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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068210 ID=TCONS_00068210|Name=TCONS_00068210|organism=Clytia hemisphaerica|type=transcript|length=1430bp
aaaaaagtaaacgcAGAACGTAAGAAGAAAGTAAGTAATGTTCTCTGCAA
GAATACAAATGGACATGTATAAAATCTTAATTTGTACCTTAATGATTTCC
CTTATCATTAATGGCACTCTTGCGCAAGAAATGCAACTTAACTCTCATTT
TCGcctggaaaaagaaaattacacCATTAAAAATGGCTCTCATATACCAT
CAGAAGAATTTGTTATCAAAGGCTCGGAAATTGAATGCTTGTTAAAATGT
CAACTCAATTATTTGGTGTGCTTCACTCTTCAAATTCTGAAGTTGGGTTC
AGCAAGCTGGTTGTGTCGATTTTACGACGTCGATTTCATGAAATTGAGTT
ATGAATCAAAAGAGGGGTCAATGGTTTATTCTACTACTGCACGAAGTTGT
TTAGAATGGTTGGAAAGAGGCTTCACATTGGATGGTGTGTATAAAATACT
GCCCGTTGGAGAAGAAAAGGAAGTCTACTGTGATATGACTGGTGGCGGTT
GGACAATGATTCAACGCCGATTAAACGGTGACATTGATTTCAATCGAGGT
TGGCAATCATACAAAGAAGGCTTTGGTGATGTCAATGGTGATTTTTGGAT
TGGTTTGGAAACCATTCGAGAAATGAGTGTGTTGTTGAACAACACTTTGA
TTCGAATTCAAGGTGAAAGTTTTAACGAAGATCGAAGATTTATCATTGCA
AAGGGATTCTACATCGAAGACGAACAAAAGAAATACAAATTGCATGCTGG
GACAATGATCAATGATGAATGGGATATCGGACATGATTGGACATATCATG
GTGGTTCAATGTTCACAACACGGGATGACGATAATGATAAAAAAGGTGGT
AGCAATTGTGCACAAAAATATCCTTGTGCTTGGTGGTATGTGAATTGTTA
TGCATTGAATGCTAACAGAGCACcagcaaaacaacaacaaacaacatATG
CAGACGGTATCAGCTGGCCCGCCTGGTTGGGCGATTTCCAATCGTTGAAA
ACCATAAATATGgcaataaagaaaatgaattgaATGTCTTATTGATGtat
tctaaaaagattttatttatataaattctgttcaacttttttttgaaaaa
tcatattAAGTTTGTATGTAAAATTTGTGTTTTATGTTCTAGTATGGTAT
TTTGCATTAGATTTTCATTCCAGAAACAGTCAATTGTCTCaagtttacat
tttatttcaattGCTAACACACCCTTTGTTAACCTATCCGTTCaccaaat
tttgaagaaaagttcAGATAGAGGCTCAGATTATTCAACATTCTTCAGAA
CGCTTTCCCAATAAAAAGAGTCAGAATTTCAACCAAGAGTTCACCGatac
ccagctggtacacaacattgtttccacGTTCATCTagcattcacaacgtc
catttaacgttggattaacgttgaaataac Run BLAST on NCBI protein sequence of TCONS_00068210-protein >TCONS_00068210-protein ID=TCONS_00068210-protein|Name=TCONS_00068210-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
MFSARIQMDMYKILICTLMISLIINGTLAQEMQLNSHFRLEKENYTIKNG
SHIPSEEFVIKGSEIECLLKCQLNYLVCFTLQILKLGSASWLCRFYDVDF
MKLSYESKEGSMVYSTTARSCLEWLERGFTLDGVYKILPVGEEKEVYCDM
TGGGWTMIQRRLNGDIDFNRGWQSYKEGFGDVNGDFWIGLETIREMSVLL
NNTLIRIQGESFNEDRRFIIAKGFYIEDEQKKYKLHAGTMINDEWDIGHD
WTYHGGSMFTTRDDDNDKKGGSNCAQKYPCAWWYVNCYALNANRAPAKQQ
