|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068146 ID=TCONS_00068146|Name=TCONS_00068146|organism=Clytia hemisphaerica|type=transcript|length=1241bp
ACTGCGAGATATTTGAGCAGTAGTAAAAATGTTTCTATAAATTAAAGAAT
TCTATCAAAACTTTTAGACTatacaaattaaaaacaacatCAACATCGAC
CCTCTGTGAAATAAAAATTATCCAAGGCAACAAAAGATGTTGAGACACCC
TGTTGTCCGATAATGGTGAGTGATGATTGAGGCTCTACTTTGACGGTCAA
TTTAGCCTTCGTCCACTTATGTTTATAGTCTAGCGTCTCCATCAAAGTCC
TAGGGTTGGGGTGCTTTGCAGCCATGCTAGGTTGTGCTTTCTCGTGAACT
GTCAGTCGTCCATGtgtgatttgataaacaaaatgaaaacacatCTCTCC
GTAAGACTTTAATCCACCTTCAGGTAATACCAATTGCCATGGCAACCAAA
GTTTAGCTCTATAGCCTCTGTAAGGGACGTTCACATATAAATATTTGGAA
GAACCATTATAGCCTTGTTGTGGGCCGTTTTTGTTTATTCCAACGGCCCA
ATCTCCCGTATCTCCGAAGGGTTGATTCCACCAATCACATTCATCCTTCT
CAAAATCACATTCAAAATATCTTCGAATCTTTTTCAAAGTAGGTTTCCTA
CCGCCATTTTGGACGATATCTTTATCCTCTCTGACGCAAAATTGACAAGC
TTTGGCACAATTTTTACGCATGTAATTATGGTATCGATGATCATGATGAC
AATAACCGGACGCTTTATATCTTGGACAGCGCACGTTCAAATCCTTACAG
TTCGGATCTGCGCAGAAGAGACAAGACCGTCGACAATGCTTCTTCATGAA
ACTGAAATATTCATTGCCTGGTTGACAGTATTCTTTCCATGAAGGACATT
TTATACGGATATCGTGACATGGTTTGTAAGCGATTTTCTTCGTTGGTCGA
GGATAAGGCGTGATCAAAATTGAAGGACATAGATTACAGGTCCGTCTACA
AATCTGGTACATATAGCTTCGGTAACCTGCTTGATGACACATACCGTTCA
TTTGCCAGTAGTAGCAAGCTGTCTCACCACCTTCATCATAACAGTTACCC
CATTCTTGGCCTTTCACCAGGTGAAGACAGGGTAAGAGAAGGATGGTGAG
TAGACCAAGCCACATCCTTGTCCACATTGAAGATGACAGATTATTCCTAC
AAATAAGAATTCGAGAAATCAGCTATTTGAAATTTACAATATAATCAAAA
TATCTATCGATccatttttttcctctttctctcGATGACAG Run BLAST on NCBI transcript from alignment at scaffold_48:80052..81977- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068146 ID=TCONS_00068146|Name=TCONS_00068146|organism=Clytia hemisphaerica|type=transcript|length=1926bp|location=Sequence derived from alignment at scaffold_48:80052..81977- (Clytia hemisphaerica)
ACTGCGAGATATTTGAGCAGTAGTAAAAATGTTTCTATAAATTAAAGAAT
TCTATCAAAACTTTTAGACTATACAAATTAAAAACAACATCAACATCGAC
CCTCTGTGAAATAAAAATTATCCAAGGCAACAAAAGATGTTGAGACACCC
TGTTGTCCGATAATGGTGAGTGATGATTGAGGCTCTACTTTGACGGTCAA
TTTAGCCTTCGTCCACTTATGTTTATAGTCTAGCGTCTCCATCAAAGTCC
TAGGGTTGGGGTGCTTTGCAGCCATGCTAGGTTGTGCTTTCTCGTGAACT
GTCAGTCGTCCATGTGTGATTTGATAAACAAAATGAAAACACATCTCTCC
GTAAGACTTTAATCCACCTTCAGGTAATACCAATTGCCATGGCAACCAAA
GTTTAGCTCTATAGCCTCTGTAAGGGACGTTCACATATAAATATTTGGAA
GAACCATTATAGCCTTGTTGTGGGCCGTTTTTGTTTATTCCAACGGCCCA
ATCTCCCGTATCTCCGAAGGGTTGATTCCACCAATCACATTCATCCTTCT
CAAAATCACATTCAAAATATCTTCGAATCTTTTTCAAAGTAGGTTTCCTA
CCGCCATTTTGGACGATATCTTTATCCTCTCTGACGCAAAATTGACAAGC
