TCONS_00068184 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068184
Unique NameTCONS_00068184
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068184 ID=TCONS_00068184|Name=TCONS_00068184|organism=Clytia hemisphaerica|type=transcript|length=341bp
AAGCAACAATCTCCAAAGTCACCAAGTCAGACCACAAACCAGTTATCGCA
AAAATAATCGTCAAATGGAAATACCAGccaaaatcccaaaatattgtTTC
GAAACGCTTCAATGTAATAAACTTTAATAATACAAAAACCATAACCAATT
ATAAATACGAGATAATGTCGACAATAGCGAACGAAAATGATCAGTCCGCA
GATAACCAATCTATGTGGGACAATATCGCAAAAACTTTAAAGCAAGCCGC
TACCAACACGATAGGCTTCGTTAAAAAATCCAAGAACCCCGTCAACTTGG
AAGTTCAAGAACTTTCGATACTTCAACGAAATATTCAACAC
Run BLAST on NCBI

protein sequence of TCONS_00068184-protein

>TCONS_00068184-protein ID=TCONS_00068184-protein|Name=TCONS_00068184-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
ATISKVTKSDHKPVIAKIIVKWKYQPKSQNIVSKRFNVINFNNTKTITNY
KYEIMSTIANENDQSADNQSMWDNIAKTLKQAATNTIGFVKKSKNPVNLE
VQELSILQRNIQH
Run BLAST on NCBI

transcript from alignment at scaffold_48:85039..85379

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068184 ID=TCONS_00068184|Name=TCONS_00068184|organism=Clytia hemisphaerica|type=transcript|length=341bp|location=Sequence derived from alignment at scaffold_48:85039..85379 (Clytia hemisphaerica)
GTGTTGAATATTTCGTTGAAGTATCGAAAGTTCTTGAACTTCCAAGTTGA
CGGGGTTCTTGGATTTTTTAACGAAGCCTATCGTGTTGGTAGCGGCTTGC
TTTAAAGTTTTTGCGATATTGTCCCACATAGATTGGTTATCTGCGGACTG
ATCATTTTCGTTCGCTATTGTCGACATTATCTCGTATTTATAATTGGTTA
TGGTTTTTGTATTATTAAAGTTTATTACATTGAAGCGTTTCGAAacaata
ttttgggattttggCTGGTATTTCCATTTGACGATTATTTTTGCGATAAC
TGGTTTGTGGTCTGACTTGGTGACTTTGGAGATTGTTGCTT

Coding sequence (CDS) from alignment at scaffold_48:85039..85379

>TCONS_00068184 ID=TCONS_00068184|Name=TCONS_00068184|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_48:85039..85379 (Clytia hemisphaerica)
GTGTTGAATATTTCGTTGAAGTATCGAAAGTTCTTGAACTTCCAAGTTGA
CGGGGTTCTTGGATTTTTTAACGAAGCCTATCGTGTTGGTAGCGGCTTGC
TTTAAAGTTTTTGCGATATTGTCCCACATAGATTGGTTATCTGCGGACTG
ATCATTTTCGTTCGCTATTGTCGACATTATCTCGTATTTATAATTGGTTA
TGGTTTTTGTATTATTAAAGTTTATTACATTGAAGCGTTTCGAAacaata
ttttgggattttggCTGGTATTTCCATTTGACGATTATTTTTGCGATAAC
TGGTTTGTGGTCTGACTTGGTGACTTTGGAGATTGTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042560XLOC_042560Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068184-exon-scaffold_48-1491911889:85039..85379TCONS_00068184-exon-scaffold_48-1491911889:85039..85379Clytia hemisphaericaexon
TCONS_00068184-exon-scaffold_48-1510915933:85039..85379TCONS_00068184-exon-scaffold_48-1510915933:85039..85379Clytia hemisphaericaexon
TCONS_00068184-exon-scaffold_48-1575043694:85039..85379TCONS_00068184-exon-scaffold_48-1575043694:85039..85379Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068184-proteinTCONS_00068184-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:85039..85379 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.537538	0.262092	0.414053	0.595448	0.7249	0.572826	1.53595	2.06775	0.452973	0	0	0.536996	1.60875	3.3414	0.76308	1.56129	1.71581	1.74939	2.46428	2.69075	1.11753	2.42738	0.408698	0.950555	0.288566	0	1.10561	0	0.894938	0.303934
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068184 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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