QTTYADGISWPAWLGDFQSLKTINMAIKKMN Run BLAST on NCBI transcript from alignment at scaffold_480:40797..50784+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068210 ID=TCONS_00068210|Name=TCONS_00068210|organism=Clytia hemisphaerica|type=transcript|length=9988bp|location=Sequence derived from alignment at scaffold_480:40797..50784+ (Clytia hemisphaerica)
aaaaaagtaaacgcAGAACGTAAGAAGAAAGTAAGTAATGTTCTCTGCAA
GAATACAAATGGACATGTATAAAATCTTAATTTGTACCTTAATGATTTCC
CTTATCATTAATGGCACTCTTGCGCAAGAAATGCAACTTAACTCTCATTT
TCGcctggaaaaagaaaattacacCATTAAAAATGGCTCTCATATACCAT
CAGAAGAATTTGTTATCAAAGGCTCGGAAATTGAATGCTTGTTAAAATGT
CAACTCAATTATTTGGTGTGCTTCACTCTTCAAATTCTGAAGTTGGGTTC
AGCAAGCTGGTTGTGTCGATTTTACGACGTCGATTTCATGAAATTGAGTT
ATGAATCAAAAGAGGGGTCAATGGTTTATTCTACTACTGCACGAAGTTGT
TTAGAATGGTTGGAAAGAGGCTTCACATTGGATGGTGTGTATAAAATACT
GCCCGTTGGAGAAGAAAAGGAAGTCTACTGTGATATGACTGGTAAATAAA
GTTCCCATTAATTTTCTAGACTACACTATACAGAGCTTTTCATTGACTGA
ACAATTGAATAGCAAAGTGAGACTAAACCAAATACTGAAGgcgtattttc
aaatttctcatggCAATCAGAAGTGATGCCTCAAAATTTGCGTCGCATTT
TGGATGATGGATCGAGTTTAGCACTTCGTCGCATTTTACTTTATTCGAAT
TCTGGAGGTAAAAGTTAgtttcaatccagcgtttgtaTGAAAACTATGCA
TGTCGCGGAACTAAAGTAGGAGGGAGAAATGAGTTGCTTGAAGAAttaca
taccttatcgggggaaaaaatgtcgggggaaggtgacgaaattagtgctt
taaacgtcgaattacaagatcttttttcgagctagtgaaggagaCCATTT
CGGTAGGACAATTTAGTTgagtgaaagtgactaaattgtaaatttcgtcg
gggaaaagtaacgaaaatgcctctaggtgacgaaatttttccccgacgaa
aaataaaacccgactaaataaaactccgacattttgtTCCGCGATAAGGT
AGTAGATTCGCCTATAGCCTTCGACCTTGTTGAGCTATACCAACTAATCA
GTCGACTAAGGAAACAGAGTTTTCAATAAGAGCCCATTGTTCCTTTAACA
ATAGCAGATCTGGCATGCAATGAACCGCAAATCAAAGACAAGCAGACTCT
TATTCTCAAGATTTCGTATCGTTATAACCTGTTCGCTTGTGTGTTTTAGG
TGGCGGTTGGACAATGATTCAACACCGATTAAACGGTGACATTGATTTCA
ATCGAAGTTGGCAATCATACAAAGAAGGCTTTGGCGATGTCAATGGTGAT
TTTTGGATTGGTTTGGAAACCATTCGAGAAATGAGTGTGTTGTTGAACAA
CTCTTTGATTCGAATTCAAGGTGAAAGTTTTAACGGAGATCGAAGATTTA
TCATTGCAAAGGTAAAATAATTGGTTATTTGCATTCTTACTTATTCTGGC
GTTTTATTTCTAAGTATTCGACTGATTCTTAACGTTTAAAATGTCATCAG
AAGTATTTCNATTCTTACTTATTCTGGCGTTTTATTTCTAAGTATTCGAC
TGATTCTTAACGTTTAAAATGTCATCAGAAAGATTTTTTCCGTTTAATGA
ATAGGGATTCTGCATCGAAGACGAACAAAAGAAATACAAATTGCATTCTG
GGACAATGATCAATGATGAATGGAATATCGGAGGTGATTGGACATATCAT
GATGGTTTAAAGTTCACAACACGGGATGACGATAACGATTCAAAGGAGCA
TAACTGCGCTGATGAACACAGTAGTGGCTGGTGGTATAAAGGTTGTTATG
CAATAAATGCTAATAAAGCACCAGCAAAACAACAGCAAACAACATATGCA
GGTGGTATGAGCTGGCCCGCCTGGCTGGGCAGTCACTCTCAATCATTGAA
AGCAATGAATATGGCAATAAAGAAAATGACCTAATCAAAAGCCTCCTTTT
TAATAACAACAATTTAATTAGATTAATTTGACCGAAATTTAATCAATGAG
