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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068062 ID=TCONS_00068062|Name=TCONS_00068062|organism=Clytia hemisphaerica|type=transcript|length=2251bp
CGTCAGTTTGCCCACCCTTCCTTAAAACAATTACTATCCTTAATTAATAA
GGCAGGCATCCCATGGTCCAACAATCACGAACTAAAGGAAGAACTAAAAA
AGGTAGATGCTGAATGTACCACCTGCCAAGTGTATCAAAAGGCCCCACCT
AAGCCAATTGTTGGCTTACCAATGGCAACCCAATTTCAAGAAACAGTAGC
TATGGACCTGAAATTTTATGATAGCAAAATCATTCTCCATTTGATTGACA
TGTGCACCAGATTGTCTTCAGCTACAACTATCAAGAACAAAAACCCAAAC
ACAGTCATAGAAGCCATCTTCAAAGTTTGGATTTCAGTGTATGGAACACC
TGAAAAATTCTTAGTCGACAATGGAGGTGAATTTGCCAATGCTGATTTCA
TGGACCTTGCTGAGCAATTTGGAATCACCATCAAAACAACAGCTGCCGAA
TCACCCTGGTCCAATGGAATTGTGGAAAGACACAACCTCACTATTGCCAA
CATGTTGGATAAGGTGCTACACGACACTGACTGTAGCTTCGACATGGCAC
TTTCTTGGTGTACCAATGCCAAAAATTCACTAGCAAATGTTCATGGATTC
TCTTCCTACCAATTGGCAATTGGAACTAATCCACGATTACTGTCAGTCAC
CACAGACAAATCCCCTGCCTTATCTGGTGAACCAGCAACAAAGTTGATCA
AAACGAACCTTGATGCATTACATAAGGCTAGGGAAGCCTTCATCCAAAGT
GAACATTCAGAAAGAATAAGAAGAGCCTTGTCACATAACATCCGTACTTC
AAGTGATGTGAAGTATGTTACTGGTGATCAGGTGTACTACAAACGAAAGG
ACTCGAGTGAATGGCATGGACCCGGCATTGTATTGGGACAAGATGGACAA
CAAGTACTAATCAAACATAGCAGCTATTATGTTAGAGTACATCCCTGTCG
AGTAAAACTGGTTCATTCTTCATTTCAACAGTCGGAAGACAACAATCGTG
ATAGACTACAAGAAAAGACAACAACTGATCATGTCAACAGTACTACAACT
CCCATCAACAATAACATGCAAGAAAACCATGCTTTGTTCTCTGATGAATC
TGATGTCGATTCTGAAAATAACACACAACCACAAATCACGCCAACCAATG
ATGAGACAAATAGAATACAATCAAACAGCTCAAACAGCCATACCAGAAAG
GTTGCCCAAAGAAAACCATCACAGATCCCTGTAAAGATAAAACATAAGAT
CAATATTCGcttccaaaataaaaacaacgaATGGGTCAATGCAAAAATAC
TATCAAAAGCTGGGAAGGTCGGCGGTAAGCACGACGGGTGGTTCAACATT
GAAACTGCAGATGGAGCCAAGAAATCAGTCAATTTCAAAAGCATCAAGGA
CATCGAGATTGAAGACGACGACGATAGTGAAACATCAATCTCAACAAACC
TATTTCAGAGTAATGACAATGAGGTGTTAAATGCTAAAGAAAAAGAACTG
ACTTCTTGGAAGTCCCAAGATGTTTATCTTGAGGTTGAAAATACTGGGCA
AAGTGTAATGTCCCTTAGATGGGTTATTACCCCAAAAGTCATCAATGGTC
AACCATCAGTGAAGGCAAGACTCGTCGCTAGGGGCTTTGAGGAAATCCAA
GACTTCCGTACAGATAGCCCAACATGCTCCAAAGAAGGATTACGAGTAGC
ACTACTCATGTTGGTATCTCATTCTTGGTCGTTACATTCACTTGACGTAA
AGACGGCTTTCTTACAAGGTGAATCCATCAACAGGGATCTCTATGTAAAA
CCTCCAAAAGAAGCTGGTACAAACAAATTATGGAAACTTCGGAAAACTGT
TTATGGCCTAGCTGATGCAAGCCGGAGTTGGTATTTGAAATTACGAACTG
AATTGATCAAGTTGAAAGGAAAGCCTGTCTCTTTAGACCAAGGAATCTTT
CTTTGGTTCAATGGATCAACGCTGTTTGGTCTCATGGCTTGCTTTGTCGA
TGATGTCCTATGGGCAGGAGCCAACCAATTTGTCAAGATAATCGACAAAC
TGAAAGAGACATTCAGTATAGGAGCTGAGTTCAACACCGATTTCAAGTAC
