGATAG
CAAAATATCTCTTCTGTAGCGGCGAACCTATAGAAAATAGTTTTTGATCA
AATGATTATTTAAATGTCACATataaaaaaagagataaaagtaacaaaaa
aagagaaaggaaattcgaacgttttgtaattaagagaaaaaacaacgaaa
ttgacatttttaaataagatagtaaaaacgttcgaaaatgtcataaaaag
aGTGAATGAAATAAGGAACAATTTAAATACTTTTCTGCTTAATTGGTGTA
CGATAAACCATATATTCAACGTGAAAAAGTCGAATATCGATAGATATGAA
atgagccctccgaatgcattcgggatgggtcctacccacgaatgAGCAGG
AATCgcggcgctgacagacactgtgacttgacagacgcgagctgccgagc
catggcgtataccatgacactcgaacgacagGGAGAGCGATGGTCACGCG
aggccgaaccttatgagtgccgcggcacgtcacaatgtctgtctaatcta
cccacactcttttatcagagtaatggtacccaatccccctcacatggcat
gggttgacccgggcgaaggtatattcacttgccaGGTGAATCGTAGAGAC
ACGGTGGGTATTGATCTCGGGCCTCCCAGGCgggagtcaaggatgataac
cactataTCAATACGCctaataattttagaacaaTCTTTGTTTCAATGAT
TTCTTTTACAGTAACAGACTTTAAATTATAATCACTCTGAAATTTGTCTG
ATGTCGTACGgtgaaaaatataatatttgtcTATATTTCAGTGTACAGAA
GCTGTATCGTTATACGGACGACAACTGATTGATGCTCTTGTCAAGTATTT
TGCACAGCCACAACAATTTTGCAGTTTGATTGGGCTATGCAACTCAACCA
AGACAGCACAAAGAGAGGCTTTTGAGTTCCTGCAAGATCTGAGAGCATAT
TATGCTCAAAAAGGagtcaaaatcttcaaagtcaAAACAGTTGGTAAGAT
TTTCAAttgattcttttgtttaagTTTATTTGATGATTCAACATCACTCT
TATGCGGTTGTTaacaactttctatttttttctatcAGCTGTTCCCGATA
CTAGTGATGATATTCTAGTAAAAGTATCTATATGGTCCCGGGtacgccac
aaaaaagtttctctctttaaaactaattttctcgaaatctaaaatttttt
aaagaaccattcctatcccattggaaagaagaaaaataagcttaaatttt
gatgggtcatttattgaatttggttcattagatcgaaagttatgctcaat
cgaataaaaaagttactttcagaaagtgctcaaaaacgttaaaaattgac
ctatcaaattaaacagaagcataattacatgatgcatcagtattttcgtt
ttaatcatcaaaaatgataattagttgtctaaatgaccttttgttatata
aaggaaagttgaattacattaaaaggaagaaaatttgtcgaaaaaagcca
aaaaatcttgtaaaattcagaaaaatacatcaaatatgggtttcgaggta
catagactttatccagtctacaaccaaaaatctgaagaaaatctcggtaa
aagtaaatcaaaatgattttgatgaacttttaaacccttttgacccatca
gtttcaaaatttatgtgttcaattactgaaaaatgttcttaatcatgtaa
agcctattgcgattgctagttttaaaataaaattttgataggtcgatttt
taacgttttcgggcactttctgaaagtaacttttttattcaattgagcat
gacttttgatctaatgaaccgaatttattaaacgacccatcaaaatttaa
gtttatctttcttctttccaatggaataggaatgattcttttaaaatttt
tcgatttcgagaaaatcagtttcaaagagagaaacttttttgtggcgcac
ccggtatttctTTCTACAAGGATCACGTGTATAAGCATACACAGACTCAG
TCTTAGGTACAATGGTTCTATTGTTTTAGAGCAATAAGAATTATTGTTTT
AGAACAATAGGAATGCTAAGCATGATCtgagcctgatataggggtagaca
cttgcttattaaataaaaattttggtgattggaagacaccgaaacgtcta
gaagtaaaatttttaaatcttatACAAATAAAATGGTTGAAGCCAAAAtt
ttggcaatatttttttttaatcaccaaTTTCCCAAATTTCAGGAATGTCG
GATTGTGCTATTTGTGAATTTATCATGGACCTTGTTCAAACAACAATGGC
TGATAAACCTATGGTAGAATTCTTCAATGATGCATTGGTCAAATTGTGTG
CTTATTTGCCAAAAGAGATCCAACCAGAATGTCAGCAAATCATCACTGTC
GATGAACCCCAGTGGTATGCTGAGTTTGTCAAGAAGTATCTCGATCCTAT