CCTCatttaatcaaaaaaaatacgtaagtaatagttatcgcacaGTACCG
AATACAATATGGGATATGTTTTTCTCGTTTAGAGTTTTCTATAATTAcct
tagcgagcacctcactaaaaaccgggattttctatttcgttaattgcgta
aaaaaacgcgggtgacgtttAGTATAGGCTATAATTACCTCGCCTATATC
TAATATTGTACCGGTTAAAGTATGATGTCTGGTTTATCGTCGACTTGAAA
AATAGCtatctttttctctattttgtttttctcttcttggttttctctct
ctctattttgataaaatctacATCAACACATTCGAAAAAAACATTTCTGA
TAAGTTGTTGTGTATTGCAAgcgaaaagaaaatttctaaccataaaattg
taaaatctaCGATAtctcgcttaccagaccccGTTTTTGAACCCAGCCTT
GTAATTTTATATAGGATATGCCCCctgtcataattgtcacaattgagtgc
attttcaagcaatctagagctcaaattttcaaaattcccccctcgggcca
atcCGGTTGGCCCTCGcagtgtcactaaacttcagccccaaTATGGAAAt
acttcctacggcactgcttTGAGTGAAAAGATATCGTAATAAAAAAGTAA
TACCCTGTTTCAAAGTTgattgtacacgcttttttttttataagaataca
ctttataagaatgtccatgatgaaaatggccaaaaaattaagaatatgct
aagaatatcaccatcatggaattttgagacgtatgtactaaatgttaagt
ctagtctgaattaggatcctaacctaagaatactgtaaggatatttcagg
atgattttcccaaaaaagttaagaatatccatgatgaaatggatttacac
cattcttataaaaaaaaaagcgtgtaagggGCTTATTACAAGccttttaa
aatgcttttaaaaatccgcaaagaaattgaaaaaatgaaaacgaaatACA
GAAGAattgatcaaaaatttccaaattaaacTTCCCTGAGAGTGGGACCT
TAACAGATTTCAAATAATCTATTCAGAATTTGCTAAATCTTGGTTAAATA
TTCGGGCGATAGGTCCAGTtcaaacattttaagcctaattttcAGAGAAA
ACTTGAGAAACGGAATTCTTTCGCGACAGACTTCAAGAAAATACTGGTTT
taaagtttctttctttttattatataagttcattagttttttagttttat
cagattatttaaaaaaacggAGCGATACCGATCAAAGATATAAAGAAAAT
ATGTAGCTAAAAAAGATGACATAATGGTCTCTAAAAACCTGTATTTCaac
ttaaaattttcacatAATTTATATAGCACAAACGTAAAGCTTACACTAGA
GCCCATCCATATTTCATTGGGCAAACACCTTTGTAGTTAGTAACAAATAT
TGTTAACACGTTATTGTTATTCTGTAACTGTAAGCATACTCTTTTTATTg
taaaagaaatttataaaaagagGATAATGGCTTACATTAGCGCAAACAAC
AAAGAGCAGTCTGAAGATAATACAGAATaatgttcgaactcgatactttt
ttccggacacccggTCATTTGCCCTTAAGGGTGTTTATTTCAGCTAATGG
ATTTCTTTTGCTGTTGTTCAAAataatctgcataattagcgggATTCGGA
TTTCCTAGCAATTCCaatgatataaccgcatcacgACCGCATCGTTAGAT
AAAACCCCTGAatggaaaaaagtaaaaaatgtaATCTGCTTTTCCCGAAA
CTCGACCAAATTATTATCAGAACAATTCAATATCATTATGAGAATTTTTA
GACAATAAAATGgtgtaaaatttgttaattCACACTAAAAGTTTAGAGAG
CAATctgaaaaaaacgaaaaacacaAATCCCCTTTTATGGTCATAGCATA
TAAAAACCAGCCAAGATTCACCgattgagttcgaattagcgagagtcaac
tgtatctATGTTCGAAATGGCTCTTGCTGGCTCTCGTTTACCAAGCAGAT
TTGTTTCGTAAAAAAACAAGGTTTTGGTCAACGGTCTGATAAACTCGCCA
ACCCCTGAAGCCTTCTCTCAAACAAAAGAAGACATTCGCACTGAAAGTTT
TAGCGGTTCATTTTAGTACTTTTAGAGGTTCTAATAATCGCGTTTACCTT
TAGATAACAAATTTGTCCCTTTTCGGGAATAAATATAGTCCTTTAAGGAT