ATTGGAGTACACCTTCAGCAAAATGACGATTGTACAatcaaaattgatca
aaatgaTTACGTCAAGGATTTGGAAGTCATTAGTCTTGCTCAAGAAAGGA
AGAACCTCACGAAACAAGAACCTGTTAATGAAGCTGAAAGGTCACAAATC
C Run BLAST on NCBI protein sequence of TCONS_00068062-protein >TCONS_00068062-protein ID=TCONS_00068062-protein|Name=TCONS_00068062-protein|organism=Clytia hemisphaerica|type=polypeptide|length=750bp
RQFAHPSLKQLLSLINKAGIPWSNNHELKEELKKVDAECTTCQVYQKAPP
KPIVGLPMATQFQETVAMDLKFYDSKIILHLIDMCTRLSSATTIKNKNPN
TVIEAIFKVWISVYGTPEKFLVDNGGEFANADFMDLAEQFGITIKTTAAE
SPWSNGIVERHNLTIANMLDKVLHDTDCSFDMALSWCTNAKNSLANVHGF
SSYQLAIGTNPRLLSVTTDKSPALSGEPATKLIKTNLDALHKAREAFIQS
EHSERIRRALSHNIRTSSDVKYVTGDQVYYKRKDSSEWHGPGIVLGQDGQ
QVLIKHSSYYVRVHPCRVKLVHSSFQQSEDNNRDRLQEKTTTDHVNSTTT
PINNNMQENHALFSDESDVDSENNTQPQITPTNDETNRIQSNSSNSHTRK
VAQRKPSQIPVKIKHKINIRFQNKNNEWVNAKILSKAGKVGGKHDGWFNI
ETADGAKKSVNFKSIKDIEIEDDDDSETSISTNLFQSNDNEVLNAKEKEL
TSWKSQDVYLEVENTGQSVMSLRWVITPKVINGQPSVKARLVARGFEEIQ
DFRTDSPTCSKEGLRVALLMLVSHSWSLHSLDVKTAFLQGESINRDLYVK
PPKEAGTNKLWKLRKTVYGLADASRSWYLKLRTELIKLKGKPVSLDQGIF
LWFNGSTLFGLMACFVDDVLWAGANQFVKIIDKLKETFSIGAEFNTDFKY
IGVHLQQNDDCTIKIDQNDYVKDLEVISLAQERKNLTKQEPVNEAERSQI Run BLAST on NCBI transcript from alignment at scaffold_478:265895..268145 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068062 ID=TCONS_00068062|Name=TCONS_00068062|organism=Clytia hemisphaerica|type=transcript|length=2251bp|location=Sequence derived from alignment at scaffold_478:265895..268145 (Clytia hemisphaerica)
GGATTTGTGACCTTTCAGCTTCATTAACAGGTTCTTGTTTCGTGAGGTTC
TTCCTTTCTTGAGCAAGACTAATGACTTCCAAATCCTTGACGTAAtcatt
ttgatcaattttgatTGTACAATCGTCATTTTGCTGAAGGTGTACTCCAA
TGTACTTGAAATCGGTGTTGAACTCAGCTCCTATACTGAATGTCTCTTTC
AGTTTGTCGATTATCTTGACAAATTGGTTGGCTCCTGCCCATAGGACATC
ATCGACAAAGCAAGCCATGAGACCAAACAGCGTTGATCCATTGAACCAAA
GAAAGATTCCTTGGTCTAAAGAGACAGGCTTTCCTTTCAACTTGATCAAT
TCAGTTCGTAATTTCAAATACCAACTCCGGCTTGCATCAGCTAGGCCATA
AACAGTTTTCCGAAGTTTCCATAATTTGTTTGTACCAGCTTCTTTTGGAG
GTTTTACATAGAGATCCCTGTTGATGGATTCACCTTGTAAGAAAGCCGTC
TTTACGTCAAGTGAATGTAACGACCAAGAATGAGATACCAACATGAGTAG
TGCTACTCGTAATCCTTCTTTGGAGCATGTTGGGCTATCTGTACGGAAGT
CTTGGATTTCCTCAAAGCCCCTAGCGACGAGTCTTGCCTTCACTGATGGT
TGACCATTGATGACTTTTGGGGTAATAACCCATCTAAGGGACATTACACT
TTGCCCAGTATTTTCAACCTCAAGATAAACATCTTGGGACTTCCAAGAAG
TCAGTTCTTTTTCTTTAGCATTTAACACCTCATTGTCATTACTCTGAAAT
AGGTTTGTTGAGATTGATGTTTCACTATCGTCGTCGTCTTCAATCTCGAT
