XLOC_042581 (gene) - C. hemisphaerica

Overview
NameXLOC_042581
Unique NameXLOC_042581
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_480:88694..95717+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042581 ID=XLOC_042581|Name=XLOC_042581|organism=Clytia hemisphaerica|type=gene|length=7024bp|location=Sequence derived from alignment at scaffold_480:88694..95717+ (Clytia hemisphaerica)
aatttagattgaaaaaaatatatttaaaatccaaaaaatctaATAGTAAA ATGATTCGTTTTATGGTATTAATAGTTGTCTTAACTGCTGGACTTGTTGT TGGATCACCAGAGCTTCCCAAAGGAGATATTTGTTTGGAATGTGAACAAG TTCTTGGTACAATCCATTTAATATTGTCAAACAATGAAACTGAAAGTGAA GTATTGAGTGCAATGAACCAAGTCTGCAAAATGTTACCTCAAGAATATGC TCCTATTGTAAGTTTCCATATTTTCTCTGCACAATATGTTGTGGACACCT TCTCAATATATATTGCTAGTACTTACTCAgcaatatgtaatagttatgtC ACGTTACAGAGTacaatatttgaattttttttcgagttcagatttttcgt aATATTTTCTGAGCTTTCAGGCGAGCCTTTTTTGAACGTGGTCTatattt gtacggtacaatatgaaGTATAGCATTTATGTTCACGTGTTTAACCActc agattgctcatatttttcaagttgacaatagattgtcaatatattgcctg aaaatgattgtgtagtgtatgtagcccccTTGAGTTGAGGAACTTCTTAA ACTAATGAcagatcattttattttgttgaaaatctaCTAAATCCTTTGAA TCCCCTTTGAATCTAAAGTCATACACTTGTGACGTCATGTTTGCTTATCT TGCAGTAGCAATGCAGAATATTTAACAAAATCTATCAAAAATGTTGTCCA ATATTTTATGCCAAATCCCTCTTTTGAAGAACAACATAATTATTTATGGT CCACCTCTAGGCAAAACGCACTGTCGGATATTTTTAGATATATCCGATAG CAAAATATCTCTTCTGTAGCGGCGAACCTATAGAAAATAGTTTTTGATCA AATGATTATTTAAATGTCACATataaaaaaagagataaaagtaacaaaaa aagagaaaggaaattcgaacgttttgtaattaagagaaaaaacaacgaaa ttgacatttttaaataagatagtaaaaacgttcgaaaatgtcataaaaag aGTGAATGAAATAAGGAACAATTTAAATACTTTTCTGCTTAATTGGTGTA CGATAAACCATATATTCAACGTGAAAAAGTCGAATATCGATAGATATGAA atgagccctccgaatgcattcgggatgggtcctacccacgaatgAGCAGG AATCgcggcgctgacagacactgtgacttgacagacgcgagctgccgagc catggcgtataccatgacactcgaacgacagGGAGAGCGATGGTCACGCG aggccgaaccttatgagtgccgcggcacgtcacaatgtctgtctaatcta cccacactcttttatcagagtaatggtacccaatccccctcacatggcat gggttgacccgggcgaaggtatattcacttgccaGGTGAATCGTAGAGAC ACGGTGGGTATTGATCTCGGGCCTCCCAGGCgggagtcaaggatgataac cactataTCAATACGCctaataattttagaacaaTCTTTGTTTCAATGAT TTCTTTTACAGTAACAGACTTTAAATTATAATCACTCTGAAATTTGTCTG ATGTCGTACGgtgaaaaatataatatttgtcTATATTTCAGTGTACAGAA GCTGTATCGTTATACGGACGACAACTGATTGATGCTCTTGTCAAGTATTT TGCACAGCCACAACAATTTTGCAGTTTGATTGGGCTATGCAACTCAACCA AGACAGCACAAAGAGAGGCTTTTGAGTTCCTGCAAGATCTGAGAGCATAT TATGCTCAAAAAGGagtcaaaatcttcaaagtcaAAACAGTTGGTAAGAT