TAAAATGATACCTTCCGtggtacaattttttttaaaccgtTAAGGTAATT
TTAAAACACCCTTCTCATTCGCCCAGTAGAAAGACCTTGGGATGTCATTT
GAAAAAACTTAAGATTGAACGGCAAGACCTTGAGGAGTCTAGTTTGGCAT
GAACGAGCACGCAAGACAGATCATAAAGGTCTCTAATTGAACATTTATGC
TCTGTGTTAGGGAATCGTTATAATCCAAGACTCTGAAAGTTATTTTTCTA
ACCGTATTTCCGCTTGAAACCCTTTAAAGCTAAGTTAATTTCACTTAAGC
TATCCTTTAGCATAAGGTTGTTTCATAGATGTTATCATGGGTTGGAGTTA
TGCTGCCTTTGAAGCCTCGGGGATAAGGCGACAAAATAATACCTTTAGAG
GTATCTTTAATCGTGTCTATGATTCTTGCCTAATCGTGGAGTTTCGCTAC
TTTTGATACCTTAGAGATAAAAATTCGAACTCTTTGAggtatttttgaat
gttttcttgCGGGAAAACAGGCGACAAAAAAATACCTTTAGAGATACTTT
TAATCGCGTCTATGATTCTTGCCTAATCGTGTCTATGGAGCTTCGCTACC
TTTGATACCTTAGAGATACAAATTCGTACCCTTCCTGATAAAATCGATGC
TCTATGAGGTAACATTCCAAAGAGTCCTGGGACGGAGAGAACGACGGGAC
GTTgtgagaaaatgaaaacaatcatatTTCCGCGGTATAATTCCAGCACT
AGAAAGAGTAAATTCTCCTTAAAGTCCGAGAGAAACCCAAACTCCCGCct
ctttcaaaaatatactttttgatTGTGCCGCTCATTTGCTCTTTGTCTGT
CAATCTGACAGGTCGAAGCTCTCGTTCGCAAATTATTTAAAGTCCGAATT
TTAGCCGCCCGCTAGATTAtctaataactttttttttgcgatgctgaaga
aatccaaaaaattttggGGATTGATCAACTCTCCCAAATATCCCTGCTGG
AGAAGATCAACATTCGGTTCAAAAGCATATTGAAACCCTGAAATCACAAA
CCTATTGTTCTAAGCAAAAGAACGACTCATTTGGATCGACGAGCAAAATT
GATCAAGGATCGCATATATGTCAAAATTCTGATTGAAATATACCCAAACC
TTGCGAATGGCGAACAGGTAAGCAAAATTCGGCTAATTGAATCAGGCGGG
GGGGGGGCtattaggcaaaattgggtatgggGACGTACGACTGGTCACAG
TCccctttttaggctctgaagatatctgacagggccCAAATTAACTGGAA
ATAGGGAAATAGTTCTGATAGGGTCccgattttaccaaaaattcatatct
gacagtgtcaacttttcaaactacagcggcacgtccccgtcggccgtcaa
ggtcaNAGTTCTGATAGGGTCccgattttaccaaaaattcatatctaaCA
GTGTCAACTTTTCAAACtacagcggcacgtccccgtcggccgtcaaggtc
agtgcccccagGCATCTAATATGTTACTTTGCAACAAGCGTATATAGCAT
CATTGAAATATCATTGAAAGTAAGAATATAATGAACAAAGGTTTTACAAA
ATGTAACTTTCTTTTTCAACAGAGCGCTGTTGTGGGAGTATTAACGTTAC
CGGTACTATTTCGAGAAGATACCAAAAATTACTATGGAATCGAGAACGCG
CCCTCTCCTCGAATCGGTCATGCTAACCCTGACACTTTTGAGGATCAAGA
TTTCTTCATTCACCTAGATGGCATCACCATAGGAAAGTCAAGAGATCCTC
TGACGGCATTGCCCTATGAAATTGCTCAGTCTTATACAGAAAAAATCACG
GTAGTGAATAAATGAGAAAGATTGAATAATCTTACTGAATAGTAAATAGT
NTTATAGAATCGGTTTACTAGTTTTGTTAATTGTaacttttatttaattt
atgATACATCATTCCATTTATTGAATTATCTGGCTTTCTTCTATATTTAT
CAATATTGTAAATTTCATTTAATACAATCTACAAAAATAAAGATAGGAGC
TTTGATCTCCCGTATTAACTTTATGAGTTATTCGTTCAATTAGTATTCGC
TTATTCTAGTGAAGAAATGATAGGAAATTCAAAATACCTAGGAGGTTTAA
GGAAAATACCTTTTTCGCACCATCACATGTAAGTGATGAAAAACAACCCC
GTGGGTAAAAATTAAAACCGCTTTATCGGCACTTTTGTATCCTTTTGGTG
GTGTTTTTAAAGCACATTAATGGTAtatcaaacaaattttaccCTAAAAG
