TCONS_00068177 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068177
Unique NameTCONS_00068177
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068177 ID=TCONS_00068177|Name=TCONS_00068177|organism=Clytia hemisphaerica|type=transcript|length=414bp
ATGAGAAATACAAGAAACTTAGAAACAAATGCAACGGAAAATTAAAagat
tcaaaaagaaaacactaCAAAGAAATTCTagaagaaaacaaatcaaaccC
AAAGAAATTTTGGGACACTGTCAAAAAAATATTCCCGACAAAGTCAAAAT
CAAATGTACCTTTCTCTACCCAGAAGATAGAAAACGAACGAACAGCAATC
ATCTTCTCCGATTATTTTAGCGAAGTCATCAAAAAGCTAAAATCGACCTT
CTCAGTTCACCGACCACGTTTGGAGACCACCTAAAATTCGTCCACTAAGA
ACTCTTCAAGCCTTTAATTTCAACTACGTACCGAAAATTTTCGTCGAaag
agaattgaaaaatttaaagcgCAACAAAGCAACAGGTGCAGATGATTTAC
CTCCTGGAATGTTA
Run BLAST on NCBI

transcript from alignment at scaffold_48:1..414

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068177 ID=TCONS_00068177|Name=TCONS_00068177|organism=Clytia hemisphaerica|type=transcript|length=414bp|location=Sequence derived from alignment at scaffold_48:1..414 (Clytia hemisphaerica)
TAACATTCCAGGAGGTAAATCATCTGCACCTGTTGCTTTGTTGcgcttta
aatttttcaattctcttTCGACGAAAATTTTCGGTACGTAGTTGAAATTA
AAGGCTTGAAGAGTTCTTAGTGGACGAATTTTAGGTGGTCTCCAAACGTG
GTCGGTGAACTGAGAAGGTCGATTTTAGCTTTTTGATGACTTCGCTAAAA
TAATCGGAGAAGATGATTGCTGTTCGTTCGTTTTCTATCTTCTGGGTAGA
GAAAGGTACATTTGATTTTGACTTTGTCGGGAATATTTTTTTGACAGTGT
CCCAAAATTTCTTTGggtttgatttgttttcttctAGAATTTCTTTGtag
tgttttctttttgaatctTTTAATTTTCCGTTGCATTTGTTTCTAAGTTT
CTTGTATTTCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042553XLOC_042553Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068177-exon-scaffold_48-1491911889:1..414TCONS_00068177-exon-scaffold_48-1491911889:1..414Clytia hemisphaericaexon
TCONS_00068177-exon-scaffold_48-1510915933:1..414TCONS_00068177-exon-scaffold_48-1510915933:1..414Clytia hemisphaericaexon
TCONS_00068177-exon-scaffold_48-1575043694:1..414TCONS_00068177-exon-scaffold_48-1575043694:1..414Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:1..414 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.07675	1.51887	1.76355	1.53365	1.16692	1.84423	2.00249	1.2498	1.45836	3.61283	1.40268	3.57301	1.61137	0.836714	0.589622	1.89827	0.779503	1.86425	0.183969	0.962551	1.00396	0.489695	0	1.08241	1.48647	1.82413	0.711908	1.01302	0.384171	0.391409
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068177 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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