CAATTTCTGCACTGGTGTTGAAGTTTGCCCAAAAGTGTGAATCTTCATTT
GAAATGAGTTATGACAACGCCAGGTTAAGAAATAAACTCCTTTTCAATTC
AGATTTTCGATTTACttagttgttgtttttttttgttgtttttgcatTTT
GCATTTTGAGCTGTCCtgcattgcaatttttgtaatttaatttaTAATAA
TGTAAATTTAATATTGtcaaattttttagaatttccaaacattttttaCT
TTCAAGGGTCAAGACAAGCATTATTATAGTaagtgattttgaaatttcaa
agaaGAGATCGATCAAGGATTAATTTAATGTTTTAGTATTAGCAGGGTGG
CCAGCGATACtggaaatacttgaaaatacttgaatatactggaaaaaaat
attggtacttgattatactggagtttttgaaaaaatgcccatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068216-exon-scaffold_480-1491911889:88694..88950 | TCONS_00068216-exon-scaffold_480-1491911889:88694..88950 | Clytia hemisphaerica | exon |
| TCONS_00068216-exon-scaffold_480-1510915933:88694..88950 | TCONS_00068216-exon-scaffold_480-1510915933:88694..88950 | Clytia hemisphaerica | exon |
| TCONS_00068216-exon-scaffold_480-1575043694:88694..88950 | TCONS_00068216-exon-scaffold_480-1575043694:88694..88950 | Clytia hemisphaerica | exon |
| TCONS_00068216-exon-scaffold_480-1491911889:90335..90536 | TCONS_00068216-exon-scaffold_480-1491911889:90335..90536 | Clytia hemisphaerica | exon |
| TCONS_00068216-exon-scaffold_480-1510915933:90335..90536 | TCONS_00068216-exon-scaffold_480-1510915933:90335..90536 | Clytia hemisphaerica | exon |
| TCONS_00068216-exon-scaffold_480-1575043694:90335..90536 | TCONS_00068216-exon-scaffold_480-1575043694:90335..90536 | Clytia hemisphaerica | exon |
| TCONS_00068216-exon-scaffold_480-1491911889:91786..92066 | TCONS_00068216-exon-scaffold_480-1491911889:91786..92066 | Clytia hemisphaerica | exon |
| TCONS_00068216-exon-scaffold_480-1510915933:91786..92066 | TCONS_00068216-exon-scaffold_480-1510915933:91786..92066 | Clytia hemisphaerica | exon |
| TCONS_00068216-exon-scaffold_480-1575043694:91786..92066 | TCONS_00068216-exon-scaffold_480-1575043694:91786..92066 | Clytia hemisphaerica | exon |
| TCONS_00068216-exon-scaffold_480-1491911889:92250..92438 | TCONS_00068216-exon-scaffold_480-1491911889:92250..92438 | Clytia hemisphaerica | exon |
| TCONS_00068216-exon-scaffold_480-1510915933:92250..92438 | TCONS_00068216-exon-scaffold_480-1510915933:92250..92438 | Clytia hemisphaerica | exon |
| TCONS_00068216-exon-scaffold_480-1575043694:92250..92438 | TCONS_00068216-exon-scaffold_480-1575043694:92250..92438 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_480 | supercontig | scaffold_480:88694..92438 + |
Blast
The following BLAST results are available for this feature:
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