GGTCGTTTTGCGGTATCGTTTGAAAACTACCTTTTTGGTGACTTAGGAAT
ACCTTTTcggagacaaaaaaaaatttcttttggaagTATTATTTTCATAC
CTCAAAAGGTACCTAAAAGTACCTTTAAAGGGTCGTTTTGCGGTATCGCT
AAAATAAACCCACTCCGGAAATGGTCGTGGAAGGTAAATAACTGATGCct
attgtaaaagagggtaaataaatacctttcaccgggtagttaagaaatcc
accgggtaatCCCTTCCTAATTTTACTTTCCccattcccaattaaaaact
tccctgtttggaaacttcttctcgatcgggaaacaaaaatctgttttgtt
tacaaaaattcaacttcccgttcgggaacaatgaaaagttcttgaccaaa
acgggaaacagaaaagtgatgaaattttcaatctgggaacagtttccttt
ttgggttattttcaccttcccgttcgggaacaatgaaaagttcttgacca
aaacgggaaacagaaaagtgatgaaattttcaatctggaaacagtttcct
ttttgggttattttcaccttcccgttcgggaaatatttcccgttaaggca
atagttatCATTTCTATGTAGTGGCTCCGACTGTTTgtgtctttttctat
gtttttttttctcttgctGTTATTTTCTCTCTCCTctattttgatgaatg
aaatcaaaatcaaaacattcgaaaaaaaaatcattaaatggAGATGGTTC
TCCTTAAAGCAATACTTCGAAACAATCAAAActaaataaagaacttttct
gattggttgaagaAAGAGAAAATATACGAGACGCGTGCTATTTAATTTTT
ATCAGCTGGATTTCGTTTTATTTCAGGTGAGGGGATATAGTATAGTgtta
attataagaactttctaaATTAGGAAGggatttttacagatttttatttt
actaaATTGAAACACTCAAACATTGTAGCAAAAAAGTCGATAACATCTCG
GGAAAAGTGTAAATGTCGTAAATAGTGTTTTCATTTTGGCGAGATCGTAT
GCTGTCTCGAAGTAGAGCTTTAAGGAGAACATTCTCCctttaaaaagatc
aaaaaattctttttatgaCTCTTATAAAAGAGCTGTTGTgagtgaaaaga
aaaaacagcAGTTTTTAGTTTTCAGTTCACCAATAACGTCAATTCAGACC
ATCTTGAATTTAAAGTGTTAagttttcaattaaaacttaTGACATAgttc
aaagaaattttaattAGATTTCCAATcctaaaaaaaagttaattccTCAC
TCTTATAATCGCAAAAAACATTCAACGAAGACTGTAAGCAGAAATTAAGT
AATGTTCTCTGCGAGAATACAAATGGACATGCATAAAGTAATAATTTGTA
GCTTAATGGTTTCCCTTATCATTAATGGGAATCTTGCACAAGAAATGCAA
CTTAACTCTCATTTTCGcctggaaaaagaaaattacatcATCAAAAATGG
CTCTCATATACCATCAGAAGAATTTGTTATCAAAGGCTCGGAAATTGAAT
GCTTGTTAAAATGTCAACTCAATTATTTGGCGTGCTTCACTCTTGAAATT
CTGAAGTTGGGTTTAACAAGCTGGTTGTGTCGATTTTACAATGTCGATTT
CATGAAATTGAGTTATGAATCAAAAGAGGGGTCAATGGTTTATTCTACTA
CTGCACGAAGTTGTTTAGAATGGTTGGAAAGAGGCTTCACATTGGATGGT
GTGTATAAAATACTGACCGTTGGAGAAGAAAAAGAAGTCTTTTGTGATAT
GACAGGTAAATATAGTTAAGTTATAGTTAATTAATTTTCTAGCCTAGACT
ATACAGAGCTTTTCATTGACTGAACAATTGAATAGCAAAGTGAAACTGAA
CCAAATACTAAGGGAGTATCTTCAAATTTCTCTTGGCAAGCAAAAGTGAT
GCCTTAAAATTTGAGTAACATTTCGGATGATGGATCGAGTTTAGCACTTC
CTTAGTTTTCGTGTTTTAAATTATTCGAGTTCTGGGGGTAAAAGTTAGTT
TCAATCCAGCATTTGTATGAAATCTTTGCATGTCGCACAGCTAAAGTGGG
ATAAAAGTGCCTTGAAATCCGGTATAAGAGATTCACCTTTAGCTTCCACT
TTACCTTATTGAACTATACCAACTAATCCATCGACTAAAGAAACAgagtt
ttcaataaaaacccATTGATTCTTTAACAATACCTTTAACGTACCTGTAT
