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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068052 ID=TCONS_00068052|Name=TCONS_00068052|organism=Clytia hemisphaerica|type=transcript|length=3436bpRun BLAST on NCBI protein sequence of TCONS_00068052-protein >TCONS_00068052-protein ID=TCONS_00068052-protein|Name=TCONS_00068052-protein|organism=Clytia hemisphaerica|type=polypeptide|length=409bp MGIERLTMNDSSQYLQQLLGQQPTEGSPQLPVMKSEDEQEYNSNTQNSFMRun BLAST on NCBI transcript from alignment at scaffold_478:718256..733955- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068052 ID=TCONS_00068052|Name=TCONS_00068052|organism=Clytia hemisphaerica|type=transcript|length=15700bp|location=Sequence derived from alignment at scaffold_478:718256..733955- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_478:718256..733955- >TCONS_00068052 ID=TCONS_00068052|Name=TCONS_00068052|organism=Clytia hemisphaerica|type=CDS|length=12300bp|location=Sequence derived from alignment at scaffold_478:718256..733955- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068052 vs. Swiss-Prot (Human)
Match: P73 (Tumor protein p73 OS=Homo sapiens GN=TP73 PE=1 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 5.601e-39 Identity = 99/269 (36.80%), Postives = 144/269 (53.53%), Query Frame = 2
Query: 707 LPDTTIFPGNFSFELSLGPHTESATKSADYTFSPSLKKLYVQKGAHCPFKLKTSHQPPPNTYIKILPVYKGSHVLSEPVRRCSNHAEGDD--EGN--PRYHFIR--ANNRQAHYETSDSGRLYLTIPYTGPQVGAEYQTELLSFMCFNSCGHSSHSKRRIDVIFMLE-NNGQVLARQVIEVRVCACPGRDRNNEEQ-----------TTPRGMGTKAGRRGSSVAC---ARGGKRRKLSSINGDEEM-CIKTNNPIHYQILTQIQEVLE 1447
+P T +PG FE++ S KSA +T+SP LKKLY Q CP ++K S PPP T I+ +PVYK + +++ V+RC NH G D EG P H IR NN + + +GR + +PY PQVG E+ T L +FMC +SC ++R I +I LE +GQVL R+ E R+CACPGRDR +E + G +K + S A G K+R+ +GDE+ ++ +++IL +++E LE
Sbjct: 115 IPSNTDYPGPHHFEVTF--QQSSTAKSATWTYSPLLKKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPVYKKAEHVTDVVKRCPNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSVVVPYEPPQVGTEFTTILYNFMCNSSCV-GGMNRRPILIIITLEMRDGQVLGRRSFEGRICACPGRDRKADEDHYREQQALNESSAKNGAASKRAFKQSPPAVPALGAGVKKRR----HGDEDTYYLQVRGRENFEILMKLKESLE 376 The following BLAST results are available for this feature:
BLAST of TCONS_00068052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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