TTTCAAttgattcttttgtttaagTTTATTTGATGATTCAACATCACTCT TATGCGGTTGTTaacaactttctatttttttctatcAGCTGTTCCCGATA CTAGTGATGATATTCTAGTAAAAGTATCTATATGGTCCCGGGtacgccac aaaaaagtttctctctttaaaactaattttctcgaaatctaaaatttttt aaagaaccattcctatcccattggaaagaagaaaaataagcttaaatttt gatgggtcatttattgaatttggttcattagatcgaaagttatgctcaat cgaataaaaaagttactttcagaaagtgctcaaaaacgttaaaaattgac ctatcaaattaaacagaagcataattacatgatgcatcagtattttcgtt ttaatcatcaaaaatgataattagttgtctaaatgaccttttgttatata aaggaaagttgaattacattaaaaggaagaaaatttgtcgaaaaaagcca aaaaatcttgtaaaattcagaaaaatacatcaaatatgggtttcgaggta catagactttatccagtctacaaccaaaaatctgaagaaaatctcggtaa aagtaaatcaaaatgattttgatgaacttttaaacccttttgacccatca gtttcaaaatttatgtgttcaattactgaaaaatgttcttaatcatgtaa agcctattgcgattgctagttttaaaataaaattttgataggtcgatttt taacgttttcgggcactttctgaaagtaacttttttattcaattgagcat gacttttgatctaatgaaccgaatttattaaacgacccatcaaaatttaa gtttatctttcttctttccaatggaataggaatgattcttttaaaatttt tcgatttcgagaaaatcagtttcaaagagagaaacttttttgtggcgcac ccggtatttctTTCTACAAGGATCACGTGTATAAGCATACACAGACTCAG TCTTAGGTACAATGGTTCTATTGTTTTAGAGCAATAAGAATTATTGTTTT AGAACAATAGGAATGCTAAGCATGATCtgagcctgatataggggtagaca cttgcttattaaataaaaattttggtgattggaagacaccgaaacgtcta gaagtaaaatttttaaatcttatACAAATAAAATGGTTGAAGCCAAAAtt ttggcaatatttttttttaatcaccaaTTTCCCAAATTTCAGGAATGTCG GATTGTGCTATTTGTGAATTTATCATGGACCTTGTTCAAACAACAATGGC TGATAAACCTATGGTAGAATTCTTCAATGATGCATTGGTCAAATTGTGTG CTTATTTGCCAAAAGAGATCCAACCAGAATGTCAGCAAATCATCACTGTC GATGAACCCCAGTGGTATGCTGAGTTTGTCAAGAAGTATCTCGATCCTAT CAATTTCTGCACTGGTGTTGAAGTTTGCCCAAAAGTGTGAATCTTCATTT GAAATGAGTTATGACAACGCCAGGTTAAGAAATAAACTCCTTTTCAATTC AGATTTTCGATTTACttagttgttgtttttttttgttgtttttgcatTTT GCATTTTGAGCTGTCCtgcattgcaatttttgtaatttaatttaTAATAA TGTAAATTTAATATTGtcaaattttttagaatttccaaacattttttaCT TTCAAGGGTCAAGACAAGCATTATTATAGTaagtgattttgaaatttcaa agaaGAGATCGATCAAGGATTAATTTAATGTTTTAGTATTAGCAGGGTGG CCAGCGATACtggaaatacttgaaaatacttgaatatactggaaaaaaat attggtacttgattatactggagtttttgaaaaaatgcccatttttNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNCTCCAAAAAGTACTTGAATATACTTGATTTTC AATGACTAAAATCGCTGGCCACCCTGATTAGGATCCCTTCTTATGGCTCA TTGTTAgactttttgtaattctttttctattgtaatttttttttttttta attgttttgtttttgtttttaatgagaATTATTAAACGAGATTTGtactt tcaattttcagtgatgTTAAATAATACATaaaatttctacaatttttctt taaagtttaaagttgcATGTGCACTAATGAAGGGAATCAGTCAGATTTTt