TGCAGTAAACCGCGACAAGCAGACTCTTATTCTCAAGATTTCTTTTCGTT
ATAACCTGTTCGCTTGTGTGTTTTAGGTGGCGGTTGGACAATGATTCAAC
GCCGATTAAACGGTGACATTGATTTCAATCGAGGTTGGCAATCATACAAA
GAAGGCTTTGGTGATGTCAATGGTGATTTTTGGATTGGTTTGGAAACCAT
TCGAGAAATGAGTGTGTTGTTGAACAACACTTTGATTCGAATTCAAGGTG
AAAGTTTTAACGAAGATCGAAGATTTATCATTGCAAAGGTAAAATAATTG
GTTATTTGCATTCTTACTTATTCTGGCGTTTTATTTCTAAGTACTCCACT
GATTCTTAACGTTTAAAATGTCATCAGAAGTTTTTCTAATCATTTCCCGT
TTAATGAATAGGGATTCTACATCGAAGACGAACAAAAGAAATACAAATTG
CATGCTGGGACAATGATCAATGATGAATGGGATATCGGACATGATTGGAC
ATATCATGGTGGTTCAATGTTCACAACACGGGATGACGATAATGATAAAA
AAGGTGGTAGCAATTGTGCACAAAAATATCCTTGTGCTTGGTGGTATGTG
AATTGTTATGCATTGAATGCTAACAGAGCACcagcaaaacaacaacaaac
aacatATGCAGACGGTATCAGCTGGCCCGCCTGGTTGGGCGATTTCCAAT
CGTTGAAAACCATAAATATGgcaataaagaaaatgaattgaATGTCTTAT
TGATGtattctaaaaagattttatttatataaattctgttcaactttttt
ttgaaaaatcatattAAGTTTGTATGTAAAATTTGTGTTTTATGTTCTAG
TATGGTATTTTGCATTAGATTTTCATTCCAGAAACAGTCAATTGTCTCaa
gtttacattttatttcaattGCTAACACACCCTTTGTTAACCTATCCGTT
CaccaaattttgaagaaaagttcAGATAGAGGCTCAGATTATTCAACATT
CTTCAGAACGCTTTCCCAATAAAAAGAGTCAGAATTTCAACCAAGAGTTC
ACCGatacccagctggtacacaacattgtttccacGTTCATCTagcattc
acaacgtccatttaacgttggattaacgttgaaataac Coding sequence (CDS) from alignment at scaffold_480:40797..50784+ >TCONS_00068210 ID=TCONS_00068210|Name=TCONS_00068210|organism=Clytia hemisphaerica|type=CDS|length=2988bp|location=Sequence derived from alignment at scaffold_480:40797..50784+ (Clytia hemisphaerica)
ATGTTCTCTGCAAGAATACAAATGGACATGTATAAAATCTTAATTTGTAC
CTTAATGATTTCCCTTATCATTAATGGCACTCTTGCGCAAGAAATGCAAC
TTAACTCTCATTTTCGcctggaaaaagaaaattacacCATTAAAAATGGC
TCTCATATACCATCAGAAGAATTTGTTATCAAAGGCTCGGAAATTGAATG
CTTGTTAAAATGTCAACTCAATTATTTGGTGTGCTTCACTCTTCAAATTC
TGAAGTTGGGTTCAGCAAGCTGGTTGTGTCGATTTTACGACGTCGATTTC
ATGAAATTGAGTTATGAATCAAAAGAGGGGTCAATGGTTTATTCTACTAC
TGCACGAAGTTGTTTAGAATGGTTGGAAAGAGGCTTCACATTGGATGGTG
TGTATAAAATACTGCCCGTTGGAGAAGAAAAGGAAGTCTACTGTGATATG
ACTGGTGGCGGTTGGACAATGATTCAACGCCGATTAAACGGTGACATTGA
TTTCAATCGAGGTTGGCAATCATACAAAGAAGGCTTTGGTGATGTCAATG
GTGATTTTTGGATTGGTTTGGAAACCATTCGAGAAATGAGTGTGTTGTTG
AACAACACTTTGATTCGAATTCAAGGTGAAAGTTTTAACGAAGATCGAAG
ATTTATCATTGCAAAGGGATTCTACATCGAAGACGAACAAAAGAAATACA
AATTGCATGCTGGGACAATGATCAATGATGAATGGGATATCGGACATGAT
TGGACATATCATGGTGGTTCAATGTTCACAACACGGGATGACGATAATGA
TAAAAAAGGTGGTAGCAATTGTGCACAAAAATATCCTTGTGCTTGGTGGT
