TCONS_00068064 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068064
Unique NameTCONS_00068064
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068064 ID=TCONS_00068064|Name=TCONS_00068064|organism=Clytia hemisphaerica|type=transcript|length=1368bp
GTTAATCATCCATTGTTTCGTTACAGACATAATAATAATTGATAACAAAT
AATAACAGCTGTGGAGGAGCTTTAATTTATGTGAATGAATGAACTGTACA
TTTACCTGTTGTGTTAATTCGTGTTAAGACTTACTGACAATAACTGATGA
TACTGATCGTGACAGTGAACTAACAATTGGTGAAGACCACCGCACCCTGA
AGAAAGGttatcttcttcatttttacatGGTAGCAGAGGAACAATGGCAT
CTACATCTTACAACAAAGCTCCTCCTTTGCTATCGTCCAGTAAAACATAT
AGTGATTggaagaaactaatcaatataTGGACGGAGCTCACAACCCTTGA
GAAGAAGAAACAAGGTCCAGCATTGGTATTGACCCTTGAAGGAAAAGCGC
AAGAAGCAGCCCTTGAATTGTCACAAGAGGAAATTACTGGCGAAAATGGG
GTTAAACAAATCTTGACAAGGCTTGACAAGATTTATGAAAAAGACAAACT
TACAGAGAAGTTCAACGCAATTGAAAAATTCGAGGGATACAAACGTGTCA
AGGAAAGCACCATTCGTGAATTCCTTGTTGAATTTGACAAACGACTACAC
AAGATAAAGAACTACATCCAATATCCTCAAGATCTCCTTGCCTATCGCCT
ACTCAAAACTGCTAACCTCGAACCAACACATGAAAAGTTAATCAAAGCAA
CCATCACAGATTTGAATTATGAAGATGTCagaaacaaacttgtaaaagtg
TTTGCTGATGACTCAATCTCTGGCTTAGAAAGTGATTTTGCAGGAGTAAA
GGTCAAGAGCGAGCCAACATTTTATGGAAGAGAAAGCGAAGGAGAAAACA
CttctgaagaagaagaaaataccTTCTATACTAGAAACCGCCAGACCTAT
AAAAATAAGCCAAGAGGAGGAACCATTCGAAAAACCAACTATCGGATTGA
ACAATCAAGTAAGCCTGATAGAAGAAATGTTcatgaaaaagctaaaaacC
CATTAGATCGGTTTGGTCGAGTGTCAAGATGTTCAATTTGNGCCATTCGA
AAAACGAACTATCGGATTGAACAATCAAGTAAGCCTGATAGAAGAAATGC
TcatgaaaaagctaaaaacCCATTAGATCGGTTTGGTCGAGTGTCAAGAT
GTTCAATTTGTGATAGCATCAACCACTGGCAACAAGAATGCCCAGATGGC
AACTCCACAAATAATGAAACCTATGTTGTCCATGAGATTATCCTTCACAA
TGTGGATGATTCTGAAGTTAATCTACGTAACCTGGTGTCAGAAACATGGA
ACTGTGGATTGTTAGACTGTGGTGCAAGCAAAACTGTATGTGGAGAAGTA
TGGCTAAAACAATATCTA
Run BLAST on NCBI

protein sequence of TCONS_00068064-protein

>TCONS_00068064-protein ID=TCONS_00068064-protein|Name=TCONS_00068064-protein|organism=Clytia hemisphaerica|type=polypeptide|length=375bp
MASTSYNKAPPLLSSSKTYSDWKKLINIWTELTTLEKKKQGPALVLTLEG
KAQEAALELSQEEITGENGVKQILTRLDKIYEKDKLTEKFNAIEKFEGYK
RVKESTIREFLVEFDKRLHKIKNYIQYPQDLLAYRLLKTANLEPTHEKLI
KATITDLNYEDVRNKLVKVFADDSISGLESDFAGVKVKSEPTFYGRESEG
ENTSEEEENTFYTRNRQTYKNKPRGGTIRKTNYRIEQSSKPDRRNVHEKA
KNPLDRFGRVSRCSIXAIRKTNYRIEQSSKPDRRNAHEKAKNPLDRFGRV
SRCSICDSINHWQQECPDGNSTNNETYVVHEIILHNVDDSEVNLRNLVSE
TWNCGLLDCGASKTVCGEVWLKQYL
Run BLAST on NCBI