tatatattgaaaaaaactaaCCTCATTTGTCTAATGGAATTTGAGGCTAC AGAAAAACAACTTAGCCTAAAGTATGTTTGTTAAACAAAAAGCATCAAAT TTCGTAACAAGGTCTTCAAAGTTCCAGAAAAAAGCTACTCAATTATGATA CCAATTTAACAATTTCTTTTAGATAATCCACTAAatgaaaatcatgaaat caGCATTACTTGCTTACAATAACGATGCTCTGCCACGAAGACGATTTCTA GAAGATAATGTCAAAGTCGCACAACAAAAACCTTTTGTTGTAAACTGCAA GAGGAGGAAGGTCCCATGTTTCTTGGATGttataattaatgataaaaCTT TATCTCTCTATGAGTTgcaatataattatggaaataaTGGCGACGGTAGA AATCTTTACTTTAACTGCACTTGCTCACTTCACAACTTTGGTACCGGAGA AGTTGAGGTGATATGCTCTAAAACAATTTATCACTCATCAGCCGATTTTT TCAGTTATATTTTATGTAAGAATCGGTCACTGTGTATCTTTGCAACGCAC AACGAGAATAAAGGATCTATTGCATTGAGCTTTGGTATACCGAGTAAAGA GATTAAAAGGACATTGTTACATGACTTGAACTCGACCATTAAAGCTGAAG GTGAAATTACAGATTTTACCCTTGAACTATCTAcagataatgaaattttg tgcaTTATGGTGGAAAGCGCTAAAGAAGTGGAGATAGGGGAAgacatttt tgaagaaaatttttgtgatGCTCATTTTTTCAAATGTGATTTCTCAAAAG ATGATTGTCTCGCAttagaaaaaatgttttcttttgatgCAAGCCTTATT GGAGTATGTAGGAATGGACTAGTTTTCAATATCAGTGGAGACAAAATACT ATTATTTTCTGATAACGGAGTCATAATTTATTCTTTGAAATTGCAAAGTG TAATTGCCAGACAAGATATTGCAAACATTGTGGCTAATTTCGAATGGTCT CGTGATATAACTAAAGGTGAGATTTTAGTGAATTTTGCTAAAGGACAAAA CAACATCACTGTATATACCATCAACCACCAAGAGGAAAAATTGACTACTT TGACGTCAATCAATTATTCGGATTTTAtcccaaatgaaaatttttgtaaa cttgCTGAAGTTACTTCAGGGACATCTTTCATCGTATTGGCAGCCCGAAG TGTTTACTTGATCGACCCTTTCACTGGTCAAGTTGTACAAAGAATTATCC CCTACTTTGTCAGTTTTGATTGTTTCGTGAAACATGTAACATTAAATTGG TGTTCAAATGAAGTAGTTGTGTTTTATAGCGAGGATGATAATAAAATCTT TGGACaagttttcaaattgaaaacaAGACTGGTGGAACGACTGCTACATT CTGCACTTAAAGTTGTATTGTTGAACTATTCCATCAATGATTTGATACAA ATGAACTTACCAAAGTCGATCAAGGATAACTTTTTTAGATAACTATTAAT GATATTATTTTGATCACCTTTAACCATTACCATATCACCAAACTGTTTTT TTCCTTccatttgtttacattttgaagAACTAGATTACCTTGGGATAAAC TTCCCaataaaaatttgcaatttatgtttcattgtttttctttGTGATTT TTATGGCGAGGAATGAAATGTTAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00068216TCONS_00068216Clytia hemisphaericatranscript
TCONS_00068217TCONS_00068217Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00068217-proteinTCONS_00068217-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_480supercontigscaffold_480:88694..95717 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
355.23 375.13 366.63 358.96 21.75 18.73 40.87 40.62 83.16 71.69 63.78 56.28 47.86 38.09 67.57 69.82 64.93 68.21 49.23 69.28 63.12 58.51 160.57 149.52 32.03 31.32 75.41 55.33 146.14 135.84