ATGTGAATTGTTATGCATTGAATGCTAACAGAGCACcagcaaaacaacaa
caaacaacatATGCAGACGGTATCAGCTGGCCCGCCTGGTTGGGCGATTT
CCAATCGTTGAAAACCATAAATATGgcaataaagaaaatgaattgaATGT
TCTCTGCAAGAATACAAATGGACATGTATAAAATCTTAATTTGTACCTTA
ATGATTTCCCTTATCATTAATGGCACTCTTGCGCAAGAAATGCAACTTAA
CTCTCATTTTCGcctggaaaaagaaaattacacCATTAAAAATGGCTCTC
ATATACCATCAGAAGAATTTGTTATCAAAGGCTCGGAAATTGAATGCTTG
TTAAAATGTCAACTCAATTATTTGGTGTGCTTCACTCTTCAAATTCTGAA
GTTGGGTTCAGCAAGCTGGTTGTGTCGATTTTACGACGTCGATTTCATGA
AATTGAGTTATGAATCAAAAGAGGGGTCAATGGTTTATTCTACTACTGCA
CGAAGTTGTTTAGAATGGTTGGAAAGAGGCTTCACATTGGATGGTGTGTA
TAAAATACTGCCCGTTGGAGAAGAAAAGGAAGTCTACTGTGATATGACTG
GTGGCGGTTGGACAATGATTCAACGCCGATTAAACGGTGACATTGATTTC
AATCGAGGTTGGCAATCATACAAAGAAGGCTTTGGTGATGTCAATGGTGA
TTTTTGGATTGGTTTGGAAACCATTCGAGAAATGAGTGTGTTGTTGAACA
ACACTTTGATTCGAATTCAAGGTGAAAGTTTTAACGAAGATCGAAGATTT
ATCATTGCAAAGGGATTCTACATCGAAGACGAACAAAAGAAATACAAATT
GCATGCTGGGACAATGATCAATGATGAATGGGATATCGGACATGATTGGA
CATATCATGGTGGTTCAATGTTCACAACACGGGATGACGATAATGATAAA
AAAGGTGGTAGCAATTGTGCACAAAAATATCCTTGTGCTTGGTGGTATGT
GAATTGTTATGCATTGAATGCTAACAGAGCACcagcaaaacaacaacaaa
caacatATGCAGACGGTATCAGCTGGCCCGCCTGGTTGGGCGATTTCCAA
TCGTTGAAAACCATAAATATGgcaataaagaaaatgaattgaATGTTCTC
TGCAAGAATACAAATGGACATGTATAAAATCTTAATTTGTACCTTAATGA
TTTCCCTTATCATTAATGGCACTCTTGCGCAAGAAATGCAACTTAACTCT
CATTTTCGcctggaaaaagaaaattacacCATTAAAAATGGCTCTCATAT
ACCATCAGAAGAATTTGTTATCAAAGGCTCGGAAATTGAATGCTTGTTAA
AATGTCAACTCAATTATTTGGTGTGCTTCACTCTTCAAATTCTGAAGTTG
GGTTCAGCAAGCTGGTTGTGTCGATTTTACGACGTCGATTTCATGAAATT
GAGTTATGAATCAAAAGAGGGGTCAATGGTTTATTCTACTACTGCACGAA
GTTGTTTAGAATGGTTGGAAAGAGGCTTCACATTGGATGGTGTGTATAAA
ATACTGCCCGTTGGAGAAGAAAAGGAAGTCTACTGTGATATGACTGGTGG
CGGTTGGACAATGATTCAACGCCGATTAAACGGTGACATTGATTTCAATC
GAGGTTGGCAATCATACAAAGAAGGCTTTGGTGATGTCAATGGTGATTTT
TGGATTGGTTTGGAAACCATTCGAGAAATGAGTGTGTTGTTGAACAACAC
TTTGATTCGAATTCAAGGTGAAAGTTTTAACGAAGATCGAAGATTTATCA
TTGCAAAGGGATTCTACATCGAAGACGAACAAAAGAAATACAAATTGCAT
GCTGGGACAATGATCAATGATGAATGGGATATCGGACATGATTGGACATA
TCATGGTGGTTCAATGTTCACAACACGGGATGACGATAATGATAAAAAAG
GTGGTAGCAATTGTGCACAAAAATATCCTTGTGCTTGGTGGTATGTGAAT
TGTTATGCATTGAATGCTAACAGAGCACcagcaaaacaacaacaaacaac
atATGCAGACGGTATCAGCTGGCCCGCCTGGTTGGGCGATTTCCAATCGT
TGAAAACCATAAATATGgcaataaagaaaatgaattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068210-exon-scaffold_480-1491911889:40797..41287 | TCONS_00068210-exon-scaffold_480-1491911889:40797..41287 | Clytia hemisphaerica | exon |