GTCCTTGATGCTTTTGAAATTGACTGATTTCTTGGCTCCATCTGCAGTTT
CAATGTTGAACCACCCGTCGTGCTTACCGCCGACCTTCCCAGCTTTTGAT
AGTATTTTTGCATTGACCCATtcgttgtttttattttggaagCGAATATT
GATCTTATGTTTTATCTTTACAGGGATCTGTGATGGTTTTCTTTGGGCAA
CCTTTCTGGTATGGCTGTTTGAGCTGTTTGATTGTATTCTATTTGTCTCA
TCATTGGTTGGCGTGATTTGTGGTTGTGTGTTATTTTCAGAATCGACATC
AGATTCATCAGAGAACAAAGCATGGTTTTCTTGCATGTTATTGTTGATGG
GAGTTGTAGTACTGTTGACATGATCAGTTGTTGTCTTTTCTTGTAGTCTA
TCACGATTGTTGTCTTCCGACTGTTGAAATGAAGAATGAACCAGTTTTAC
TCGACAGGGATGTACTCTAACATAATAGCTGCTATGTTTGATTAGTACTT
GTTGTCCATCTTGTCCCAATACAATGCCGGGTCCATGCCATTCACTCGAG
TCCTTTCGTTTGTAGTACACCTGATCACCAGTAACATACTTCACATCACT
TGAAGTACGGATGTTATGTGACAAGGCTCTTCTTATTCTTTCTGAATGTT
CACTTTGGATGAAGGCTTCCCTAGCCTTATGTAATGCATCAAGGTTCGTT
TTGATCAACTTTGTTGCTGGTTCACCAGATAAGGCAGGGGATTTGTCTGT
GGTGACTGACAGTAATCGTGGATTAGTTCCAATTGCCAATTGGTAGGAAG
AGAATCCATGAACATTTGCTAGTGAATTTTTGGCATTGGTACACCAAGAA
AGTGCCATGTCGAAGCTACAGTCAGTGTCGTGTAGCACCTTATCCAACAT
GTTGGCAATAGTGAGGTTGTGTCTTTCCACAATTCCATTGGACCAGGGTG
ATTCGGCAGCTGTTGTTTTGATGGTGATTCCAAATTGCTCAGCAAGGTCC
ATGAAATCAGCATTGGCAAATTCACCTCCATTGTCGACTAAGAATTTTTC
AGGTGTTCCATACACTGAAATCCAAACTTTGAAGATGGCTTCTATGACTG
TGTTTGGGTTTTTGTTCTTGATAGTTGTAGCTGAAGACAATCTGGTGCAC
ATGTCAATCAAATGGAGAATGATTTTGCTATCATAAAATTTCAGGTCCAT
AGCTACTGTTTCTTGAAATTGGGTTGCCATTGGTAAGCCAACAATTGGCT
TAGGTGGGGCCTTTTGATACACTTGGCAGGTGGTACATTCAGCATCTACC
TTTTTTAGTTCTTCCTTTAGTTCGTGATTGTTGGACCATGGGATGCCTGC
CTTATTAATTAAGGATAGTAATTGTTTTAAGGAAGGGTGGGCAAACTGAC
G Coding sequence (CDS) from alignment at scaffold_478:265895..268145 >TCONS_00068062 ID=TCONS_00068062|Name=TCONS_00068062|organism=Clytia hemisphaerica|type=CDS|length=2250bp|location=Sequence derived from alignment at scaffold_478:265895..268145 (Clytia hemisphaerica)
GATTTGTGACCTTTCAGCTTCATTAACAGGTTCTTGTTTCGTGAGGTTCT
TCCTTTCTTGAGCAAGACTAATGACTTCCAAATCCTTGACGTAAtcattt
tgatcaattttgatTGTACAATCGTCATTTTGCTGAAGGTGTACTCCAAT
GTACTTGAAATCGGTGTTGAACTCAGCTCCTATACTGAATGTCTCTTTCA
GTTTGTCGATTATCTTGACAAATTGGTTGGCTCCTGCCCATAGGACATCA
TCGACAAAGCAAGCCATGAGACCAAACAGCGTTGATCCATTGAACCAAAG
AAAGATTCCTTGGTCTAAAGAGACAGGCTTTCCTTTCAACTTGATCAATT
CAGTTCGTAATTTCAAATACCAACTCCGGCTTGCATCAGCTAGGCCATAA
ACAGTTTTCCGAAGTTTCCATAATTTGTTTGTACCAGCTTCTTTTGGAGG
TTTTACATAGAGATCCCTGTTGATGGATTCACCTTGTAAGAAAGCCGTCT
TTACGTCAAGTGAATGTAACGACCAAGAATGAGATACCAACATGAGTAGT
GCTACTCGTAATCCTTCTTTGGAGCATGTTGGGCTATCTGTACGGAAGTC
