|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068127 ID=TCONS_00068127|Name=TCONS_00068127|organism=Clytia hemisphaerica|type=transcript|length=2162bpRun BLAST on NCBI protein sequence of TCONS_00068127-protein >TCONS_00068127-protein ID=TCONS_00068127-protein|Name=TCONS_00068127-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp MVFHHFTSMVGVIEEQTTRDKDVDGRHSHLKAEKKFLSNLDKHINKNMEERun BLAST on NCBI transcript from alignment at scaffold_48:302624..309696+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068127 ID=TCONS_00068127|Name=TCONS_00068127|organism=Clytia hemisphaerica|type=transcript|length=7073bp|location=Sequence derived from alignment at scaffold_48:302624..309696+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_48:302624..309696+ >TCONS_00068127 ID=TCONS_00068127|Name=TCONS_00068127|organism=Clytia hemisphaerica|type=CDS|length=10233bp|location=Sequence derived from alignment at scaffold_48:302624..309696+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00068127 vs. Swiss-Prot (Human)
Match: S2546 (Solute carrier family 25 member 46 OS=Homo sapiens GN=SLC25A46 PE=1 SV=1) HSP 1 Score: 261.151 bits (666), Expect = 1.022e-78 Identity = 136/320 (42.50%), Postives = 208/320 (65.00%), Query Frame = 1
Query: 232 ENLNRITGFGIGVGSLYLQEALGYPFLVLQRQCQVNNASLKYHVQPFSLFPVINKMHQRQNIGAFWKGWGSSGLVKGLTIGTEIVIFELCNVPREETKQEDDKKGMIIHETLKGVSLLMTLPFFSASLIDTVQTLVLGEPRSILTFFKDAFYRLIGWYTSRGHGRLISFYSLVLPSILYGVLRYSVKVFLSSYILAIRSPTKVETNNEQESTASMRAL---YYAELSSNFMASLLTDVMLFPLETVFLRLHLQGTRTIIDDTDKGYGVVPLCTSYDGVTDCFNTIQRQEGFSGFYKGFGALCLQYFVQFIILKGAKIFYS 1182
E LNR GFGIG+ SL+ + L +P +VL+RQCQVN + YH+ PF++ ++ ++ Q A WKG GS+ +V+G+T+G E +I E +PRE + K+ + H LK ++ ++ +PF+SASLI+TVQ+ ++ + IL K+ R+IG RL+ SL+ P++L+GVL Y + + ++L I K ++ EST+ ++++ Y+ EL +NF ASL +DV+L+PLETV RLH+QGTRTIID+TD GY V+P+ T Y+G+ DC NTI+++EG GFYKGFGA+ +QY + +L+ KI YS
Sbjct: 95 EQLNRFAGFGIGLASLFTENVLAHPCIVLRRQCQVNYHAQHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGIISEFTPLPREVLHKWSPKQ-IGEHLLLKSLTYVVAMPFYSASLIETVQSEIIRDNTGILECVKEGIGRVIGMGVPHSK-RLLPLLSLIFPTVLHGVLHYIISSVIQKFVLLILK-RKTYNSHLAESTSPVQSMLDAYFPELIANFAASLCSDVILYPLETVLHRLHIQGTRTIIDNTDLGYEVLPINTQYEGMRDCINTIRQEEGVFGFYKGFGAVIIQYTLHAAVLQITKIIYS 411 HSP 2 Score: 148.673 bits (374), Expect = 1.610e-38 Identity = 75/158 (47.47%), Postives = 109/158 (68.99%), Query Frame = 3
Query: 1467 RLISFYSLVLPSILYGVLRYSVKVFLSSYILAIRSPTKVETNNEQ--ESTASMRAL---YYAELSSNFMASLLTDAMLFPLETVFLRLHLQGTRTIIDDTDKGYGVVPLCTSYDGVTDCFNTIQRQEGFSGFYKGFGALCLQYFVQFIILKGAKIFYS 1925
RL+ SL+ P++L+GVL Y + + ++L I K +T N EST+ ++++ Y+ EL +NF ASL +D +L+PLETV RLH+QGTRTIID+TD GY V+P+ T Y+G+ DC NTI+++EG GFYKGFGA+ +QY + +L+ KI YS
Sbjct: 257 RLLPLLSLIFPTVLHGVLHYIISSVIQKFVLLI---LKRKTYNSHLAESTSPVQSMLDAYFPELIANFAASLCSDVILYPLETVLHRLHIQGTRTIIDNTDLGYEVLPINTQYEGMRDCINTIRQEEGVFGFYKGFGAVIIQYTLHAAVLQITKIIYS 411 The following BLAST results are available for this feature:
BLAST of TCONS_00068127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.