| TCONS_00068210-exon-scaffold_480-1510915933:40797..41287 | TCONS_00068210-exon-scaffold_480-1510915933:40797..41287 | Clytia hemisphaerica | exon |
| TCONS_00068210-exon-scaffold_480-1575043694:40797..41287 | TCONS_00068210-exon-scaffold_480-1575043694:40797..41287 | Clytia hemisphaerica | exon |
| TCONS_00068210-exon-scaffold_480-1491911889:49723..49934 | TCONS_00068210-exon-scaffold_480-1491911889:49723..49934 | Clytia hemisphaerica | exon |
| TCONS_00068210-exon-scaffold_480-1510915933:49723..49934 | TCONS_00068210-exon-scaffold_480-1510915933:49723..49934 | Clytia hemisphaerica | exon |
| TCONS_00068210-exon-scaffold_480-1575043694:49723..49934 | TCONS_00068210-exon-scaffold_480-1575043694:49723..49934 | Clytia hemisphaerica | exon |
| TCONS_00068210-exon-scaffold_480-1491911889:50058..50784 | TCONS_00068210-exon-scaffold_480-1491911889:50058..50784 | Clytia hemisphaerica | exon |
| TCONS_00068210-exon-scaffold_480-1510915933:50058..50784 | TCONS_00068210-exon-scaffold_480-1510915933:50058..50784 | Clytia hemisphaerica | exon |
| TCONS_00068210-exon-scaffold_480-1575043694:50058..50784 | TCONS_00068210-exon-scaffold_480-1575043694:50058..50784 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_480 | supercontig | scaffold_480:40797..50784 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00068210 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2) HSP 1 Score: 144.821 bits (364), Expect = 1.084e-38 Identity = 83/222 (37.39%), Postives = 122/222 (54.95%), Query Frame = 2
Query: 368 SMVYSTTARSCLEWLERGFTLDGVYKI-LPVGEEKEVYCDMT--GGGWTMIQRRLNGDIDFNRGWQSYKEGFGDVNGDFWIGLETIREMSVLLNNTLIRIQGESFNEDRRFIIAKGFYIEDEQKKYKLHAGTMINDEWDIGHDWTYHGGSMFTTRDDDNDKKGGSNCAQKYPCAWWYVNCYALNANRAPAKQQQTTYADGISWPAWLGDFQSLKTINMAIKK 1024
S +T R+C + L+RG+ L G + I LP V CDM GGGWT+ QRR++G +DF R W +YK+GFG G+FW+G + I ++ ++ +R+ F + +F K F + DE +KYKL G + G+ T H + F+T+D DND SNCA+K+ AWWY +C+A N N +YA+GI+W A G S K M ++
Sbjct: 108 SQSCATGPRNCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTA-QGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGS--AGNSLTGHNNNFFSTKDQDNDVS-SSNCAEKFQGAWWYADCHASNLNGLYLMGPHESYANGINWSAAKGYKYSYKVSEMKVRP 325
The following BLAST results are available for this feature:
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