TTTGGCACAATTTTTACGCATGTAATTATGGTATCGATGATCATGATGAC
AATAACCGGACGCTTTATATCTTGGACAGCGCACGTTCAAATCCTTACAG
TTCGGATCTGCGCAGAAGAGACAAGACCGTCGACAATGCTTCTTCATGAA
ACTGAAATATTCATTGCCTGGTTGACAGTATTCTTTCCATGAAGGACATT
TTATACGGATATCGTGACATGGTTTGTAAGCGATTTTCTTCGTTGGTCGA
GGATAAGGCGTGATCAAAATTGAAGGACATAGATTACAGGTCCGTCTACA
AATCTGGTACATATAGCTTCGGTAACCTGCTTGATGACACATACCGTTCA
TTTGCCAGTAGTAGCAAGCTGTCTCACCACCTTCATCATAACAGTTACCC
CATTCTTGGCCTTTCACCAGGTGAAGACAGGGTAAGAGAAGGATGGTGAG
TAGACCAAGCCACATCCTTGTCCACATTGAAGATGACAGATTATTCCTAC
AAATAAGAATTCGAGAAATCAGCTATTTGAAATTTACAATATAATCAAAA
TATCTATCGTTCCATTTTTTTCCTCTTTCTCTCGACAGTTAAATGTTCTG
TGTTTTTTTGAAAGCGATATGATGACCCCTCAATAAAATCAACACACAGA
AGCTGACTGTGTAGTCACTTCGTATCAAAGCAAAACATTCAACAAAAATA
GATGACAAACAAGAGGCTTTGACTAAGAAAGCGTTGAGAAGAAAAGAATG
ATTCTTTCAAAGGCTAAACACACATAACAAAACTGTGTGACTGTATATCC
ATGTCAATATTCCATAAAAAAGAGTAGAGAATATTGTAAGATGAGAACTT
TCGGTTCTGTTTTTTCTTTGAGCGGAAGTGACGAAAGATAGAGGGTGAGT
GACCAGACCCTATATAGCGGTCGCTNGTTGGTCGAGGATAAGGCGTGATC
AAAATTGAAGGACATAGATTACAGGTCCGTCTACAAATCTGGTACATATA
GCTTCGGTAACCTGCTTGATGACACATACCGTTCATTTGCCAGTAGTAGC
AAGCTGTCTCACCACCTTCATCATAACAGTTACCCCATTCTTGGCCTTTC
ACCAGGTGAAGACAGGGTAAGAGAAGGATGGTGAGTAGACCAAGCCACAT
CCTTGTCCACATTGAAGATGACAGATTATTCCTACAAATAAGAATTCGAG
AAATCAGCTATTTGAAATTTACAATATAATCAAAATATCTATCGATCCAT
TTTTTTCCTCTTTCTCTCGATGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068146-exon-scaffold_48-1575043694:81071..81977 | TCONS_00068146-exon-scaffold_48-1575043694:81071..81977 | Clytia hemisphaerica | exon |
| TCONS_00068146-exon-scaffold_48-1575043694:80052..80385 | TCONS_00068146-exon-scaffold_48-1575043694:80052..80385 | Clytia hemisphaerica | exon |
| TCONS_00068146-exon-scaffold_48-1510915933:81071..81977 | TCONS_00068146-exon-scaffold_48-1510915933:81071..81977 | Clytia hemisphaerica | exon |
| TCONS_00068146-exon-scaffold_48-1510915933:80052..80385 | TCONS_00068146-exon-scaffold_48-1510915933:80052..80385 | Clytia hemisphaerica | exon |
| TCONS_00068146-exon-scaffold_48-1491911889:81071..81977 | TCONS_00068146-exon-scaffold_48-1491911889:81071..81977 | Clytia hemisphaerica | exon |
| TCONS_00068146-exon-scaffold_48-1491911889:80052..80385 | TCONS_00068146-exon-scaffold_48-1491911889:80052..80385 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:80052..81977 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016020 |
membrane |
Blast
The following BLAST results are available for this feature:
|