TTGGATTTCCTCAAAGCCCCTAGCGACGAGTCTTGCCTTCACTGATGGTT
GACCATTGATGACTTTTGGGGTAATAACCCATCTAAGGGACATTACACTT
TGCCCAGTATTTTCAACCTCAAGATAAACATCTTGGGACTTCCAAGAAGT
CAGTTCTTTTTCTTTAGCATTTAACACCTCATTGTCATTACTCTGAAATA
GGTTTGTTGAGATTGATGTTTCACTATCGTCGTCGTCTTCAATCTCGATG
TCCTTGATGCTTTTGAAATTGACTGATTTCTTGGCTCCATCTGCAGTTTC
AATGTTGAACCACCCGTCGTGCTTACCGCCGACCTTCCCAGCTTTTGATA
GTATTTTTGCATTGACCCATtcgttgtttttattttggaagCGAATATTG
ATCTTATGTTTTATCTTTACAGGGATCTGTGATGGTTTTCTTTGGGCAAC
CTTTCTGGTATGGCTGTTTGAGCTGTTTGATTGTATTCTATTTGTCTCAT
CATTGGTTGGCGTGATTTGTGGTTGTGTGTTATTTTCAGAATCGACATCA
GATTCATCAGAGAACAAAGCATGGTTTTCTTGCATGTTATTGTTGATGGG
AGTTGTAGTACTGTTGACATGATCAGTTGTTGTCTTTTCTTGTAGTCTAT
CACGATTGTTGTCTTCCGACTGTTGAAATGAAGAATGAACCAGTTTTACT
CGACAGGGATGTACTCTAACATAATAGCTGCTATGTTTGATTAGTACTTG
TTGTCCATCTTGTCCCAATACAATGCCGGGTCCATGCCATTCACTCGAGT
CCTTTCGTTTGTAGTACACCTGATCACCAGTAACATACTTCACATCACTT
GAAGTACGGATGTTATGTGACAAGGCTCTTCTTATTCTTTCTGAATGTTC
ACTTTGGATGAAGGCTTCCCTAGCCTTATGTAATGCATCAAGGTTCGTTT
TGATCAACTTTGTTGCTGGTTCACCAGATAAGGCAGGGGATTTGTCTGTG
GTGACTGACAGTAATCGTGGATTAGTTCCAATTGCCAATTGGTAGGAAGA
GAATCCATGAACATTTGCTAGTGAATTTTTGGCATTGGTACACCAAGAAA
GTGCCATGTCGAAGCTACAGTCAGTGTCGTGTAGCACCTTATCCAACATG
TTGGCAATAGTGAGGTTGTGTCTTTCCACAATTCCATTGGACCAGGGTGA
TTCGGCAGCTGTTGTTTTGATGGTGATTCCAAATTGCTCAGCAAGGTCCA
TGAAATCAGCATTGGCAAATTCACCTCCATTGTCGACTAAGAATTTTTCA
GGTGTTCCATACACTGAAATCCAAACTTTGAAGATGGCTTCTATGACTGT
GTTTGGGTTTTTGTTCTTGATAGTTGTAGCTGAAGACAATCTGGTGCACA
TGTCAATCAAATGGAGAATGATTTTGCTATCATAAAATTTCAGGTCCATA
GCTACTGTTTCTTGAAATTGGGTTGCCATTGGTAAGCCAACAATTGGCTT
AGGTGGGGCCTTTTGATACACTTGGCAGGTGGTACATTCAGCATCTACCT
TTTTTAGTTCTTCCTTTAGTTCGTGATTGTTGGACCATGGGATGCCTGCC
TTATTAATTAAGGATAGTAATTGTTTTAAGGAAGGGTGGGCAAACTGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068062-exon-scaffold_478-1491911889:265895..268145 | TCONS_00068062-exon-scaffold_478-1491911889:265895..268145 | Clytia hemisphaerica | exon |
| TCONS_00068062-exon-scaffold_478-1510915933:265895..268145 | TCONS_00068062-exon-scaffold_478-1510915933:265895..268145 | Clytia hemisphaerica | exon |
| TCONS_00068062-exon-scaffold_478-1575043694:265895..268145 | TCONS_00068062-exon-scaffold_478-1575043694:265895..268145 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_478 | supercontig | scaffold_478:265895..268145 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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