transcript from alignment at scaffold_478:268612..269979

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068064 ID=TCONS_00068064|Name=TCONS_00068064|organism=Clytia hemisphaerica|type=transcript|length=1368bp|location=Sequence derived from alignment at scaffold_478:268612..269979 (Clytia hemisphaerica)
TAGATATTGTTTTAGCCATACTTCTCCACATACAGTTTTGCTTGCACCAC AGTCTAACAATCCACAGTTCCATGTTTCTGACACCAGGTTACGTAGATTA ACTTCAGAATCATCCACATTGTGAAGGATAATCTCATGGACAACATAGGT TTCATTATTTGTGGAGTTGCCATCTGGGCATTCTTGTTGCCAGTGGTTGA TGCTATCACAAATTGAACATCTTGACACTCGACCAAACCGATCTAATGGg tttttagctttttcatgAGCATTTCTTCTATCAGGCTTACTTGATTGTTC AATCCGATAGTTCGTTTTTCGAATGGCNCAAATTGAACATCTTGACACTC GACCAAACCGATCTAATGGgtttttagctttttcatgAACATTTCTTCTA TCAGGCTTACTTGATTGTTCAATCCGATAGTTGGTTTTTCGAATGGTTCC TCCTCTTGGCTTATTTTTATAGGTCTGGCGGTTTCTAGTATAGAAggtat tttcttcttcttcagaaGTGTTTTCTCCTTCGCTTTCTCTTCCATAAAAT GTTGGCTCGCTCTTGACCTTTACTCCTGCAAAATCACTTTCTAAGCCAGA GATTGAGTCATCAGCAAAcacttttacaagtttgtttctGACATCTTCAT AATTCAAATCTGTGATGGTTGCTTTGATTAACTTTTCATGTGTTGGTTCG AGGTTAGCAGTTTTGAGTAGGCGATAGGCAAGGAGATCTTGAGGATATTG GATGTAGTTCTTTATCTTGTGTAGTCGTTTGTCAAATTCAACAAGGAATT CACGAATGGTGCTTTCCTTGACACGTTTGTATCCCTCGAATTTTTCAATT GCGTTGAACTTCTCTGTAAGTTTGTCTTTTTCATAAATCTTGTCAAGCCT TGTCAAGATTTGTTTAACCCCATTTTCGCCAGTAATTTCCTCTTGTGACA ATTCAAGGGCTGCTTCTTGCGCTTTTCCTTCAAGGGTCAATACCAATGCT GGACCTTGTTTCTTCTTCTCAAGGGTTGTGAGCTCCGTCCAtatattgat tagtttcttccAATCACTATATGTTTTACTGGACGATAGCAAAGGAGGAG CTTTGTTGTAAGATGTAGATGCCATTGTTCCTCTGCTACCatgtaaaaat gaagaagataaCCTTTCTTCAGGGTGCGGTGGTCTTCACCAATTGTTAGT TCACTGTCACGATCAGTATCATCAGTTATTGTCAGTAAGTCTTAACACGA ATTAACACAACAGGTAAATGTACAGTTCATTCATTCACATAAATTAAAGC TCCTCCACAGCTGTTATTATTTGTTATCAATTATTATTATGTCTGTAACG AAACAATGGATGATTAAC

Coding sequence (CDS) from alignment at scaffold_478:268612..269979

>TCONS_00068064 ID=TCONS_00068064|Name=TCONS_00068064|organism=Clytia hemisphaerica|type=CDS|length=1125bp|location=Sequence derived from alignment at scaffold_478:268612..269979 (Clytia hemisphaerica)
TAGATATTGTTTTAGCCATACTTCTCCACATACAGTTTTGCTTGCACCAC
AGTCTAACAATCCACAGTTCCATGTTTCTGACACCAGGTTACGTAGATTA
ACTTCAGAATCATCCACATTGTGAAGGATAATCTCATGGACAACATAGGT
TTCATTATTTGTGGAGTTGCCATCTGGGCATTCTTGTTGCCAGTGGTTGA
TGCTATCACAAATTGAACATCTTGACACTCGACCAAACCGATCTAATGGg
tttttagctttttcatgAGCATTTCTTCTATCAGGCTTACTTGATTGTTC
AATCCGATAGTTCGTTTTTCGAATGGCNCAAATTGAACATCTTGACACTC
GACCAAACCGATCTAATGGgtttttagctttttcatgAACATTTCTTCTA
TCAGGCTTACTTGATTGTTCAATCCGATAGTTGGTTTTTCGAATGGTTCC
TCCTCTTGGCTTATTTTTATAGGTCTGGCGGTTTCTAGTATAGAAggtat
tttcttcttcttcagaaGTGTTTTCTCCTTCGCTTTCTCTTCCATAAAAT
GTTGGCTCGCTCTTGACCTTTACTCCTGCAAAATCACTTTCTAAGCCAGA
GATTGAGTCATCAGCAAAcacttttacaagtttgtttctGACATCTTCAT
AATTCAAATCTGTGATGGTTGCTTTGATTAACTTTTCATGTGTTGGTTCG
AGGTTAGCAGTTTTGAGTAGGCGATAGGCAAGGAGATCTTGAGGATATTG
GATGTAGTTCTTTATCTTGTGTAGTCGTTTGTCAAATTCAACAAGGAATT
CACGAATGGTGCTTTCCTTGACACGTTTGTATCCCTCGAATTTTTCAATT
GCGTTGAACTTCTCTGTAAGTTTGTCTTTTTCATAAATCTTGTCAAGCCT
TGTCAAGATTTGTTTAACCCCATTTTCGCCAGTAATTTCCTCTTGTGACA
ATTCAAGGGCTGCTTCTTGCGCTTTTCCTTCAAGGGTCAATACCAATGCT
GGACCTTGTTTCTTCTTCTCAAGGGTTGTGAGCTCCGTCCAtatattgat
tagtttcttccAATCACTATATGTTTTACTGGACGATAGCAAAGGAGGAG
CTTTGTTGTAAGATGTAGATGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042491XLOC_042491Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068064-exon-scaffold_478-1491911889:268612..269979TCONS_00068064-exon-scaffold_478-1491911889:268612..269979Clytia hemisphaericaexon
TCONS_00068064-exon-scaffold_478-1510915933:268612..269979TCONS_00068064-exon-scaffold_478-1510915933:268612..269979Clytia hemisphaericaexon
TCONS_00068064-exon-scaffold_478-1575043694:268612..269979TCONS_00068064-exon-scaffold_478-1575043694:268612..269979Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068064-proteinTCONS_00068064-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_478supercontigscaffold_478:268612..269979 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.62138 0.282075 0.877873 1.15327 1.82978 1.13042 2.24948 2.42626 0.91838 1.6461 1.26115 1.15753 2.56547 2.71661 2.38095 0.99685 1.08322 2.05872 2.95662 3.65293 2.3444 2.18582 0.431321 1.28647 0.731592 0.400163 7.15446 8.6117 1.46089 1.89741
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068064 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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